Database: nr Query=17. HE - realigned consensus sequence Length=367 Score E Sequences producing significant alignments: (Bits) Value GU214757 Bovine coronavirus strain BCoV/WD/2003/WDBR-96 hema... 549.51 7.65e-152 ALIGNMENTS >GU214757 Bovine coronavirus strain BCoV/WD/2003/WDBR-96 hemagglutinin-esterase gene, partial cds Length = 370 E-value = 7.65e-152, Score = 608, Bitscore = 549.51, Identities = 326/367 (88%), Positives = 366/367 (99%), Gaps = 0/367 (0%) Frame = +1 Query: 158 GYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUA 217 |+||||||||+|||||||||||+||+||+|||+|||||++||+|||+|||||||||+||| Sbjct: 1 GTAATTATTCTTATATGGACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTA 60 Query: 218 AAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCG 277 ||||||||||||||||+||||||||||||||||||||+|||||||||||||||||||||| Sbjct: 61 AAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCG 120 Query: 278 AAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAU 337 |||||||+|||||+||+||+|||||||||+|||+||||||||||+||||||||||||||| Sbjct: 121 AAGGTCAACAAATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAAT 180 Query: 338 GCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGR 397 |||+||+||||||+||||||||||||||||||||||||||||||||+||||| ||||||+ Sbjct: 181 GCACCACTTCTGGTAGTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGG 240 Query: 398 UUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYA 457 |||||||||||||||||||+||||||||+|||||+|||||||+|||||||||||||||+| Sbjct: 241 TTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATA 300 Query: 458 AUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYG 517 ||||||||||||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+| Sbjct: 301 ATGGCTCTGCACAATCTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTG 360 Query: 518 CMUAYAU 524 |+||+|| Sbjct: 361 CATATAT 367 Database: nr Query=17. HE - realigned consensus sequence Length=402 Score E Sequences producing significant alignments: (Bits) Value JF795436 Betacoronavirus 1 strain BCoV/WD/WDBR-R hemagglutin... 594.595 2.05e-165 ALIGNMENTS >JF795436 Betacoronavirus 1 strain BCoV/WD/WDBR-R hemagglutinin-esterase gene, partial cds Length = 402 E-value = 2.05e-165, Score = 658, Bitscore = 594.595, Identities = 355/402 (88%), Positives = 400/402 (99%), Gaps = 0/402 (0%) Frame = +1 Query: 127 GAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCH 186 ||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+||+ Sbjct: 1 GATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAATCCT 60 Query: 187 GCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUU 246 |||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||||||||| Sbjct: 61 GCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTT 120 Query: 247 CACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGU 306 ||||| ||+|||||||||||||||||||||||||||||+|||||+||+||+||||||||| Sbjct: 121 CACTTCACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGGT 180 Query: 307 SUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGG 366 +|||+||||||||||+||||||||||||||||||+||+||||||+||||||||||||||| Sbjct: 181 GTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGG 240 Query: 367 AUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGY 426 |||||||| ||||||||+||||||||||||+|||||||||||||||||||+||||||||+ Sbjct: 241 ATGCAGAACAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGC 300 Query: 427 CUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGU 486 |||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++||||| Sbjct: 301 CTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTGT 360 Query: 487 AAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 ||||+|||||||||||||||||||||+||+||+||+||++|| Sbjct: 361 AAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCT 402 Database: nr Query=17. HE - realigned consensus sequence Length=1270 Score E Sequences producing significant alignments: (Bits) Value AH014871 Bovine coronavirus strain KWD6 hemagglutinin-estera... 1914.66 0 ALIGNMENTS >AH014871 Bovine coronavirus strain KWD6 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1132/1270 (89%), Positives = 1269/1270 (99%), Gaps = 0/1270 (0%) Frame = +1 Query: 6 UUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCC 65 |||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+||||| Sbjct: 6 TTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGACAACCC 65 Query: 66 UCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUC 125 ||||||||||+||||+||+||||||||||||||||||||||||||||||||||||||+|| Sbjct: 66 TCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTC 125 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+|| Sbjct: 126 AGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAATCC 185 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 186 TGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 245 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 246 TCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 305 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||||| Sbjct: 306 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 365 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 366 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 425 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 426 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 485 Query: 486 UAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRG 545 |||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++|+|++| Sbjct: 486 TAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAATTTTGG 545 Query: 546 KGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGU 605 +||||||||||||||||+|||||||||+||||||+||||||||||||||||||||||||| Sbjct: 546 GGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTATATCGT 605 Query: 606 ACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCA 665 |||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 606 ACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCA 665 Query: 666 AUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUAC 725 ||||||||||||||||||+||||||||||||||||||+||||||++|||+|||||||||| Sbjct: 666 ATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACCATTAC 725 Query: 726 CACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAU 785 ||||||||||||+||||||||||||||||||+||+||||||||||+|||||||||||||| Sbjct: 726 CACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCAT 785 Query: 786 UUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGA 845 ||||||+||||||||||||||||||||+||+||||||||||||||||++||||||||||| Sbjct: 786 TTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGA 845 Query: 846 UUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAU 905 ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+||||| Sbjct: 846 TTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGATAACAT 905 Query: 906 GACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGU 965 ||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+||||| Sbjct: 906 GACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGT 965 Query: 966 UGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUU 1025 |||||||||||||||||||||+|||||+||||||||||||||||||||+||||||||||| Sbjct: 966 TGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTT 1025 Query: 1026 AUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURU 1085 ||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||||||+| Sbjct: 1026 ATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGT 1085 Query: 1086 YUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURY 1145 +||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||||||++ Sbjct: 1086 CTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGATGT 1145 Query: 1146 ACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGC 1205 |||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+||+||| Sbjct: 1146 ACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGC 1205 Query: 1206 GGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCA 1265 |||||||||||||+||||||||||||||||||||||||+||||||||||||||||||||| Sbjct: 1206 GGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGGCTGCA 1265 Query: 1266 UGAUGCUUAG 1275 |||||||||| Sbjct: 1266 TGATGCTTAG 1275 Database: nr Query=17. HE - realigned consensus sequence Length=336 Score E Sequences producing significant alignments: (Bits) Value JF345134 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B6 he... 502.623 9.96e-138 ALIGNMENTS >JF345134 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B6 hemagglutinin-esterase gene, partial cds Length = 339 E-value = 9.96e-138, Score = 556, Bitscore = 502.623, Identities = 299/336 (88%), Positives = 334/336 (99%), Gaps = 0/336 (0%) Frame = +1 Query: 189 CYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCA 248 |+|||||++||+|||+||||| |||+|||||||||||||||||||+|||||||||||||| Sbjct: 1 CTTGTGTGATTCTGGCAAAATTTCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCA 60 Query: 249 CUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSU 308 ||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||||+| Sbjct: 61 CTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGGTGT 120 Query: 309 UARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAU 368 ||+||||||||||+||||||||||||||||||+||+||||||+|||||||| |||||||| Sbjct: 121 TAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGACATTTGGAT 180 Query: 369 GCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCU 428 |||||||||||||||+||||||||||||+|||||||||||||||||||+||||||||+|| Sbjct: 181 GCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCT 240 Query: 429 UACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAA 488 |||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++||||||| Sbjct: 241 TACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTGTAA 300 Query: 489 AUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 ||+|||||||||||||||||||||+||+||+||+|| Sbjct: 301 ATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 336 Database: nr Query=17. HE - realigned consensus sequence Length=371 Score E Sequences producing significant alignments: (Bits) Value JQ918858 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-573 he... 556.724 5.15e-154 ALIGNMENTS >JQ918858 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-573 hemagglutinin-esterase (HE) gene, partial cds Length = 374 E-value = 5.15e-154, Score = 616, Bitscore = 556.724, Identities = 330/371 (88%), Positives = 370/371 (99%), Gaps = 0/371 (0%) Frame = +1 Query: 154 CCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCA 213 |||||+||||| ||+|||||||||||+||+||+|||+|||||++||+|||+||||||||| Sbjct: 1 CCCCGTAATTACTCTTATATGGACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCA 60 Query: 214 KCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACA 273 +|||||||||||||||||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 61 TCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACA 120 Query: 274 GGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUU 333 |||||||||||+|||||+||+||+|||||||||+|||+||||||||||+||||||||||| Sbjct: 121 GGCGAAGGTCAACAAATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTT 180 Query: 334 AAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACU 393 |||||||+||+||||||+||||||||||||||||||||||||||||||||+||||||||| Sbjct: 181 AAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACT 240 Query: 394 CAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUU 453 |||+|||||||||||||||||||+||||||||+|||||+|||||||+||||||||||||| Sbjct: 241 CAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTT 300 Query: 454 UAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAY 513 ||+|||||||||||||||+|+|+|||++|||||||||+|||||||||||||||||||||+ Sbjct: 301 TATAATGGCTCTGCACAATCTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAAC 360 Query: 514 CCYGCMUAYAU 524 ||+||+||+|| Sbjct: 361 CCTGCATATAT 371 Database: nr Query=17. HE - realigned consensus sequence Length=359 Score E Sequences producing significant alignments: (Bits) Value JQ918852 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-58 hem... 542.297 1.14e-149 ALIGNMENTS >JQ918852 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-58 hemagglutinin-esterase (HE) gene, partial cds Length = 362 E-value = 1.14e-149, Score = 600, Bitscore = 542.297, Identities = 320/359 (89%), Positives = 359/359 (100%), Gaps = 0/359 (0%) Frame = +1 Query: 166 UCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGC 225 ||+|||||||||||+||+||+|||+|||||++||+|||+|||||||||+||||||||||| Sbjct: 1 TCTTATATGGACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGC 60 Query: 226 AACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCAR 285 ||||||||+||||||||||||||||||||+|||||||||||||||||||||||||||||+ Sbjct: 61 AACTCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAA 120 Query: 286 CAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANU 345 |||||+||+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+| Sbjct: 121 CAAATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACT 180 Query: 346 UCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAG 405 |||||+||||||||||||||||||||||||||||||||+||||||||||||+|||||||| Sbjct: 181 TCTGGTAGTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAG 240 Query: 406 AAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCU 465 |||||||||||+||||||||+|||||+|||||||+|||||||||||||||+||||||||| Sbjct: 241 AATATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCT 300 Query: 466 GCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 ||||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+||+||+|| Sbjct: 301 GCACAATCTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 359 Database: nr Query=17. HE - realigned consensus sequence Length=1203 Score E Sequences producing significant alignments: (Bits) Value MW310549 Betacoronavirus 1 isolate 2292 hemagglutinin-estera... 1768.59 0 ALIGNMENTS >MW310549 Betacoronavirus 1 isolate 2292 hemagglutinin-esterase gene, partial cds Length = 1203 E-value = 0, Score = 1960, Bitscore = 1768.59, Identities = 1061/1203 (88%), Positives = 1194/1203 (99%), Gaps = 0/1203 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCCGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+|| |||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||| || |||||+||+||+||+||++|| ||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTCCTCAATAACCCTGCATATATAGCTAAAGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+| |||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTCAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||| ++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+| ||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTATGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 1200 Query: 1219 SUA 1221 +|| Sbjct: 1201 GTA 1203 Database: nr Query=17. HE - realigned consensus sequence Length=1243 Score E Sequences producing significant alignments: (Bits) Value MT820631 Betacoronavirus HKU24 isolate Ruili-874, partial ge... 506.23 8.17e-139 ALIGNMENTS >MT820631 Betacoronavirus HKU24 isolate Ruili-874, partial genome Length = 30801 E-value = 8.17e-139, Score = 560, Bitscore = 506.23, Identities = 817/1243 (65%), Positives = 922/1243 (74%), Gaps = 16/1243 (1%) Frame = +1 Query: 41 UUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUU 100 ||||| ++ ||||||||||+|| ||||| ||||| +| ||+||+||| | |||| |||| Sbjct: 22074 TTGGTGTCATAGGTTTTGAAAATCCTCCCACCAACGTGGTTTCTCATATTAATGATGATT 22133 Query: 101 GGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYA 160 ||||||| ||||| ||||||||+ || |||||+||| | ||+|| |||+|| | Sbjct: 22134 GGTTTTTGTTTGGCGACAGTCGTAGTGACTGTAACCATATCAATAATATCAATCCAAAAA 22193 Query: 161 AUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAG 220 |||||||+|||||||||||+ |+||+ | +|||| ++||+ || |||||||| +|||| | Sbjct: 22194 ATTATTCTTATATGGACCTTGACCCCTCGTTGTGCAATTCAGGAAAAATATCTTCTAAGG 22253 Query: 221 CUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAG 280 |||| || |||||+||||||||||||||||| ||+||||| || ||||| || |||| Sbjct: 22254 CTGGTAATTCCATCTTTAGGAGTTTTCACTTCACTGATTTCTACAATTATCAGGGTGAAG 22313 Query: 281 GUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCA 340 | | ||||| || ||+||||| || +|||+|||| | || ||||| || || || | Sbjct: 22314 GGAACCAAATAATATTCTATGAAGGCGTTAATTTTTCACCAAGTCATGGGTTCAAGTGTA 22373 Query: 341 BCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUU 400 + |+| ||||+ ||||| ||||||||| | |||||||| +||||| || +||| Sbjct: 22374 CTAATGCTGGTGATAATGGTATTTGGATAGATAATAAAGGTAAGTTTTATGAGCAAGTTT 22433 Query: 401 AUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUG 460 | | ||| |||||| +||||||||+|| | | || |+|||| | ||||||||+ | Sbjct: 22434 ACAGGAAGATGGCTACTTATCGCAGCCTCTCCATAGTAACTGTATCCTATGTTTATGCAG 22493 Query: 461 GCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMU 520 |||| || | | |+ |++||||||| |||||| || | | | ||+||+||+| Sbjct: 22494 GCTCAGCCACAGCAAATTCCATTTGTAAGCGTGGTAGCTTGACTTTAGACAACCCTGCCT 22553 Query: 521 AYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUY 580 +||+ ||| | + +|++ + ||||| ||||| |+ ||||| |+||| + Sbjct: 22554 CTATACAGAAGGAAAATGGCGTTGTTAATTATCTTTATACTGCAGAAGCGAACTTTACGC 22613 Query: 581 UGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGG-------CAAGUUY 633 | || |||||| ||||| || || || || ||||| | +| +|| |||| |+ Sbjct: 22614 TCTCCAATTGTGATGAGTACATAGTTCCGCTGTGTATATATACTGGGATGTTCCAAGCTT 22673 Query: 634 UUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUU 693 || |+ || | ||| ||||+|| || ||||||| || | | +||||| | Sbjct: 22674 CTGGCGCATTC-------TATAATGATAGCCAGTATTATTATAGTTATAGTACTGGAGAA 22726 Query: 694 AUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAU 753 ||||||| + || +|| + | | | |||| ||||+| | || || ||| Sbjct: 22727 TTTTATGGCCGTAACAACACAGTAGATAAAGCTACTGTAGTTGATTACGAGTGCCAATAT 22786 Query: 754 -UUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCC 812 |||+ | | || ||||| | |||| | | |||| ||+ || | | | || ||||| Sbjct: 22787 CTTACCT-TGCCTTCTGGAATTTATAAATCTGTTTCCAATCAGTTGCTTCTTACAGTTCC 22845 Query: 813 YACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUC 872 ||+|| ||||||||||| | |||| ||| |||||+|||||||||||+|| ||+|| Sbjct: 22846 GACGAAGGCAATCTGTCTGACAAAGCCGAAGAGCTTTACGCCTGTACAGGTTGTCGATTC 22905 Query: 873 NCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUA 932 +|| |||||| +||||+++ + |||||+|| | || ||+| || ||+||| +|| || Sbjct: 22906 TCGTTGGAACCATGCCAGGACATCTGATAATAAAACAGCAGAGGCATGTCAATTGCCTTA 22965 Query: 933 CUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGA 992 || |||||||| |||||||| || |+||||||||| ||||||||| || ||+||||| Sbjct: 22966 TTGCTATTTTCGCAATTCTACCACAGATTATGTTGGTAGTTATGATATTAACCATGGGGA 23025 Query: 993 YGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCA 1052 +| ||| ||| ||||||| ||+| |||||| ||| |+ | || || ||+ | |||| Sbjct: 23026 TGTTGGATTTTCTAGCATCCTTAAGGGTTTGACTTATAATGCGCCATGCTTTGCTAAGCA 23085 Query: 1053 RGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUG 1112 +||||| ||| ||||+|+|||+| ||||||+| |||||| +||+ |+|||||+ +|| Sbjct: 23086 GGGTGTGTTTTTGTATAATAATGTCAGCAGTGTATGGCCTGCCTATGCTTATGGCGAGTG 23145 Query: 1113 YCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACC 1172 +|| |||||||| ++||| ||+| + || ++ ||+|||||| |||||+||+||||| Sbjct: 23146 CCCCACTGCTGCCAATATAAATATAAATGGAATTCCCATTTGTAACTATGATCCGCTACC 23205 Query: 1173 AMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUU 1232 |||| ||||||||||| | | |+ + ||||| |||| |||+| |||||| | || Sbjct: 23206 TGTTATATTGCTTGGCATATTGCTTGGAATAGCGGTTATAACCATTGTGGTTTTGCTTTT 23265 Query: 1233 AUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||||| | |+ ||||||||||||||||| |||||||| ||| Sbjct: 23266 ATATTTCCTTGTTGATAATGGTACTAGGCTTCATGATGCGTAG 23308 Database: nr Query=17. HE - realigned consensus sequence Length=1230 Score E Sequences producing significant alignments: (Bits) Value AY316300 Equine coronavirus NC99 hemagglutinin-esterase prot... 728.044 0 EF446615 Equine coronavirus strain NC99, complete genome 723.536 0 ALIGNMENTS >AY316300 Equine coronavirus NC99 hemagglutinin-esterase protein (HE), spike protein (S), 5.3 kDa nonstructural protein, 12.7 kDa protein, small envelope protein (E), and triple spanning membrane protein (M) genes, complete cds Length = 6915 E-value = 0, Score = 806, Bitscore = 728.044, Identities = 862/1230 (70%), Positives = 965/1230 (78%), Gaps = 12/1230 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 ||||||||+||||| ||| ||| | || ||+||| | |||| ||||||||||| ||| Sbjct: 69 GGTTTTGAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTGTTT 128 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | ||+|| ||+||||||||+||| Sbjct: 129 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATTAATCCTCGTAATTATTCTTAT 188 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 189 ATGGACCTTAATCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 248 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 249 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGTGAAGGCCAGCAAATT 308 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+|||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 309 ATATTTTATGAGGGTGTTAATTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 368 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUU---UAUAAGAAU 408 ||| | |||||||||| ||||||| | +||||| | ||+|| |||| || | Sbjct: 369 GATAACGCCGTTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTGTTTATAGGAGT 425 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 |||||||| ||||||||+|||||+||| |+ || | || |||+| ||| |||| Sbjct: 426 ATGGCTGTATATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGTACTGCT 485 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 486 GTTGCTACTAATTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATTGCT 545 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUA--AGGYUGAAGCUGAYUUUUAUYUGUCAG 586 || | +|+|++ ||||||||||||| || | |||| |+|||| +|| | Sbjct: 546 AAGGAGAGTGGTTTTACAGATTATTATTATACTAGCAT--AGCTAATTTTTCATTGCAGG 603 Query: 587 GUUGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAA 646 | ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || | Sbjct: 604 GCTGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCA 663 Query: 647 AGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCA 706 |||||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| | Sbjct: 664 AGTATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTA 723 Query: 707 AUUYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCC 765 | |+ || + ||| | | |||| ||||+||||||||| ||||| ||+ | ||| Sbjct: 724 ACTCAACCCGCCCCACTGCGGATGGTATTGATTTTAATTGTTTTTATTATAGAG-TGCCC 782 Query: 766 UCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUC 825 |||||+ ||| ||||||||| |+||||| ||||||| ||||| |+|| || Sbjct: 783 TCTGGTTTATATCAGGCCATTTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATT 842 Query: 826 UGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMU 885 ||| | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + Sbjct: 843 TGTTTGTCTAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCA 902 Query: 886 GCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGU 945 |||+++| +|||||+|||||||||||+ |||| ||+||| +|||||||||||||||||| Sbjct: 903 GCCAGGCGTTCTGATAACATGACGGCTATTGCATGCCAATTGCCGTACTGTTATTTTCGT 962 Query: 946 AAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACU 1005 |||||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| Sbjct: 963 AATTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACC 1022 Query: 1006 AGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGG 1065 || |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || Sbjct: 1023 AGTATACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGA 1082 Query: 1066 UAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCU 1125 | |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+|||||||||||| Sbjct: 1083 TTTGATAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGCTGCT 1142 Query: 1126 RRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUU 1185 ++ || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||| Sbjct: 1143 AACCTTGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCTATTATATTGCTT 1202 Query: 1186 GGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWG 1245 ||| |+ | ||||+| + || |||||||||||| ||| | | || ||||||||||+| Sbjct: 1203 GGCCTTTTGTTGGGTCTGGCTGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTG 1262 Query: 1246 GAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||| ||||| |||||| Sbjct: 1263 GATAATGGTACTAGGCTTCATGAAGCTTAG 1292 >EF446615 Equine coronavirus strain NC99, complete genome Length = 30992 E-value = 0, Score = 801, Bitscore = 723.536, Identities = 861/1230 (70%), Positives = 964/1230 (78%), Gaps = 12/1230 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 ||||||||+||||| ||| ||| | || ||+||| | |||| ||||||||||| ||| Sbjct: 22506 GGTTTTGAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTGTTT 22565 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | ||+|| ||+||||||||+||| Sbjct: 22566 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATTAATCCTCGTAATTATTCTTAT 22625 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22626 ATGGACCTTAATCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22685 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22686 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGTGAAGGCCAGCAAATT 22745 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|| +|||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22746 ATATTTTATGAGGGTGTTGATTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22805 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUU---UAUAAGAAU 408 ||| | |||||||||| ||||||| | +||||| | ||+|| |||| || | Sbjct: 22806 GATAACGCCGTTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTGTTTATAGGAGT 22862 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 |||||||| ||||||||+|||||+||| |+ || | || |||+| ||| |||| Sbjct: 22863 ATGGCTGTATATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGTACTGCT 22922 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 22923 GTTGCTACTAATTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATTGCT 22982 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUA--AGGYUGAAGCUGAYUUUUAUYUGUCAG 586 || | +|+|++ ||||||||||||| || | |||| |+|||| +|| | Sbjct: 22983 AAGGAGAGTGGTTTTACAGATTATTATTATACTAGCAT--AGCTAATTTTTCATTGCAGG 23040 Query: 587 GUUGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAA 646 | ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || | Sbjct: 23041 GCTGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCA 23100 Query: 647 AGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCA 706 |||||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| | Sbjct: 23101 AGTATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTA 23160 Query: 707 AUUYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCC 765 | |+ || + ||| | | |||| ||||+||||||||| ||||| ||+ | ||| Sbjct: 23161 ACTCAACCCGCCCCACTGCGGATGGTATTGATTTTAATTGTTTTTATTATAGAG-TGCCC 23219 Query: 766 UCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUC 825 |||||+ ||| ||||||||| |+||||| ||||||| ||||| |+|| || Sbjct: 23220 TCTGGTTTATATCAGGCCATTTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATT 23279 Query: 826 UGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMU 885 ||| | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + Sbjct: 23280 TGTTTGTCTAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCA 23339 Query: 886 GCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGU 945 |||+++| +|||||+|||||||||||+ |||| ||+||| +|||||||||||||||||| Sbjct: 23340 GCCAGGCGTTCTGATAACATGACGGCTATTGCATGCCAATTGCCGTACTGTTATTTTCGT 23399 Query: 946 AAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACU 1005 |||||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| Sbjct: 23400 AATTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACC 23459 Query: 1006 AGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGG 1065 || |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || Sbjct: 23460 AGTATACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGA 23519 Query: 1066 UAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCU 1125 | |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+|||||||||||| Sbjct: 23520 TTTGATAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGCTGCT 23579 Query: 1126 RRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUU 1185 ++ || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||| Sbjct: 23580 AACCTTGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCTATTATATTGCTT 23639 Query: 1186 GGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWG 1245 ||| |+ | ||||+| + || |||||||||||| ||| | | || ||||||||||+| Sbjct: 23640 GGCGTTTTGTTGGGTCTGGCTGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTG 23699 Query: 1246 GAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||| ||||| |||||| Sbjct: 23700 GATAATGGTACTAGGCTTCATGAAGCTTAG 23729 Database: nr Query=17. HE - realigned consensus sequence Length=1205 Score E Sequences producing significant alignments: (Bits) Value MW310548 Betacoronavirus 1 isolate 2348 hemagglutinin-estera... 1776.7 0 ALIGNMENTS >MW310548 Betacoronavirus 1 isolate 2348 hemagglutinin-esterase gene, partial cds Length = 1205 E-value = 0, Score = 1969, Bitscore = 1776.7, Identities = 1064/1205 (88%), Positives = 1197/1205 (99%), Gaps = 0/1205 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+||||||||| |+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCAGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAATCCTGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|| ||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTAAAGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+|| |||||||||||||||+||||| ++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACCGGTGTTATTTATGGTCTCAATGCTACTGAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++| +|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCGGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTATCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+||||||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATA 1200 Query: 1219 SUAGU 1223 +|||| Sbjct: 1201 GTAGT 1205 Database: nr Query=17. HE - realigned consensus sequence Length=410 Score E Sequences producing significant alignments: (Bits) Value JF795422 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-54 hem... 610.825 2.67e-170 ALIGNMENTS >JF795422 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-54 hemagglutinin-esterase gene, partial cds Length = 410 E-value = 2.67e-170, Score = 676, Bitscore = 610.825, Identities = 363/410 (88%), Positives = 409/410 (99%), Gaps = 0/410 (0%) Frame = +1 Query: 122 GYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWA 181 |+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+| Sbjct: 1 GTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTTA 60 Query: 182 AYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGA 241 |+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||| Sbjct: 61 ATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGA 120 Query: 242 GUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUG 301 |||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||| Sbjct: 121 GTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATG 180 Query: 302 AGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUA 361 |||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||| Sbjct: 181 AGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATA 240 Query: 362 UUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUC 421 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||| Sbjct: 241 TTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATC 300 Query: 422 GCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYH 481 ||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++ Sbjct: 301 GCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCC 360 Query: 482 UUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGU 531 |||||||||+|||||||||||||||||||||+||+||+||+||++||||| Sbjct: 361 TTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGT 410 Database: nr Query=17. HE - realigned consensus sequence Length=225 Score E Sequences producing significant alignments: (Bits) Value AY184411 Bovine coronavirus isolate BALAHNA/09/00 hemaggluti... 331.303 3.72e-86 AY092770 Bovine coronavirus strain ARRIAH hemagglutinin-este... 331.303 3.72e-86 AY184420 Bovine coronavirus isolate SOBINKA/04/00 hemaggluti... 329.499 1.30e-85 AY184422 Bovine coronavirus isolate SUZDAL\12\01 hemagglutin... 326.794 1.58e-84 AY184419 Bovine coronavirus isolate SHUYA/04/99 hemagglutini... 326.794 1.58e-84 AY184415 Bovine coronavirus isolate KOSHKINSK/11/00 hemagglu... 326.794 1.58e-84 AY184416 Bovine coronavirus isolate MELENKI/11/99 hemaggluti... 322.286 1.93e-83 AY184414 Bovine coronavirus isolate Kavernino/12/00 hemagglu... 322.286 1.93e-83 AY184413 Bovine coronavirus isolate JURYEV-POLSKY/03/00 hema... 322.286 1.93e-83 AY184423 Bovine coronavirus isolate YAROSLAVL/10/97 hemagglu... 317.778 8.19e-82 AY184421 Bovine coronavirus isolate STAVROVO/03/98 hemagglut... 317.778 8.19e-82 ALIGNMENTS >AY184411 Bovine coronavirus isolate BALAHNA/09/00 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 3.72e-86, Score = 366, Bitscore = 331.303, Identities = 197/225 (87%), Positives = 225/225 (100%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGAT 225 >AY092770 Bovine coronavirus strain ARRIAH hemagglutinin-esterase (HE) mRNA, partial cds Length = 228 E-value = 3.72e-86, Score = 366, Bitscore = 331.303, Identities = 197/225 (87%), Positives = 225/225 (100%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAACTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGATTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAT 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 TCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGAT 225 >AY184420 Bovine coronavirus isolate SOBINKA/04/00 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.30e-85, Score = 364, Bitscore = 329.499, Identities = 197/225 (87%), Positives = 224/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGATTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+|| |||||| Sbjct: 181 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACTCCTGAT 225 >AY184422 Bovine coronavirus isolate SUZDAL\12\01 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.58e-84, Score = 361, Bitscore = 326.794, Identities = 196/225 (87%), Positives = 224/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||| ||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTACATGACTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGAT 225 >AY184419 Bovine coronavirus isolate SHUYA/04/99 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.58e-84, Score = 361, Bitscore = 326.794, Identities = 196/225 (87%), Positives = 224/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|| ||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCGCCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAT 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGAT 225 >AY184415 Bovine coronavirus isolate KOSHKINSK/11/00 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.58e-84, Score = 361, Bitscore = 326.794, Identities = 196/225 (87%), Positives = 224/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGATTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|| ||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 CCTTACGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGAT 225 >AY184416 Bovine coronavirus isolate MELENKI/11/99 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.93e-83, Score = 356, Bitscore = 322.286, Identities = 195/225 (86%), Positives = 223/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+| + Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTTTTC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+||| || Sbjct: 181 CCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTCAT 225 >AY184414 Bovine coronavirus isolate Kavernino/12/00 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.93e-83, Score = 356, Bitscore = 322.286, Identities = 195/225 (86%), Positives = 223/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||| ||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCATAATTCTACTACCAACTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGATTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAT 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++ |||||+||+|||||| Sbjct: 181 TCCTATGGCAGATGCCCTACTGCTGCTGGCATTAATACCCCTGAT 225 >AY184413 Bovine coronavirus isolate JURYEV-POLSKY/03/00 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 1.93e-83, Score = 356, Bitscore = 322.286, Identities = 195/225 (86%), Positives = 223/225 (99%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+| + Sbjct: 121 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTTC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+| +|||||| Sbjct: 181 CCCTATGGCAGATGCCCTACTGCTGCTGATATTAACATCCCTGAT 225 >AY184423 Bovine coronavirus isolate YAROSLAVL/10/97 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 8.19e-82, Score = 351, Bitscore = 317.778, Identities = 194/225 (86%), Positives = 222/225 (98%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||| ||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAACTATGTTGGGGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||| ||||||+|||||+ Sbjct: 61 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTCATATGACTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|| ||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 CCCTATGGCAGATGCCCTACTGCTGCTGGTATTAATACCCCTGAT 225 >AY184421 Bovine coronavirus isolate STAVROVO/03/98 hemagglutinin-esterase (HE) gene, partial cds Length = 228 E-value = 8.19e-82, Score = 351, Bitscore = 317.778, Identities = 194/225 (86%), Positives = 222/225 (98%), Gaps = 0/225 (0%) Frame = +1 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||| ||||||+||+|||||||||||||||||| Sbjct: 1 TGTCAACCCCCGTACTGTTATTTTCGTAATTTTACTACCAATTATGTTGGTGTTTATGAT 60 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||| ||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 61 ATCAACCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 120 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|| ||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 121 TGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTTTAC 180 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAU 1143 +|+|||||+||+||+||||||||||||++||||||+||+|||||| Sbjct: 181 CCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGAT 225 Database: nr Query=17. HE - realigned consensus sequence Length=1231 Score E Sequences producing significant alignments: (Bits) Value MZ825085 Bovine coronavirus isolate KCD YJ 2020 hemagglutini... 1821.79 0 ALIGNMENTS >MZ825085 Bovine coronavirus isolate KCD YJ 2020 hemagglutinin-esterase protein gene, partial cds Length = 1231 E-value = 0, Score = 2019, Bitscore = 1821.79, Identities = 1088/1231 (88%), Positives = 1225/1231 (99%), Gaps = 0/1231 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||| ||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTACCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 ||+|+||||||| +||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 GGTGTCTGGCCTCCCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGU 1231 |+||||||||||||||||+|||||| ||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTCGTTGT 1231 Database: nr Query=17. HE - realigned consensus sequence Length=1233 Score E Sequences producing significant alignments: (Bits) Value DQ198385 Rat coronavirus isolate W hemagglutinin-esterase ge... 159.983 1.39e-34 ALIGNMENTS >DQ198385 Rat coronavirus isolate W hemagglutinin-esterase gene, complete cds Length = 1408 E-value = 1.39e-34, Score = 176, Bitscore = 159.983, Identities = 741/1233 (60%), Positives = 840/1233 (68%), Gaps = 44/1233 (3%) Frame = +1 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+|| |||||||||| || |||||| ||||||||||||||||+|| || |||| + || Sbjct: 151 GTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTAT 210 Query: 139 GUUGUUAMUACCAAYC-CCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURR 197 || | |+|| | +| |||| ||||| +| | |||||+ |+|| +|||||++ Sbjct: 211 GTAGAAAATAACGGTCACCCGAAATTA-GATTGGCTAGACCTTGACCCGCAATTGTGTAA 269 Query: 198 UUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGA 257 ||+ || | || || +| || ||| ||||| |+||||||||||| || |||||+|| Sbjct: 270 TTCAGGAAGGATTTCCGCAAAGAGTGGTAACTCTCTCTTTAGGAGTTTCCATTTTACTGA 329 Query: 258 UUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUAC 317 |||||| || |||||||| ||||| | |||||+|| ||+||||| || +|||+||||| Sbjct: 330 TTTTTACAACTACACAGGAGAAGGCGACCAAATTATATTTTATGAAGGAGTTAATTTTAG 389 Query: 318 GCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAA 377 || |||| |||||||||| + +|| || |||| | | |||||| ||||| Sbjct: 390 TCCCAGCCATGGCTTTAAATGCCTGGCTTACGGAGATAATAAAAGATGGATGGGCAATAA 449 Query: 378 AGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGU 437 || +||||| | | +| ||| |||| ||||| +||| | ||+|| |+||||| Sbjct: 450 AGCTCGATTTTATGCCCTAGTGTATGAGAAGATGGCCCATTATAGGAGTCTATCTTTTGT 509 Query: 438 UAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAG 497 ||+||| | |||| ||+ || ||| +|+|+ |++|||| || || Sbjct: 510 TAATGTTGCTTATGCCTATGGAGGTAATGCTAGGCCTACCTCCATTTGCAAGGACAATAA 569 Query: 498 UUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUA 557 ||| || || ||+||+ |+| +||++| || | ++| ++ +|||||||| || Sbjct: 570 GTTAACACTCAACAATCCCACCTTCATTTCGAAGGAGTCCAATCATGTTGATTATTACTA 629 Query: 558 UAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAU 617 | || ||| ||| |+|| +| ||||||||| || | ||| ||||| || || | Sbjct: 630 TGAGAGTGAGGCTAATTTCACACTACAAGGTTGTGATGAATTTATAGTACCGCTCTGCGT 689 Query: 618 UUUYAAYGGC-----------AAGUUYUU--GUC---KAAUACAAAGUAUUAUGAUGAYA 661 |||+||+||| || |+|| | | + ||||| |||||| ||+ Sbjct: 690 TTTTAATGGCCGTTCCAAGGGCAGCTCTTCGGACCCTGCCAACAAA-TATTATACAGACT 748 Query: 662 GUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYAC------US 715 ||| ||| | ||||| ||+|||||||| | ||||| +|||| |+ || |+ Sbjct: 749 CTCAGAGTTACTATAATATTGATACTGGTGTCTTATATGGGTTCAACTCAACCTTGGATG 808 Query: 716 AAACCAUUAC----CA-----CUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCU 766 || ||| || | ||| ||||+ | | |||| ||||| + |+|| | Sbjct: 809 TTGGCAATACTGCTCAGAATCCAGGTCTTGATCTCACTTGTATGTATTTTGCTTTAACTC 868 Query: 767 CUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCU 826 ||||+|||||| || |||| ||| ||||||||| | ||+ | ||||| || | Sbjct: 869 CTGGCAATTATAAGGCTGTTTCCTTGGAGTATTTGTTAACTATACCCTCAAAAGCCATAT 928 Query: 827 GUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUG 886 | | ++|||| || | |||||+||||| ||||| || ||+||+ ||||||| | Sbjct: 929 GCTTGCGTAAGCCCAAAAAGTTTACGCCTGTGCAGGTAGTAGATTCTAGGTGGAATAGCA 988 Query: 887 CCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUA 946 | ++|+ || ||+|| ||||| ||+|| |||||+|| | +|| || || | ||| || | Sbjct: 989 CTCGTCAATCAGACAATATGACTGCTGTAGCTTGTCAGCTGCCATATTGCTTTTTCCGCA 1048 Query: 947 AUUCUACUACYAAYUAUGUUGGUG---UUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUA 1003 || | || | |+||| ||||| ||||| | | ||+|| ||+ | | || Sbjct: 1049 ATACATCTGCGGATTATAGTGGTGGCACACATGATGTACACCATGGTGAT--TTTTATTT 1106 Query: 1004 CUAGCA--UACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUU 1061 | ||| || | ||||||| | ||| |+ |+||| | | | |||+|| | || Sbjct: 1107 CAGGCAGTTATTGTCTGGTTTGCTTTATAATGTTTCTTGTATAGCTCTGCAAGGAGCATT 1166 Query: 1062 UAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGC 1121 | | |+|+|||+||||| ||||| ||+ +| ||| +||+|||||||| Sbjct: 1167 TCTTTTTAATAATGTTAGCTCGCAGTGGCCGGCATATGGCTTTGGTCAGTGCCCTACTGC 1226 Query: 1122 UGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUU 1181 ||||++ ||| + + || ++|||+ | |||+| |||||+||+|| || | || || Sbjct: 1227 TGCTAACATT-GTTTATATG--GCACCTGTCTGTGTTTATGACCCTCTGCCGGTCATATT 1283 Query: 1182 GCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAU 1241 ||| || |+ | ||||+| + || || ||||||||+| || | | || |||||||| Sbjct: 1284 GCTCGGTGTCTTATTGGTTATAGCTGTGTTAATTATTGTTTTTCTTATTTTGTATTTTAT 1343 Query: 1242 GGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUA 1274 | ||||| || |||| |||||||||| || Sbjct: 1344 GACGGATAGCAGTGTTAGGTTGCATGATGCCTA 1376 Database: nr Query=17. HE - realigned consensus sequence Length=1268 Score E Sequences producing significant alignments: (Bits) Value OL840242 Bovine coronavirus isolate KCD GJ5 2021 hemagglutin... 1897.53 0 ALIGNMENTS >OL840242 Bovine coronavirus isolate KCD GJ5 2021 hemagglutinin-esterase protein gene, partial cds Length = 1268 E-value = 0, Score = 2103, Bitscore = 1897.53, Identities = 1127/1268 (88%), Positives = 1264/1268 (99%), Gaps = 0/1268 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||+ |||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCATAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGA 1268 |||||||| Sbjct: 1261 CTGCATGA 1268 Database: nr Query=17. HE - realigned consensus sequence Length=1255 Score E Sequences producing significant alignments: (Bits) Value MZ825080 Bovine coronavirus isolate KCD GJ4 2019 hemagglutin... 1830.8 0 ALIGNMENTS >MZ825080 Bovine coronavirus isolate KCD GJ4 2019 hemagglutinin-esterase protein gene, partial cds Length = 1255 E-value = 0, Score = 2029, Bitscore = 1830.8, Identities = 1104/1255 (87%), Positives = 1242/1255 (98%), Gaps = 0/1255 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+|| |||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATTATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 | ||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 GGGCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUA 1255 |+||||||||||||| ||+|| |||| ||||| ||| ||||| + ||||||||| Sbjct: 1201 GTTGCGGTCATAATTCTTGTACTTTTATTGTTGTATGTTATGATACATAATGGTA 1255 Database: nr Query=17. HE - realigned consensus sequence Length=412 Score E Sequences producing significant alignments: (Bits) Value JF795425 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-577 he... 614.432 2.19e-171 ALIGNMENTS >JF795425 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-577 hemagglutinin-esterase gene, partial cds Length = 412 E-value = 2.19e-171, Score = 680, Bitscore = 614.432, Identities = 365/412 (88%), Positives = 411/412 (99%), Gaps = 0/412 (0%) Frame = +1 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+ Sbjct: 1 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTT 60 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 61 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 120 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 121 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 180 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 181 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 240 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 241 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 300 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 301 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 360 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUG 532 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||| Sbjct: 361 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTG 412 Database: nr Query=17. HE - realigned consensus sequence Length=393 Score E Sequences producing significant alignments: (Bits) Value JF795432 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-F-23 hem... 596.398 5.87e-166 ALIGNMENTS >JF795432 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-F-23 hemagglutinin-esterase gene, partial cds Length = 393 E-value = 5.87e-166, Score = 660, Bitscore = 596.398, Identities = 352/393 (89%), Positives = 392/393 (99%), Gaps = 0/393 (0%) Frame = +1 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|||||||||||+||||||||||+||||||+|||||+||||||||+||||||||||| Sbjct: 1 TCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCT 60 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 61 TAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 120 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 121 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTA 180 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 181 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGA 240 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 241 TATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTA 300 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+||| Sbjct: 301 TCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACAGC 360 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAA 512 ++|||||||||+||||||||||||||||||||| Sbjct: 361 CCTTTGTAAATCTGGTAGTTTAGTTCTTAATAA 393 Database: nr Query=17. HE - realigned consensus sequence Length=397 Score E Sequences producing significant alignments: (Bits) Value JF345136 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B8 he... 590.988 2.50e-164 ALIGNMENTS >JF345136 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B8 hemagglutinin-esterase gene, partial cds Length = 400 E-value = 2.50e-164, Score = 654, Bitscore = 590.988, Identities = 352/397 (88%), Positives = 395/397 (99%), Gaps = 0/397 (0%) Frame = +1 Query: 128 AUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHG 187 |||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+||+| Sbjct: 1 ATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAATCCTG 60 Query: 188 CCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUC 247 ||+|||||++||+|||+||||| |||+|||||||||||||||||||+||||||||||||| Sbjct: 61 CCTTGTGTGATTCTGGCAAAATTTCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTC 120 Query: 248 ACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUS 307 |||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||||+ Sbjct: 121 ACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGGTG 180 Query: 308 UUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGA 367 |||+||||||||||+||||||||||||||||||+||+||||||+|||||||| ||||||| Sbjct: 181 TTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGACATTTGGA 240 Query: 368 UGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYC 427 ||||||||||||||||+||||||||||||+|||||||||||||||||||+||||||||+| Sbjct: 241 TGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCC 300 Query: 428 UUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUA 487 ||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||||| Sbjct: 301 TTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTGTA 360 Query: 488 AAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 |||+|||||||||||||||||||||+||+||+||+|| Sbjct: 361 AATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 397 Database: nr Query=17. HE - realigned consensus sequence Length=1287 Score E Sequences producing significant alignments: (Bits) Value MW587040 Human coronavirus OC43 isolate S0128YHP ORF1ab poly... 1685.63 0 ALIGNMENTS >MW587040 Human coronavirus OC43 isolate S0128YHP ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1a), ns2 (ns2), hemagglutinin-esterase (HE), surface glycoprotein (S), ns12.9 (ns12.9), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and I protein (N) genes, complete cds Length = 30727 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAG------------UUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+|||||| |||||| ||||||||+||+|| ||+||++|| Sbjct: 22834 TTTTGTAAATCTGGTAGNNNNNNNNNNNNTTTAGTCCTTAATAACCCTGCTTATATAGCT 22893 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22894 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22950 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22951 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23010 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23011 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23070 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23071 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23130 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23131 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23190 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23191 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23250 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23251 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23310 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23311 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23370 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23371 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23430 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23431 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23490 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23491 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23550 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23551 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23610 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23611 AATGTTACTAGGCTGCATGATGCTTAG 23637 Database: nr Query=17. HE - realigned consensus sequence Length=344 Score E Sequences producing significant alignments: (Bits) Value JQ918856 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-67 hem... 520.657 3.71e-143 ALIGNMENTS >JQ918856 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-67 hemagglutinin-esterase (HE) gene, partial cds Length = 348 E-value = 3.71e-143, Score = 576, Bitscore = 520.657, Identities = 307/344 (89%), Positives = 344/344 (100%), Gaps = 0/344 (0%) Frame = +1 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 2 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 61 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 62 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 121 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 122 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 181 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 182 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 241 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 242 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 301 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 +|||||||||+|||||||||||||||||||||+||+||+||+|| Sbjct: 302 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 345 Database: nr Query=17. HE - realigned consensus sequence Length=1287 Score E Sequences producing significant alignments: (Bits) Value OP037440 Bovine coronavirus isolate VDC/2022/05/E, partial g... 1894.82 0 OP037413 Bovine coronavirus isolate SDSU/2022/04/R, partial ... 1890.32 0 OP037411 Bovine coronavirus isolate SDSU/2022/02/R, partial ... 1890.32 0 OP037410 Bovine coronavirus isolate SDSU/2022/01/R, partial ... 1890.32 0 OP037405 Bovine coronavirus isolate SDSU/2021/02/R, partial ... 1890.32 0 OP037400 Bovine coronavirus isolate SDSU/2020/04/R, partial ... 1885.81 0 OP037398 Bovine coronavirus isolate SDSU/2020/02/R, partial ... 1885.81 0 OP037404 Bovine coronavirus isolate SDSU/2021/01/R, partial ... 1884.0 0 OP037393 Bovine coronavirus isolate MARC/2020/03/R, partial ... 1881.3 0 OP037391 Bovine coronavirus isolate MARC/2020/01/R, partial ... 1881.3 0 OP037412 Bovine coronavirus isolate SDSU/2022/03/R, partial ... 1863.26 0 MN982199 Bovine coronavirus isolate BCOV-China/SWUN/A10/2018... 1855.15 0 MN982190 Bovine coronavirus isolate BCOV-China/SWUN/B1/2018 ... 1855.15 0 MN982186 Bovine coronavirus isolate BCOV-China/SWUN/A6/2018 ... 1855.15 0 ALIGNMENTS >OP037440 Bovine coronavirus isolate VDC/2022/05/E, partial genome Length = 31033 E-value = 0, Score = 2100, Bitscore = 1894.82, Identities = 1136/1287 (88%), Positives = 1274/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 |+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 GATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 23008 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23009 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23068 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23069 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTTTACCCTCT 23128 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23129 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23188 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23189 CTTAATAAGCGTAAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23248 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23249 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23308 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23309 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23368 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23369 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23428 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23429 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23488 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23489 ATTAATACCCCTGATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGC 23548 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23549 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23608 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23609 AATGGTACTAGGCTGCATGATGCTTAG 23635 >OP037413 Bovine coronavirus isolate SDSU/2022/04/R, partial genome Length = 30730 E-value = 0, Score = 2095, Bitscore = 1890.32, Identities = 1135/1287 (88%), Positives = 1273/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22257 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22316 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22317 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22376 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22377 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22436 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22437 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22496 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22497 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22556 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22557 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22616 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22617 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22676 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22677 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22736 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22737 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22796 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22797 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22856 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22857 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22916 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22917 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22976 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 22977 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23036 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23037 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23096 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23097 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23156 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||| +||||||||||||||||||||| Sbjct: 23157 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAAT 23216 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23217 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23276 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||| ||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23277 ATACTCAGTGGTCTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23336 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23337 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23396 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23397 ATTAATACCCCTGATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23456 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23457 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23516 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23517 AATGGTACTAGGCTGCATGATGCTTAG 23543 >OP037411 Bovine coronavirus isolate SDSU/2022/02/R, partial genome Length = 30875 E-value = 0, Score = 2095, Bitscore = 1890.32, Identities = 1135/1287 (88%), Positives = 1273/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22310 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22369 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22370 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22429 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22430 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22489 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22490 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22549 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22550 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22609 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22610 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22669 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22670 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22729 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22730 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22789 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22790 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22849 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22850 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22909 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22910 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22969 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22970 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23029 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23030 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23089 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23090 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23149 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23150 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23209 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||| +||||||||||||||||||||| Sbjct: 23210 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAAT 23269 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23270 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23329 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||| ||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23330 ATACTCAGTGGTCTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23389 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23390 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23449 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23450 ATTAATACCCCTGATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23509 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23510 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23569 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23570 AATGGTACTAGGCTGCATGATGCTTAG 23596 >OP037410 Bovine coronavirus isolate SDSU/2022/01/R, partial genome Length = 30918 E-value = 0, Score = 2095, Bitscore = 1890.32, Identities = 1135/1287 (88%), Positives = 1273/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22319 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22378 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22379 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22438 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22439 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22498 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22499 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22558 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22559 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22618 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22619 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22678 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22679 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22738 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22739 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22798 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22799 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22858 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22859 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22918 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22919 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22978 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22979 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23038 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23039 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23098 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23099 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23158 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23159 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23218 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||| +||||||||||||||||||||| Sbjct: 23219 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAAT 23278 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23279 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23338 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||| ||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23339 ATACTCAGTGGTCTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23398 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23399 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23458 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23459 ATTAATACCCCTGATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23518 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23519 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23578 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23579 AATGGTACTAGGCTGCATGATGCTTAG 23605 >OP037405 Bovine coronavirus isolate SDSU/2021/02/R, partial genome Length = 30842 E-value = 0, Score = 2095, Bitscore = 1890.32, Identities = 1135/1287 (88%), Positives = 1273/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22285 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22344 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22345 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22404 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22405 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22464 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22465 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22524 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22525 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22584 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22585 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22644 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22645 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22704 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22705 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22764 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22765 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22824 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22825 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22884 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22885 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22944 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22945 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23004 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23005 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23064 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23065 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23124 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23125 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23184 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||| +||||||||||||||||||||| Sbjct: 23185 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAAT 23244 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23245 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23304 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||| ||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23305 ATACTCAGTGGTCTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23364 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23365 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23424 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23425 ATTAATACCCCTGATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23484 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23485 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23544 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23545 AATGGTACTAGGCTGCATGATGCTTAG 23571 >OP037400 Bovine coronavirus isolate SDSU/2020/04/R, partial genome Length = 30868 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1134/1287 (88%), Positives = 1272/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||| ||+||||||||||+++||||||||||+ Sbjct: 22311 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGTTGCATAATTGGTAGCCTAGGTTTTGAT 22370 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22371 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22430 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22431 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22490 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22491 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22550 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22551 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22610 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22611 GAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22670 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22671 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22730 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22731 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22790 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++ Sbjct: 22791 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAC 22850 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22851 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22910 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22911 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22970 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22971 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23030 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23031 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23090 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23091 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 23150 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23151 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23210 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|| ||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23211 AGGCAGTCTGATAATATGACGGCAGTTGCTTGCCAACCCCCGTACTGTTATTTTCGTAAT 23270 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23271 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23330 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23331 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23390 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23391 GATAATGTTAGCAGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTAAT 23450 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23451 ATTAACACCCCTGATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23510 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23511 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23570 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23571 AATGGTACTAGGCTGCATGATGCTTAG 23597 >OP037398 Bovine coronavirus isolate SDSU/2020/02/R, partial genome Length = 30682 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1134/1287 (88%), Positives = 1272/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++| ||||||||+ Sbjct: 22164 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTTGGTTTTGAT 22223 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22224 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22283 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22284 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22343 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 |+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22344 GATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22403 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22404 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22463 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22464 GAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22523 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22524 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22583 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22584 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22643 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22644 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22703 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22704 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22763 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22764 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22823 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22824 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22883 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+| ||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 22884 TCTACTGAGACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 22943 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 22944 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23003 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23004 CTTAATAAGCGTAAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23063 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23064 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23123 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23124 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23183 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23184 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23243 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23244 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23303 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23304 ATTAATACCCCTGATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGC 23363 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23364 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23423 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23424 AATGGTACTAGGCTGCATGATGCTTAG 23450 >OP037404 Bovine coronavirus isolate SDSU/2021/01/R, partial genome Length = 30909 E-value = 0, Score = 2088, Bitscore = 1884.0, Identities = 1134/1287 (88%), Positives = 1271/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22301 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGTATAATTGGTAGCTTAGGTTTTGAT 22360 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+|| |||||||||||||||||||||||||||||||||||| Sbjct: 22361 AACCCTCCTACCAATGTTGTTTCCCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22420 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22421 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22480 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22481 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22540 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22541 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22600 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22601 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22660 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22661 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22720 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22721 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22780 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22781 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22840 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22841 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22900 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22901 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22960 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22961 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23020 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23021 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23080 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23081 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 23140 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|| ||+||+||||||||||+|||| Sbjct: 23141 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTAGATTCGCGGTGGAACAATGCC 23200 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23201 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23260 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23261 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23320 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23321 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23380 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23381 GATAATGTTAGCAGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGAT 23440 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23441 ATTAATACCCCTGATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23500 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23501 ATTCTTTTGGTTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23560 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23561 AATGGTACTAGGCTGCATGATGCTTAG 23587 >OP037393 Bovine coronavirus isolate MARC/2020/03/R, partial genome Length = 31037 E-value = 0, Score = 2085, Bitscore = 1881.3, Identities = 1133/1287 (88%), Positives = 1271/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||| + Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGTT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ | |||+||||||||| Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCCACTGTTTCGTCGAATACAAAG 23011 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23012 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAAT 23071 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23072 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23131 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23132 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 23191 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+|| |||||||+|||| Sbjct: 23192 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGTTGGAACAATGCC 23251 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23252 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23311 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23312 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23371 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23372 ATACTCAGTGGTTTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23431 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23432 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23491 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23492 ATTAATATCCCTGATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23551 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23552 ATTCTTTTGGTTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23611 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23612 AATGGTACTAGGCTGCATGATGCTTAG 23638 >OP037391 Bovine coronavirus isolate MARC/2020/01/R, partial genome Length = 31010 E-value = 0, Score = 2085, Bitscore = 1881.3, Identities = 1133/1287 (88%), Positives = 1271/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||| + Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGTT 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ | |||+||||||||| Sbjct: 22925 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCCACTGTTTCGTCGAATACAAAG 22984 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22985 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAAT 23044 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23045 TCTACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23104 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23105 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 23164 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+|| |||||||+|||| Sbjct: 23165 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGTTGGAACAATGCC 23224 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23225 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23284 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23285 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23344 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23345 ATACTCAGTGGTTTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23404 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23405 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23464 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +||||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23465 ATTAATATCCCTGATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23524 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23525 ATTCTTTTGGTTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23584 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23585 AATGGTACTAGGCTGCATGATGCTTAG 23611 >OP037412 Bovine coronavirus isolate SDSU/2022/03/R, partial genome Length = 30840 E-value = 0, Score = 2065, Bitscore = 1863.26, Identities = 1129/1287 (87%), Positives = 1267/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22274 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 22333 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22334 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22393 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22394 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22453 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22454 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22513 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22514 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22573 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22574 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22633 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+| |||||||||||||||||+||| Sbjct: 22634 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTATATAAGAATATGGCTGTGTAT 22693 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22694 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22753 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+ |||| |||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22754 CTTTGTAAATCCGGTAATTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22813 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+||||||||||||| |||||| Sbjct: 22814 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGATGAGTAT 22873 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ |||||+||||||||| Sbjct: 22874 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTAAGGCTACTGTTTTGTCGAATACAAAG 22933 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22934 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22993 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+|||| |||| ||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 22994 TCTACTGAAACTATTATCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23053 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23054 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGT 23113 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 ||||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23114 CTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23173 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23174 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23233 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||| Sbjct: 23234 TCTACTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGC 23293 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23294 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23353 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++| Sbjct: 23354 GATAATGTTAGCAGTGTTTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGAT 23413 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+|||| |++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23414 ATTAATACCCCTGCTGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGC 23473 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23474 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23533 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23534 AATGGTACTAGGCTGCATGATGCTTAG 23560 >MN982199 Bovine coronavirus isolate BCOV-China/SWUN/A10/2018, complete genome Length = 31028 E-value = 0, Score = 2056, Bitscore = 1855.15, Identities = 1128/1287 (87%), Positives = 1264/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+ |||||+|||||+||||||||+|| ||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACCACCAACCCCCGTAATTATTCTTACATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ ||||| ||||||||| Sbjct: 22952 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTAAGGCTACTGTTTTGTCAAATACAAAG 23011 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23012 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23071 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 23072 TCCACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 23131 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23132 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 23191 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 || |++|||||||||||||||||+|||||||| ||+|||||+||+||||||||||+|||| Sbjct: 23192 CTCAATAAGCGTAAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCC 23251 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23252 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 23311 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||| ||+||+||||||||||||||||||||||||||+|||||+|| |||||||||||| Sbjct: 23312 TCTACCACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGC 23371 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 23372 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23431 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||| |||++| Sbjct: 23432 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGAT 23491 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+| ||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 23492 ATTAATACCCATGATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGC 23551 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 23552 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 23611 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 23612 AATGGTACTAGGCTGCATGATGCTTAG 23638 >MN982190 Bovine coronavirus isolate BCOV-China/SWUN/B1/2018 hemagglutinin-esterase gene, complete cds Length = 1287 E-value = 0, Score = 2056, Bitscore = 1855.15, Identities = 1128/1287 (87%), Positives = 1264/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+ |||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACCACCAACCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ ||||| ||||||||| Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTAAGGCTACTGTTTTGTCAAATACAAAG 660 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 661 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 720 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 721 TCCACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 780 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 781 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 840 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 || |++|||||||||||||||||+|||||||| ||+|||||+||+||||||||||+|||| Sbjct: 841 CTCAATAAGCGTAAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCC 900 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 901 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 960 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||| ||+||+||||||||||||||||||||||||||+|||||+|| |||||||||||| Sbjct: 961 TCTACCACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGC 1020 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 1021 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 1080 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||| |||++| Sbjct: 1081 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGAT 1140 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+| ||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 1141 ATTAATACCCATGATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGC 1200 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 1201 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 1260 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 1261 AATGGTACTAGGCTGCATGATGCTTAG 1287 >MN982186 Bovine coronavirus isolate BCOV-China/SWUN/A6/2018 hemagglutinin-esterase gene, complete cds Length = 1287 E-value = 0, Score = 2056, Bitscore = 1855.15, Identities = 1128/1287 (87%), Positives = 1264/1287 (98%), Gaps = 12/1287 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+ |||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACCACCAACCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUY------------UUGUCKAAUACAAAG 648 ||||||||||||||||||||+||+||||||||+ ||||| ||||||||| Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTAAGGCTACTGTTTTGTCAAATACAAAG 660 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 661 TATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 720 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |++|||+||||||||||||||||||||||+||||||||||||||||||+||+|||||||| Sbjct: 721 TCCACTGAAACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCT 780 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 781 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGT 840 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 || |++|||||||||||||||||+|||||||| ||+|||||+||+||||||||||+|||| Sbjct: 841 CTCAATAAGCGTAAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCC 900 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 901 AGGCAGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAT 960 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||| ||+||+||||||||||||||||||||||||||+|||||+|| |||||||||||| Sbjct: 961 TCTACCACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGC 1020 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+|||||||||||||||||+|||||+|||||+||+|||||+||||||||||||||| Sbjct: 1021 ATACTCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 1080 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||| |||++| Sbjct: 1081 GATAATGTTAGCAGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGAT 1140 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+||+| ||||++|||+||||||+|||||||+||+||||||+|||||||||||||| Sbjct: 1141 ATTAATACCCATGATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGC 1200 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+||+||||||||||||||||+||||||||||||||||||||||||+|||| Sbjct: 1201 ATTCTTTTGGGTGTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGAT 1260 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||||||||||||||| Sbjct: 1261 AATGGTACTAGGCTGCATGATGCTTAG 1287 Database: nr Query=17. HE - realigned consensus sequence Length=1287 Score E Sequences producing significant alignments: (Bits) Value MG977451 Human coronavirus OC43 isolate TNP 12636, complete ... 1690.14 0 MF374983 Human coronavirus OC43 isolate HCoV-OC43/USA/TCNP_0... 1690.14 0 MW938760 Human coronavirus OC43 isolate HK19-01, complete ge... 1685.63 0 MW587042 Human coronavirus OC43 isolate S0979LY ORF1ab polyp... 1685.63 0 MW532118 Human coronavirus OC43 strain OC43/China/09/2017, c... 1685.63 0 MW532116 Human coronavirus OC43 strain OC43/China/06/2017, c... 1685.63 0 MW532115 Human coronavirus OC43 strain OC43/China/05/2017, c... 1685.63 0 MW532113 Human coronavirus OC43 strain OC43/China/04/2017, c... 1685.63 0 MT118678 Human coronavirus OC43 strain 2018_9906, partial ge... 1685.63 0 MT118673 Human coronavirus OC43 strain 2018_9142, partial ge... 1685.63 0 MN306042 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 MH121121 Human coronavirus OC43 isolate HCoV-OC43/USA/ACRI_0... 1685.63 0 MG197723 Human coronavirus OC43 strain HZ-459, complete genome 1685.63 0 KY983588 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 KY983585 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 KY983583 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 KY967359 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 KY684759 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 KY369906 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 KY369905 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1685.63 0 MW532117 Human coronavirus OC43 strain OC43/China/11/2017, c... 1681.12 0 MW532114 Human coronavirus OC43 strain OC43/China/08/2017, c... 1681.12 0 MT118692 Human coronavirus OC43 strain 2019_1540, partial ge... 1681.12 0 MT118685 Human coronavirus OC43 strain 2019_0546, partial ge... 1681.12 0 MT118667 Human coronavirus OC43 strain 2017_1822, partial ge... 1681.12 0 MN310478 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1681.12 0 MN306041 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1681.12 0 MN306036 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1681.12 0 MN026164 Human coronavirus OC43 isolate OC43_KLF_01_2018, co... 1681.12 0 MF374985 Human coronavirus OC43 isolate HCoV-OC43/USA/TCNP_0... 1681.12 0 LC720427 Human coronavirus OC43 HCoVOC43_Fukushima_OR7_2020 ... 1681.12 0 KY967361 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1681.12 0 KY967358 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1681.12 0 KY369907 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1681.12 0 MZ450972 Human coronavirus OC43 strain OC43/Seattle/USA/2095... 1676.62 0 MW532119 Human coronavirus OC43 strain OC43/China/10/2017, c... 1676.62 0 MT118683 Human coronavirus OC43 strain 2019_0522, partial ge... 1676.62 0 MG977452 Human coronavirus OC43 isolate TNP 12643, complete ... 1674.81 0 MG977449 Human coronavirus OC43 isolate TNP F1834_2, complet... 1674.81 0 MG977448 Human coronavirus OC43 isolate TNP F1833_2, partial... 1674.81 0 MG977447 Human coronavirus OC43 isolate TNP F1832_2, complet... 1674.81 0 MG977446 Human coronavirus OC43 isolate TNP F1791_2, partial... 1674.81 0 MG977445 Human coronavirus OC43 isolate TNP F1790_2, complet... 1674.81 0 MG977444 Human coronavirus OC43 isolate TNP F1778_2, complet... 1674.81 0 MN306053 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1672.11 0 ALIGNMENTS >MG977451 Human coronavirus OC43 isolate TNP 12636, complete genome Length = 30722 E-value = 0, Score = 1873, Bitscore = 1690.14, Identities = 1096/1287 (85%), Positives = 1224/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22348 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22407 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22408 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22467 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22468 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22527 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22528 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22587 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22588 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22647 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22648 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22707 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22708 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22767 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22768 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22827 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22828 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22887 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| || |||+|||||||||+||||||+|||||||| Sbjct: 22888 CCTCAAGCTAAA-TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22944 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22945 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 23004 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23005 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23064 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23065 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23124 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23125 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23184 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23185 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23244 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23245 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23304 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23305 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23364 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23365 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23424 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23425 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23484 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| ||||||||||||| Sbjct: 23485 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGT 23544 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23545 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23604 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23605 AATGTTACTAGGCTGCATGATGCTTAG 23631 >MF374983 Human coronavirus OC43 isolate HCoV-OC43/USA/TCNP_0070/2016, complete genome Length = 30721 E-value = 0, Score = 1873, Bitscore = 1690.14, Identities = 1096/1287 (85%), Positives = 1224/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22529 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22828 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22829 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22888 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22889 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22945 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22946 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 23005 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23006 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23065 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23066 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23125 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23126 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23185 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23186 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23245 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23246 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23305 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23306 TCTACTACCAATTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23365 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23366 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23425 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23426 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23485 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23486 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23545 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23546 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23605 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23606 AATGTTACTAGGCTGCATGATGCTTAG 23632 >MW938760 Human coronavirus OC43 isolate HK19-01, complete genome Length = 30742 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22343 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22402 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22403 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22462 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22463 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22522 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22523 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22582 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22583 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22642 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22643 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22702 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22703 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22762 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22763 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22822 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22823 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22882 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22883 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22939 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22940 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22999 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23000 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23059 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23060 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23119 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23120 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23179 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23180 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23239 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23240 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23299 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23300 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23359 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23360 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23419 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23420 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23479 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23480 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23539 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23540 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23599 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23600 AATGTTACTAGGCTGCATGATGCTTAG 23626 >MW587042 Human coronavirus OC43 isolate S0979LY ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1a), ns2 (ns2), hemagglutinin-esterase (HE), surface glycoprotein (S), ns12.9 (ns12.9), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and I protein (N) genes, complete cds Length = 30727 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22834 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22893 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22894 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22950 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22951 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23010 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23011 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23070 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23071 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23130 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23131 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23190 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23191 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23250 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23251 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23310 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23311 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23370 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23371 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23430 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23431 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23490 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23491 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23550 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23551 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23610 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23611 AATGTTACTAGGCTGCATGATGCTTAG 23637 >MW532118 Human coronavirus OC43 strain OC43/China/09/2017, complete genome Length = 30689 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MW532116 Human coronavirus OC43 strain OC43/China/06/2017, complete genome Length = 30678 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MW532115 Human coronavirus OC43 strain OC43/China/05/2017, complete genome Length = 30695 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATTATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||| ||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCGCTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MW532113 Human coronavirus OC43 strain OC43/China/04/2017, complete genome Length = 30695 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MT118678 Human coronavirus OC43 strain 2018_9906, partial genome Length = 30737 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22834 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22893 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22894 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22950 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22951 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23010 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23011 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23070 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23071 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23130 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23131 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23190 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23191 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23250 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23251 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23310 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23311 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23370 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23371 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23430 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23431 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23490 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23491 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23550 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23551 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23610 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23611 AATGTTACTAGGCTGCATGATGCTTAG 23637 >MT118673 Human coronavirus OC43 strain 2018_9142, partial genome Length = 30701 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22531 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22831 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22890 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22891 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22947 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22948 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23007 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23008 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23067 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23068 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23127 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23128 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23187 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23188 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23247 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23248 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23307 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23308 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23367 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23368 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23427 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23428 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23487 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23488 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23547 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23548 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23607 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23608 AATGTTACTAGGCTGCATGATGCTTAG 23634 >MN306042 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC0839/2019, complete genome Length = 30723 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22531 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22831 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22890 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22891 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22947 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22948 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23007 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23008 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23067 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23068 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23127 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23128 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23187 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23188 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23247 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23248 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23307 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23308 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23367 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23368 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23427 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23428 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23487 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23488 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23547 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23548 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23607 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23608 AATGTTACTAGGCTGCATGATGCTTAG 23634 >MH121121 Human coronavirus OC43 isolate HCoV-OC43/USA/ACRI_0213/2016, complete genome Length = 30722 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22531 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22831 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22890 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22891 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22947 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22948 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23007 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23008 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23067 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23068 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23127 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23128 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23187 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23188 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23247 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23248 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23307 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23308 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23367 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23368 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23427 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23428 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23487 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23488 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23547 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23548 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23607 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23608 AATGTTACTAGGCTGCATGATGCTTAG 23634 >MG197723 Human coronavirus OC43 strain HZ-459, complete genome Length = 30566 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22275 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22334 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22335 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22394 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22395 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22454 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22455 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22514 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22515 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22574 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22575 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22634 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22635 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22694 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22695 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22754 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22755 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22814 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22815 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22871 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22872 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22931 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22932 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22991 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 22992 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23051 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23052 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23111 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23112 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23171 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23172 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23231 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23232 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23291 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23292 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23351 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23352 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23411 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23412 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23471 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23472 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23531 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23532 AATGTTACTAGGCTGCATGATGCTTAG 23558 >KY983588 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC3118/2015, complete genome Length = 30562 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGTTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >KY983585 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2854/2015, complete genome Length = 30659 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22320 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22379 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22380 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22439 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22440 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22499 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22500 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22559 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22560 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22619 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22620 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22679 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22680 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22739 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22740 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22799 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22800 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22859 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22860 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22916 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22917 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22976 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22977 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23036 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23037 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23096 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23097 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23156 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23157 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23216 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23217 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23276 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23277 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23336 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23337 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23396 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23397 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23456 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23457 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23516 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23517 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23576 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23577 AATGTTACTAGGCTGCATGATGCTTAG 23603 >KY983583 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2481/2015, complete genome Length = 30668 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >KY967359 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2730/2015, complete genome Length = 30670 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22322 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22381 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22382 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22441 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22442 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22501 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22502 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22561 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22562 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22621 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22622 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22681 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22682 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22741 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22742 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22801 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22802 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22861 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22862 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22918 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22919 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22978 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22979 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23038 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23039 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23098 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23099 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23158 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23159 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23218 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23219 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23278 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23279 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23338 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23339 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23398 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23399 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23458 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23459 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23518 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23519 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23578 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23579 AATGTTACTAGGCTGCATGATGCTTAG 23605 >KY684759 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2269/2016, complete genome Length = 30656 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >KY369906 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC622/2016, complete genome Length = 30689 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22814 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22815 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22874 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22875 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22931 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22932 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22991 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22992 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23051 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23052 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23111 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23112 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23171 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23172 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23231 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23232 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23291 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23292 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23351 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23352 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23411 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23412 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23471 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23472 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23531 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23532 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23591 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23592 AATGTTACTAGGCTGCATGATGCTTAG 23618 >KY369905 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC831/2016, complete genome Length = 30581 E-value = 0, Score = 1868, Bitscore = 1685.63, Identities = 1095/1287 (85%), Positives = 1223/1287 (95%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22814 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22815 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22874 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22875 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22931 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22932 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22991 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22992 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23051 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23052 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23111 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23112 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23171 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23172 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23231 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23232 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23291 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23292 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23351 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23352 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23411 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23412 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23471 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23472 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23531 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23532 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23591 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23592 AATGTTACTAGGCTGCATGATGCTTAG 23618 >MW532117 Human coronavirus OC43 strain OC43/China/11/2017, complete genome Length = 30695 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCT 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MW532114 Human coronavirus OC43 strain OC43/China/08/2017, complete genome Length = 30695 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++ ||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGACTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MT118692 Human coronavirus OC43 strain 2019_1540, partial genome Length = 30647 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22267 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22326 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22327 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22386 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22387 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22446 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22447 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22506 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22507 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22566 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22567 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22626 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22627 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22686 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22687 CGCAGCCTTACTTTTGTTAATGTTTCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22746 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22747 TTTTGTAAATCTGGTAGTAAGTTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22806 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22807 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22863 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22864 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22923 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22924 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22983 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 22984 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23043 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23044 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23103 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23104 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23163 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23164 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23223 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23224 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23283 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23284 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTAT 23343 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23344 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23403 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23404 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23463 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23464 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23523 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23524 AATGTTACTAGGCTGCATGATGCTTAG 23550 >MT118685 Human coronavirus OC43 strain 2019_0546, partial genome Length = 30730 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||| ||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTTCTAGTTTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22531 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22831 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22890 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22891 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22947 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22948 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23007 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23008 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23067 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23068 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23127 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23128 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23187 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23188 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23247 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23248 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23307 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23308 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23367 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23368 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23427 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23428 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23487 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23488 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23547 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23548 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23607 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23608 AATGTTACTAGGCTGCATGATGCTTAG 23634 >MT118667 Human coronavirus OC43 strain 2017_1822, partial genome Length = 30733 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22834 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22893 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22894 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22950 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22951 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23010 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23011 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23070 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||| ||||||||||||+||+|||||||| Sbjct: 23071 TCAACAGAAACCATTACCACTGGTTTTGATCTTAACTGTCATTATTTAGTTTTACCCTCT 23130 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23131 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23190 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23191 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23250 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23251 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23310 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23311 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23370 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23371 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23430 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23431 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23490 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23491 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23550 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23551 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23610 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23611 AATGTTACTAGGCTGCATGATGCTTAG 23637 >MN310478 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC0776/2019, complete genome Length = 30681 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 || |||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCCACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >MN306041 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC0810/2019, complete genome Length = 30717 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22531 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22831 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22890 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22891 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22947 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22948 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23007 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23008 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23067 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23068 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23127 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23128 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23187 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+||| Sbjct: 23188 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCT 23247 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23248 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23307 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23308 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23367 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23368 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23427 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23428 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23487 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23488 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23547 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23548 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23607 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23608 AATGTTACTAGGCTGCATGATGCTTAG 23634 >MN306036 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC0682/2019, complete genome Length = 30681 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+||||||| |||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTTTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >MN026164 Human coronavirus OC43 isolate OC43_KLF_01_2018, complete genome Length = 30777 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22408 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22467 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22468 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22527 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22528 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22587 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22588 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22647 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22648 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22707 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22708 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22767 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22768 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22827 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22828 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCAGCACAAGCTACATCT 22887 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22888 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22947 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22948 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 23004 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 23005 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23064 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||| ||||||||||||||+||||||||||||||||||+||||| Sbjct: 23065 TATTATGATCATAGTCAATACTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23124 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23125 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23184 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23185 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23244 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23245 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23304 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23305 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23364 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23365 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23424 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23425 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23484 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23485 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23544 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23545 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23604 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23605 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23664 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23665 AATGTTACTAGGCTGCATGATGCTTAG 23691 >MF374985 Human coronavirus OC43 isolate HCoV-OC43/USA/TCNP_00212/2017, complete genome Length = 30705 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22524 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22823 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22824 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22883 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22884 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22940 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22941 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23000 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23001 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23060 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +|||||||||||||| |||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23061 TCAACAGAAACCATTACCACTAGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23120 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23121 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23180 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23181 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23240 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23241 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23300 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23301 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23360 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23361 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23420 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23421 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23480 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23481 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23540 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23541 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23600 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23601 AATGTTACTAGGCTGCATGATGCTTAG 23627 >LC720427 Human coronavirus OC43 HCoVOC43_Fukushima_OR7_2020 RNA, nearly complete genome Length = 30714 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22343 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22402 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22403 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22462 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22463 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22522 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22523 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22582 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22583 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22642 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+| |+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22643 GAGGGTGTGAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22702 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22703 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22762 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22763 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22822 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22823 TTTTGTAAATCTGGTAGTAATCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22882 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22883 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22939 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22940 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22999 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23000 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23059 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23060 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23119 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23120 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23179 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23180 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23239 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23240 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23299 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23300 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23359 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23360 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23419 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23420 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23479 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23480 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGC 23539 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23540 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23599 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23600 AATGTTACTAGGCTGCATGATGCTTAG 23626 >KY967361 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2345/2015, complete genome Length = 30661 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||| ||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCTACCACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >KY967358 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2770/2015, complete genome Length = 30670 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22796 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22855 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22856 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22912 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|| ||+||||||||| Sbjct: 22913 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTTTCGAATACAAAG 22972 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22973 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23032 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23033 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23092 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23093 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23152 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23153 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23212 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23213 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23272 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23273 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23332 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23333 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23392 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23393 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23452 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23453 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23512 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23513 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23572 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23573 AATGTTACTAGGCTGCATGATGCTTAG 23599 >KY369907 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC9741/2016, complete genome Length = 30725 E-value = 0, Score = 1863, Bitscore = 1681.12, Identities = 1094/1287 (85%), Positives = 1222/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22834 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22893 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22894 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22950 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22951 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23010 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23011 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23070 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +|||||||||||||| |||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23071 TCAACAGAAACCATTACCACTAGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23130 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23131 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23190 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23191 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23250 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23251 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23310 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23311 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23370 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23371 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23430 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23431 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23490 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23491 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23550 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23551 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23610 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23611 AATGTTACTAGGCTGCATGATGCTTAG 23637 >MZ450972 Human coronavirus OC43 strain OC43/Seattle/USA/20959/2021, complete genome Length = 30688 E-value = 0, Score = 1858, Bitscore = 1676.62, Identities = 1093/1287 (84%), Positives = 1221/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22333 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22392 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22393 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22452 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22453 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22512 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||| ||||||||+|| ||| Sbjct: 22513 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGTAACTCCATTTTCAGG 22572 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22573 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22632 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22633 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22692 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22693 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22752 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22753 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22812 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22813 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22872 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22873 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22929 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22930 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22989 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22990 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23049 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23050 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23109 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23110 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23169 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23170 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23229 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23230 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAAT 23289 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23290 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23349 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23350 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23409 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23410 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23469 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+| ||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23470 ATTAATATCCCTGATTTACCCAATTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23529 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23530 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23589 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23590 AATGTTACTAGGCTGCATGATGCTTAG 23616 >MW532119 Human coronavirus OC43 strain OC43/China/10/2017, complete genome Length = 30689 E-value = 0, Score = 1858, Bitscore = 1676.62, Identities = 1093/1287 (84%), Positives = 1221/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| ||||||||| ||||||||||| |||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGCTTGGTTTTTATATGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22809 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22868 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22869 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22925 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22926 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 22985 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22986 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23045 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23046 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23105 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23106 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23165 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23166 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23225 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23226 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23285 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23286 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23345 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23346 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23405 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23406 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23465 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23466 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23525 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23526 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23585 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23586 AATGTTACTAGGCTGCATGATGCTTAG 23612 >MT118683 Human coronavirus OC43 strain 2019_0522, partial genome Length = 30721 E-value = 0, Score = 1858, Bitscore = 1676.62, Identities = 1093/1287 (84%), Positives = 1221/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| || Sbjct: 22531 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGA 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22831 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22890 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22891 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22947 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 22948 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23007 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23008 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23067 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23068 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23127 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23128 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23187 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23188 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23247 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23248 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23307 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23308 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23367 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23368 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23427 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23428 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23487 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23488 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23547 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23548 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23607 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| ||||||||||||| |||||||| Sbjct: 23608 AATGTTACTAGGCTGCATTATGCTTAG 23634 >MG977452 Human coronavirus OC43 isolate TNP 12643, complete genome Length = 30704 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22330 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22389 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22390 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22449 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22450 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22509 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22510 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22569 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22570 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22629 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22630 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22689 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22690 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22749 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22750 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22809 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22810 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22869 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22870 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22926 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22927 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22986 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22987 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23046 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 23047 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 23106 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23107 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23166 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23167 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23226 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23227 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23286 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23287 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23346 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23347 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23406 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23407 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23466 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23467 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23526 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23527 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23586 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23587 AATGTTACTAGGCTGCATGATGCTTAG 23613 >MG977449 Human coronavirus OC43 isolate TNP F1834_2, complete genome Length = 30721 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22347 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22527 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22647 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22826 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22827 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22886 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22887 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22943 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22944 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 23003 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 23004 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23063 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 23064 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 23123 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23124 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23183 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23184 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23243 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23244 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23303 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23304 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23363 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23364 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23423 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23424 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23483 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23484 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23543 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23544 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23603 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23604 AATGTTACTAGGCTGCATGATGCTTAG 23630 >MG977448 Human coronavirus OC43 isolate TNP F1833_2, partial genome Length = 30537 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22165 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22224 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22225 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22284 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22285 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22344 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22345 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22404 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22405 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22464 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22465 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22524 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22525 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22584 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22585 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22644 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22645 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22704 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22705 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22761 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22762 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22821 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22822 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22881 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 22882 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 22941 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 22942 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23001 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23002 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23061 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23062 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23121 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23122 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23181 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23182 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23241 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23242 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23301 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23302 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23361 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23362 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23421 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23422 AATGTTACTAGGCTGCATGATGCTTAG 23448 >MG977447 Human coronavirus OC43 isolate TNP F1832_2, complete genome Length = 30705 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22331 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22390 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22391 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22450 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22451 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22510 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22511 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22570 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22571 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22630 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22631 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22690 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22691 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22750 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22751 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22810 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22811 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22870 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22871 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22927 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22928 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22987 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22988 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23047 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 23048 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 23107 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23108 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23167 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23168 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23227 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23228 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23287 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23288 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23347 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23348 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23407 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23408 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23467 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23468 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23527 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23528 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23587 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23588 AATGTTACTAGGCTGCATGATGCTTAG 23614 >MG977446 Human coronavirus OC43 isolate TNP F1791_2, partial genome Length = 30514 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22135 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22194 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22195 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22254 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22255 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22314 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22315 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22374 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22375 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22434 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22435 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22494 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22495 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22554 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22555 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22614 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22615 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22674 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22675 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22731 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22732 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22791 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22792 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22851 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 22852 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 22911 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 22912 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 22971 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 22972 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23031 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23032 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23091 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23092 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23151 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23152 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23211 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23212 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23271 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23272 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23331 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23332 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23391 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23392 AATGTTACTAGGCTGCATGATGCTTAG 23418 >MG977445 Human coronavirus OC43 isolate TNP F1790_2, complete genome Length = 30677 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22305 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22364 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22365 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22424 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22425 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22484 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22485 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22544 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22545 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22604 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22605 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22664 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22665 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22724 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22725 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22784 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22785 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22844 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22845 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22901 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22902 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22961 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22962 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23021 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 23022 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 23081 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23082 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23141 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23142 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23201 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23202 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23261 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23262 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23321 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23322 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23381 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23382 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23441 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23442 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23501 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23502 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23561 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23562 AATGTTACTAGGCTGCATGATGCTTAG 23588 >MG977444 Human coronavirus OC43 isolate TNP F1778_2, complete genome Length = 30571 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1093/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22210 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22269 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22270 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22329 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22330 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22389 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22390 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22449 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22450 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22509 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22510 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22569 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22570 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22629 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22630 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22689 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22690 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22749 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|| ||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22750 CCTCAAGCTAAA-TCTGGGACTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 22806 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||| Sbjct: 22807 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAG 22866 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+|||||||||||||||||||||||+||||||||||||||||||+||||| Sbjct: 22867 TATTATGATCATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 22926 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+| +|||||||| Sbjct: 22927 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCT 22986 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 22987 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23046 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23047 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23106 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23107 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23166 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23167 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23226 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23227 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23286 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+||||| ||+||+|||||||||||| +| Sbjct: 23287 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTAT 23346 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23347 ATTAATATCCCTGATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23406 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|| | Sbjct: 23407 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGGT 23466 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| |||||||||||||||||||||| Sbjct: 23467 AATGTTACTAGGCTGCATGATGCTTAG 23493 >MN306053 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC9430/2018, complete genome Length = 30818 E-value = 0, Score = 1853, Bitscore = 1672.11, Identities = 1092/1287 (84%), Positives = 1220/1287 (94%), Gaps = 15/1287 (1%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22445 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22504 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22505 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22564 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22565 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22624 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| || Sbjct: 22625 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGA 22684 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22685 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22744 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22745 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22804 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22805 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22864 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22865 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22924 Query: 481 HUUUGUAAAUYUGGUAGU------------UUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+||||||| ||||| ||||||||+||+|| ||+||++|| Sbjct: 22925 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22984 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+|||||||| | |||+|||||||||+||||||+|||||||| Sbjct: 22985 CCTCAAGCTAAA-TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGT 23041 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||||||||||||||||||||||||||||||+||+||||||| +|||||+||||||||| Sbjct: 23042 TGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAG 23101 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 ||||||||| |+||||||| |||||||||||||||+||||||||||||||||||+||||| Sbjct: 23102 TATTATGATCATAGTCAATTTTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAAT 23161 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCU 768 |+ || +||||||||||||||||||||||+ |||||||||||||||||+||+|||||||| Sbjct: 23162 TCAACAGAAACCATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCT 23221 Query: 769 GGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGU 828 ||+||||||||||||||||||||+||||||||||||||||||||+||+|||||||||||| Sbjct: 23222 GGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGT 23281 Query: 829 CUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCC 888 |||++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+|||| Sbjct: 23282 TTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCC 23341 Query: 889 DBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAU 948 +++|++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||| Sbjct: 23342 AGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAAT 23401 Query: 949 UCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGC 1008 ||||||||+||+|||||||||||||||||||| |||||+|| ||+|||||||| |||||| Sbjct: 23402 TCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGC 23461 Query: 1009 AUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAU 1068 |||||+||||||||||||||| |+||| |+|||||+||+|||||+||||||||||||||| Sbjct: 23462 ATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTAT 23521 Query: 1069 RAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRU 1128 +|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +| Sbjct: 23522 GATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTAT 23581 Query: 1129 AUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGC 1188 |||||+| +|||||| +|||+||||||+|||||||+||+|||||| |||||||||||||| Sbjct: 23582 ATTAATATCCCTGATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGC 23641 Query: 1189 AUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAU 1248 ||+|||||||+ |+||| | ||||||||+|||||||||||||| |||||||||+|||| Sbjct: 23642 ATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGAT 23701 Query: 1249 AAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||| ||||||||||||| |||||||| Sbjct: 23702 AATGTTACTAGGCTGCATTATGCTTAG 23728 Database: nr Query=17. HE - realigned consensus sequence Length=773 Score E Sequences producing significant alignments: (Bits) Value MH741394 Yak coronavirus isolate XZ10 HE protein (HE) gene, ... 1188.8 0 MH741404 Yak coronavirus isolate YN10 HE protein (HE) gene, ... 1187.0 0 MH741384 Yak coronavirus isolate QH10 HE protein (HE) gene, ... 1182.49 0 MH741415 Yak coronavirus isolate SC9 HE protein (HE) gene, p... 1171.67 0 ALIGNMENTS >MH741394 Yak coronavirus isolate XZ10 HE protein (HE) gene, partial cds Length = 773 E-value = 0, Score = 1317, Bitscore = 1188.8, Identities = 697/773 (90%), Positives = 773/773 (100%), Gaps = 0/773 (0%) Frame = +1 Query: 58 GAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGAC 117 ||+|||||||||||||||+||||+||+||||||||||||||||||||||||||||||||| Sbjct: 1 GATAACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGAC 60 Query: 118 AGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGAC 177 |||||+|||||||||||+||||||||||+||||||+|||||+||||||||+||||||||| Sbjct: 61 AGTCGTTCAGATTGTAATCATGTTGTTAATACCAATCCCCGTAATTATTCTTATATGGAC 120 Query: 178 CUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUU 237 ||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||| Sbjct: 121 CTTAATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTT 180 Query: 238 AGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUY 297 |||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+ Sbjct: 181 AGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTT 240 Query: 298 UAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAU 357 |||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||| Sbjct: 241 TATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAAT 300 Query: 358 GAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUK 417 ||||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+ Sbjct: 301 GATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTG 360 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+| Sbjct: 361 TATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACA 420 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCU 537 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||||||| Sbjct: 421 GCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCT 480 Query: 538 WRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAG 597 ++|+|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| Sbjct: 481 AATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAG 540 Query: 598 UAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAU 657 |||||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| Sbjct: 541 TATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGAT 600 Query: 658 GAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAA 717 ||+|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|| Sbjct: 601 GATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAA 660 Query: 718 ACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAU 777 ||||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| Sbjct: 661 ACCATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTAT 720 Query: 778 UUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCU 830 ||||||||||||||+||||||||||||||||||||+||+|||||||||||||| Sbjct: 721 TTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCT 773 >MH741404 Yak coronavirus isolate YN10 HE protein (HE) gene, partial cds Length = 773 E-value = 0, Score = 1315, Bitscore = 1187.0, Identities = 697/773 (90%), Positives = 772/773 (99%), Gaps = 0/773 (0%) Frame = +1 Query: 58 GAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGAC 117 ||+|||||||||||||||+||||+||+||||||||||||||||||||||||||||||||| Sbjct: 1 GATAACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGAC 60 Query: 118 AGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGAC 177 |||||+|||||||||||+||||||||||+|||||| |||||+||||||||+||||||||| Sbjct: 61 AGTCGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGAC 120 Query: 178 CUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUU 237 ||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||| Sbjct: 121 CTTAATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTT 180 Query: 238 AGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUY 297 |||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+ Sbjct: 181 AGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTT 240 Query: 298 UAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAU 357 |||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||| Sbjct: 241 TATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAAT 300 Query: 358 GAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUK 417 ||||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+ Sbjct: 301 GATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTG 360 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+| Sbjct: 361 TATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACA 420 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCU 537 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||||||| Sbjct: 421 GCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCT 480 Query: 538 WRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAG 597 ++|+|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| Sbjct: 481 AATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAG 540 Query: 598 UAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAU 657 |||||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| Sbjct: 541 TATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGAT 600 Query: 658 GAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAA 717 ||+|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|| Sbjct: 601 GATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAA 660 Query: 718 ACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAU 777 ||||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| Sbjct: 661 ACCATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTAT 720 Query: 778 UUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCU 830 ||||||||||||||+||||||||||||||||||||+||+|||||||||||||| Sbjct: 721 TTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCT 773 >MH741384 Yak coronavirus isolate QH10 HE protein (HE) gene, partial cds Length = 773 E-value = 0, Score = 1310, Bitscore = 1182.49, Identities = 696/773 (90%), Positives = 771/773 (99%), Gaps = 0/773 (0%) Frame = +1 Query: 58 GAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGAC 117 ||+|||||||||||||||+||||+||+||||||||||||||||||||||||||||||||| Sbjct: 1 GATAACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGAC 60 Query: 118 AGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGAC 177 |||||+|||||||||||+||||||||||+|||||| |||||+||||||||+||||||||| Sbjct: 61 AGTCGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGAC 120 Query: 178 CUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUU 237 ||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||| Sbjct: 121 CTTAATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTT 180 Query: 238 AGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUY 297 |||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+ Sbjct: 181 AGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTT 240 Query: 298 UAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAU 357 |||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||| Sbjct: 241 TATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAAT 300 Query: 358 GAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUK 417 ||||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+ Sbjct: 301 GATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTG 360 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||| +|||||||||||||||+|||||||||||||||+|+|+| Sbjct: 361 TATCGCAGCCTTACTTTTGTTCATGTACCATATGTTTATAATGGCTCTGCACAATCTACA 420 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCU 537 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||||||| Sbjct: 421 GCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCT 480 Query: 538 WRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAG 597 ++|+|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| Sbjct: 481 AATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAG 540 Query: 598 UAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAU 657 |||||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| Sbjct: 541 TATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGAT 600 Query: 658 GAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAA 717 ||+|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|| Sbjct: 601 GATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAA 660 Query: 718 ACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAU 777 ||||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| Sbjct: 661 ACCATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTAT 720 Query: 778 UUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCU 830 ||||||||||||||+||||||||||||||||||||+||+|||||||||||||| Sbjct: 721 TTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCT 773 >MH741415 Yak coronavirus isolate SC9 HE protein (HE) gene, partial cds Length = 773 E-value = 0, Score = 1298, Bitscore = 1171.67, Identities = 694/773 (89%), Positives = 768/773 (99%), Gaps = 0/773 (0%) Frame = +1 Query: 58 GAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGAC 117 ||+||||| |||||||||+||||+||+||||||||||||||||||||||||||||||||| Sbjct: 1 GACAACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGAC 60 Query: 118 AGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGAC 177 |||||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| |||||| Sbjct: 61 AGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTACATGGAC 120 Query: 178 CUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUU 237 ||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||| Sbjct: 121 CTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTT 180 Query: 238 AGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUY 297 |||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+ Sbjct: 181 AGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTT 240 Query: 298 UAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAU 357 |||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||| Sbjct: 241 TATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAAT 300 Query: 358 GAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUK 417 ||||||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+ Sbjct: 301 GATATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTG 360 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+| Sbjct: 361 TATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTAAA 420 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCU 537 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||||||| Sbjct: 421 GCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCT 480 Query: 538 WRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAG 597 ++|+|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| Sbjct: 481 AATGTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAG 540 Query: 598 UAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAU 657 |||||||||||||||||||||||+||+||||||||+||||| |||||||||||||||||| Sbjct: 541 TATATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGAT 600 Query: 658 GAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAA 717 ||+|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|| Sbjct: 601 GATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAA 660 Query: 718 ACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAU 777 ||||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| Sbjct: 661 ACCATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTAT 720 Query: 778 UUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCU 830 ||||||||||||||+||||||||||||||||||||+||+|||||||||||||| Sbjct: 721 TTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCT 773 Database: nr Query=17. HE - realigned consensus sequence Length=305 Score E Sequences producing significant alignments: (Bits) Value AB242264 Canine respiratory coronavirus gene for haemaggluti... 454.834 4.52e-123 AB242263 Canine respiratory coronavirus gene for haemaggluti... 454.834 4.52e-123 ALIGNMENTS >AB242264 Canine respiratory coronavirus gene for haemagglutinin esterase, partial cds, clone: 04-009 Length = 305 E-value = 4.52e-123, Score = 503, Bitscore = 454.834, Identities = 270/305 (88%), Positives = 304/305 (99%), Gaps = 0/305 (0%) Frame = +1 Query: 466 GCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUW 525 ||||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+||+||+||+ Sbjct: 1 GCACAATCTACAGCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATA 60 Query: 526 KCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCA 585 +|||||||||||++|+|++|+||||||||||||||||+|||||||||+||||||+||||| Sbjct: 61 GCTCGTGAAGCTAATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCA 120 Query: 586 GGUUGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACA 645 |||||||||||||||||||||||||||||||||||+||+||||||||+|||||+|||||| Sbjct: 121 GGTTGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACA 180 Query: 646 AAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUC 705 ||||||||||||||+|||||||||||||||||||||||+| ||||||||||||||||+|| Sbjct: 181 AAGTATTATGATGATAGTCAATATTATTTTAATAAAGACAGTGGTGTTATTTATGGTCTC 240 Query: 706 AAUUYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCC 765 ||||++|||+||||||||||||||||||||||+||||||||||||||||||+||+||||| Sbjct: 241 AATTCTACTGAAACCATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCC 300 Query: 766 UCUGG 770 ||||| Sbjct: 301 TCTGG 305 >AB242263 Canine respiratory coronavirus gene for haemagglutinin esterase, partial cds, clone: 02/005 Length = 305 E-value = 4.52e-123, Score = 503, Bitscore = 454.834, Identities = 270/305 (88%), Positives = 304/305 (99%), Gaps = 0/305 (0%) Frame = +1 Query: 466 GCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUW 525 ||||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+||+||+||+ Sbjct: 1 GCACAATCTACAGCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATA 60 Query: 526 KCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCA 585 +|||||||||||++|+|++|+||||||||||||||||+|||||||||+||||||+||||| Sbjct: 61 GCTCGTGAAGCTAATTTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCA 120 Query: 586 GGUUGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACA 645 |||||||||||||||||||||||||||||||||||+||+||||||||+|||||+|||||| Sbjct: 121 GGTTGTGACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACA 180 Query: 646 AAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUC 705 ||||||||||||||+|||||||||||||||||||||||+||||||||||||||||||+|| Sbjct: 181 AAGTATTATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTC 240 Query: 706 AAUUYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCC 765 ||||++|||+||||||||| ||||||||||||+||||||||||||||||||+||+||||| Sbjct: 241 AATTCTACTGAAACCATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCC 300 Query: 766 UCUGG 770 ||||| Sbjct: 301 TCTGG 305 Database: nr Query=17. HE - realigned consensus sequence Length=374 Score E Sequences producing significant alignments: (Bits) Value KF850449 Rat coronavirus strain mouse_lab/USA/MG6644_HOLMES1... 157.278 1.69e-33 DQ198383 Rat coronavirus isolate BCMM hemagglutinin-esterase... 157.278 1.69e-33 ALIGNMENTS >KF850449 Rat coronavirus strain mouse_lab/USA/MG6644_HOLMES10/1996, partial genome Length = 31169 E-value = 1.69e-33, Score = 173, Bitscore = 157.278, Identities = 250/374 (66%), Positives = 277/374 (74%), Gaps = 2/374 (0%) Frame = +1 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+|| |||||||||| || |||||| ||||||||||||||||+|| || |||| + || Sbjct: 22589 GTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTAT 22648 Query: 139 GUUGUUAMUACCAAYC-CCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURR 197 || | |+|| | +| |||| ||||| +| | |||||+ |+|| +|||||++ Sbjct: 22649 GTAGAAAATAACGGTCACCCGAAATTA-GATTGGCTAGACCTTGACCCGCAATTGTGTAA 22707 Query: 198 UUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGA 257 ||+ || | || || +| || ||| ||||| |+||||||||||| || |||||+|| Sbjct: 22708 TTCAGGAAGGATTTCCGCAAAGAGTGGTAACTCTCTCTTTAGGAGTTTCCATTTTACTGA 22767 Query: 258 UUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUAC 317 |||||| || |||||||| ||||| | |||||+|| ||+||||| || +|||+||||| Sbjct: 22768 TTTTTACAACTACACAGGAGAAGGCGACCAAATTATATTTTATGAAGGAGTTAATTTTAG 22827 Query: 318 GCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAA 377 || |||| |||||||||| + +|| || |||| | | |||||| ||||| Sbjct: 22828 TCCCAGCCATGGCTTTAAATGCCTGGCTTACGGAGATAATAAAAGATGGATGGGCAATAA 22887 Query: 378 AGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGU 437 || +||||| | | +| ||| |||| ||||| +||| | ||+|| |+||||| Sbjct: 22888 AGCTCGATTTTATGCCCTAGTGTATGAGAAGATGGCCCATTATAGGAGTCTATCTTTTGT 22947 Query: 438 UAVUGUACCAUAUG 451 ||+||| | |||| Sbjct: 22948 TAATGTTGCTTATG 22961 >DQ198383 Rat coronavirus isolate BCMM hemagglutinin-esterase gene, complete cds Length = 1416 E-value = 1.69e-33, Score = 173, Bitscore = 157.278, Identities = 250/374 (66%), Positives = 277/374 (74%), Gaps = 2/374 (0%) Frame = +1 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+|| |||||||||| || |||||| ||||||||||||||||+|| || |||| + || Sbjct: 134 GTTTCACATTTAAATGATGACTGGTTTCTATTTGGTGACAGTCGTTCTGACTGTACCTAT 193 Query: 139 GUUGUUAMUACCAAYC-CCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURR 197 || | |+|| | +| |||| ||||| +| | |||||+ |+|| +|||||++ Sbjct: 194 GTAGAAAATAACGGTCACCCGAAATTA-GATTGGCTAGACCTTGACCCGCAATTGTGTAA 252 Query: 198 UUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGA 257 ||+ || | || || +| || ||| ||||| |+||||||||||| || |||||+|| Sbjct: 253 TTCAGGAAGGATTTCCGCAAAGAGTGGTAACTCTCTCTTTAGGAGTTTCCATTTTACTGA 312 Query: 258 UUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUAC 317 |||||| || |||||||| ||||| | |||||+|| ||+||||| || +|||+||||| Sbjct: 313 TTTTTACAACTACACAGGAGAAGGCGACCAAATTATATTTTATGAAGGAGTTAATTTTAG 372 Query: 318 GCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAA 377 || |||| |||||||||| + +|| || |||| | | |||||| ||||| Sbjct: 373 TCCCAGCCATGGCTTTAAATGCCTGGCTTACGGAGATAATAAAAGATGGATGGGCAATAA 432 Query: 378 AGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGU 437 || +||||| | | +| ||| |||| ||||| +||| | ||+|| |+||||| Sbjct: 433 AGCTCGATTTTATGCCCTAGTGTATGAGAAGATGGCCCATTATAGGAGTCTATCTTTTGT 492 Query: 438 UAVUGUACCAUAUG 451 ||+||| | |||| Sbjct: 493 TAATGTTGCTTATG 506 Database: nr Query=17. HE - realigned consensus sequence Length=1276 Score E Sequences producing significant alignments: (Bits) Value OK500305 Human coronavirus OC43 strain OC43/China/73/2021, c... 1705.47 0 OK500304 Human coronavirus OC43 strain OC43/China/70/2021, c... 1705.47 0 ALIGNMENTS >OK500305 Human coronavirus OC43 strain OC43/China/73/2021, complete genome Length = 30675 E-value = 0, Score = 1890, Bitscore = 1705.47, Identities = 1093/1276 (85%), Positives = 1223/1276 (95%), Gaps = 5/1276 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| || |||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTTTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAU-AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 + ++| |||||||| ||||+|||||||||+||||||+||||||||||||||||||| Sbjct: 22892 TCTGG----TATTATTACGAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTA 22947 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| | Sbjct: 22948 TATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCA 23007 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||+ || +|||| Sbjct: 23008 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAAC 23067 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+ |||||||||||||||||+||+||||||||||+|||||||| Sbjct: 23068 CATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTT 23127 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+|||||||||||| |||++||||| Sbjct: 23128 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCG 23187 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23188 TAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 23247 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+|| Sbjct: 23248 TAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAA 23307 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+||||| Sbjct: 23308 CTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGG 23367 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+|||| Sbjct: 23368 TTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAG 23427 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 ||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +|| Sbjct: 23428 CAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCC 23487 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23488 TGATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGG 23547 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| |||||| Sbjct: 23548 CGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAG 23607 Query: 1260 GCUGCAUGAUGCUUAG 1275 |||||||||||||||| Sbjct: 23608 GCTGCATGATGCTTAG 23623 >OK500304 Human coronavirus OC43 strain OC43/China/70/2021, complete genome Length = 30667 E-value = 0, Score = 1890, Bitscore = 1705.47, Identities = 1093/1276 (85%), Positives = 1223/1276 (95%), Gaps = 5/1276 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22349 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| || |||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATATTTTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22529 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22829 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22888 Query: 541 KUDRGKGAUUAUUAUUAU-AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 + ++| |||||||| ||||+|||||||||+||||||+||||||||||||||||||| Sbjct: 22889 TCTGG----TATTATTACGAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTA 22944 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| | Sbjct: 22945 TATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCA 23004 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||+ || +|||| Sbjct: 23005 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAAC 23064 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+ |||||||||||||||||+||+||||||||||+|||||||| Sbjct: 23065 CATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTT 23124 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+|||||||||||| |||++||||| Sbjct: 23125 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCG 23184 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23185 TAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 23244 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+|| Sbjct: 23245 TAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAA 23304 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+||||| Sbjct: 23305 CTATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGG 23364 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+|||| Sbjct: 23365 TTTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAG 23424 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 ||||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +|| Sbjct: 23425 CAGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCC 23484 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23485 TGATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGG 23544 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| |||||| Sbjct: 23545 CGTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAG 23604 Query: 1260 GCUGCAUGAUGCUUAG 1275 |||||||||||||||| Sbjct: 23605 GCTGCATGATGCTTAG 23620 Database: nr Query=17. HE - realigned consensus sequence Length=418 Score E Sequences producing significant alignments: (Bits) Value JF795423 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-58 hem... 625.252 1.21e-174 ALIGNMENTS >JF795423 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-58 hemagglutinin-esterase gene, partial cds Length = 418 E-value = 1.21e-174, Score = 692, Bitscore = 625.252, Identities = 371/418 (88%), Positives = 417/418 (99%), Gaps = 0/418 (0%) Frame = +1 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|||||||||||+||||||||||+||||||+|||||+||||| ||+||||||||||| Sbjct: 1 TCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCT 60 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 61 TAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 120 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 121 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTA 180 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 181 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGA 240 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 241 TATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTA 300 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+||| Sbjct: 301 TCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGC 360 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCU 537 ++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||||||| Sbjct: 361 CCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCT 418 Database: nr Query=17. HE - realigned consensus sequence Length=356 Score E Sequences producing significant alignments: (Bits) Value JF345138 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B10 h... 530.575 7.16e-146 ALIGNMENTS >JF345138 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B10 hemagglutinin-esterase gene, partial cds Length = 356 E-value = 7.16e-146, Score = 587, Bitscore = 530.575, Identities = 316/356 (88%), Positives = 354/356 (99%), Gaps = 0/356 (0%) Frame = +1 Query: 166 UCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGC 225 ||+|||||||||||+||+||+|||+|||||++||+|||+||||| |||+||||||||||| Sbjct: 1 TCTTATATGGACCTTAATCCTGCCTTGTGTGATTCTGGCAAAATTTCATCTAAAGCTGGC 60 Query: 226 AACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCAR 285 ||||||||+||||||||||||||||||||+|||||||||||||||||||||||||||||+ Sbjct: 61 AACTCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAA 120 Query: 286 CAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANU 345 |||||+||+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+| Sbjct: 121 CAAATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACT 180 Query: 346 UCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAG 405 |||||+|||||||| |||||||||||||||||||||||+||||||||||||+|||||||| Sbjct: 181 TCTGGTAGTAATGACATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAG 240 Query: 406 AAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCU 465 |||||||||||+||||||||+|||||+|||||||+|||||||||||||||+||||||||| Sbjct: 241 AATATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCT 300 Query: 466 GCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUA 521 ||||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+||+|| Sbjct: 301 GCACAATCTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATA 356 Database: nr Query=17. HE - realigned consensus sequence Length=1225 Score E Sequences producing significant alignments: (Bits) Value LC061272 Equine coronavirus RNA, complete genome, strain: To... 736.159 0 ALIGNMENTS >LC061272 Equine coronavirus RNA, complete genome, strain: Tokachi09 Length = 30782 E-value = 0, Score = 815, Bitscore = 736.159, Identities = 860/1225 (70%), Positives = 960/1225 (78%), Gaps = 2/1225 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 |||||| |+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22481 GGTTTTCAAAACCCGCCTGTCAACATAGTATCTCATGTTAATGAGGATTGGTTTTTATTT 22540 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | |||+|| ||+||||||||+||| Sbjct: 22541 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATCAATCCTCGTAATTATTCTTAT 22600 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+|| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22601 ATGGACCTTAATCCTGCGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22660 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||||||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22661 CTGTTTAGGAGTTTTCACTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22720 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+|||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22721 ATATTTTATGAGGGTGTTAATTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22780 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUG 411 ||||| |||||||||| ||||||| | +||||| | |||||| || |||| Sbjct: 22781 GATAATGCCGTTTGGATGCAAAATAAAGCCCGGTTTTATGATATTCTTTATAGGAGTATG 22840 Query: 412 GCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAA 471 ||||| ||||||||+|||||+||| |+ || | || |||+| ||| |||| Sbjct: 22841 GCTGTATATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGTACTGCTGTT 22900 Query: 472 YCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGU 531 |+|+ ++| ||||| || ||| | | |||||+||+ | +||++|| | Sbjct: 22901 GCTACTAATTTGTGTAAGCAAAGTTCTTTGACTATGAATAACCCCACTATCATAGCTAGG 22960 Query: 532 GAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGU 591 || | + |++ ||||||||||||| |||| |+|||| +|| || ||| Sbjct: 22961 GAGAGTGGGCTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGCTGT 23020 Query: 592 GACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAU 651 || |||||||| || || || ||| |||+||+|| |||||+ | || | || |||||| Sbjct: 23021 GATGAGTATATAGTTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAGTAT 23080 Query: 652 UAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYY 711 ||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || |+ Sbjct: 23081 TATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAACTCA 23140 Query: 712 ACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCCUCUGG 770 || + ||| | |||| ||||+||||||||| ||||| ||+ | |||||||| Sbjct: 23141 ACCCGTCCCACTGAGTATGGTATTGATTTTAATTGTTTTTATTATAG-AGTGCCCTCTGG 23199 Query: 771 YAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCU 830 + ||| ||||| ||| |+||||| ||||||| ||||| |+|| || ||| | Sbjct: 23200 TTTATATCAGGCCATCTCATACGAGCTGATGTTAACAGTTCCGTCTAAGATCATTTGTTT 23259 Query: 831 UARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDB 890 +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + |||++ Sbjct: 23260 GTCCAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCAGCCAG 23319 Query: 891 KCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUC 950 +| +|||||+|||||||||||+ |||| ||+||| +||||||||||||||||||||||| Sbjct: 23320 GCGTTCTGATAACATGACGGCTATTGCATGTCAATTGCCGTACTGTTATTTTCGTAATTC 23379 Query: 951 UACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAU 1010 ||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| || || Sbjct: 23380 TACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACCAGTAT 23439 Query: 1011 ACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURA 1070 |||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || | |+| Sbjct: 23440 ACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGATTTGA 23499 Query: 1071 YAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAU 1130 +|||+|||| | |+|+||||| || ||++|+| ||| | +||+||||||||||||++| | Sbjct: 23500 TAATGTTAGTACTGTTTGGCCCCTATACCCTTTTGGTAAATGCCCTACTGCTGCTAATCT 23559 Query: 1131 UAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAU 1190 | | ||||+ || ||||||+|||||||+|| |||| +|||| ||||||||| | Sbjct: 23560 TGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATTGCTTGGCGT 23619 Query: 1191 YCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAA 1250 + | ||||+| + || |||||||||||| ||| | | || ||||||||||+|||||| Sbjct: 23620 TTTGTTGGGTCTGGCTGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTGGATAA 23679 Query: 1251 UGGUACUAGGCUGCAUGAUGCUUAG 1275 |||||||||||| ||||| |||||| Sbjct: 23680 TGGTACTAGGCTTCATGAAGCTTAG 23704 Database: nr Query=17. HE - realigned consensus sequence Length=373 Score E Sequences producing significant alignments: (Bits) Value JQ918855 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-729 he... 563.036 1.21e-155 ALIGNMENTS >JQ918855 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-729 hemagglutinin-esterase (HE) gene, partial cds Length = 373 E-value = 1.21e-155, Score = 623, Bitscore = 563.036, Identities = 333/373 (89%), Positives = 372/373 (99%), Gaps = 0/373 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 TCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||||| Sbjct: 181 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 360 Query: 486 UAAAUYUGGUAGU 498 |||||+||||||| Sbjct: 361 TAAATCTGGTAGT 373 Database: nr Query=17. HE - realigned consensus sequence Length=1264 Score E Sequences producing significant alignments: (Bits) Value MZ825077 Bovine coronavirus isolate KCD GJ1 2019 hemagglutin... 1878.59 0 ALIGNMENTS >MZ825077 Bovine coronavirus isolate KCD GJ1 2019 hemagglutinin-esterase protein gene, partial cds Length = 1264 E-value = 0, Score = 2082, Bitscore = 1878.59, Identities = 1120/1264 (88%), Positives = 1258/1264 (99%), Gaps = 0/1264 (0%) Frame = +1 Query: 3 GKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAA 62 |+||||||||++|||||||||+|||||||||||+||||||||||+++|| |||||||+|| Sbjct: 1 GTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTATGTTTTGACAA 60 Query: 63 CCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCG 122 |||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||||| Sbjct: 61 CCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCG 120 Query: 123 YUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAA 182 +|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+|| Sbjct: 121 TTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAA 180 Query: 183 YCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAG 242 +||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||||| Sbjct: 181 TCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAG 240 Query: 243 UUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGA 302 ||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||||| Sbjct: 241 TTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGA 300 Query: 303 GGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAU 362 ||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||||| Sbjct: 301 GGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATAT 360 Query: 363 UUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCG 422 |||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||||| Sbjct: 361 TTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCG 420 Query: 423 CAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHU 482 |||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++| Sbjct: 421 CAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCT 480 Query: 483 UUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKU 542 ||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++|+| Sbjct: 481 TTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTT 540 Query: 543 DRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAU 602 ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||||| Sbjct: 541 TGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTATAT 600 Query: 603 CGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAG 662 ||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+|| Sbjct: 601 CGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAG 660 Query: 663 UCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAU 722 || ||||||||||||||||||+||||||||||||||||||+||||||++|||+||||||| Sbjct: 661 TCCATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACCAT 720 Query: 723 UACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGC 782 |||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||||| Sbjct: 721 TACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGC 780 Query: 783 CAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAA 842 |||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||||| Sbjct: 781 CATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAA 840 Query: 843 GGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAA 902 |||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+|| Sbjct: 841 GGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGATAA 900 Query: 903 CAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUA 962 |||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+|| Sbjct: 901 CATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTA 960 Query: 963 UGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUU 1022 ||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||||| Sbjct: 961 TGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGTTT 1020 Query: 1023 GUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAG 1082 |||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||||| Sbjct: 1021 GTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGCAG 1080 Query: 1083 URUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGA 1142 |+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||||| Sbjct: 1081 TGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGA 1140 Query: 1143 URYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGY 1202 |++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+||+ Sbjct: 1141 TGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGT 1200 Query: 1203 UGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCU 1262 ||||||||||||||||+||||||||||||| ||||||||||+||||||||||||||||| Sbjct: 1201 TGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGGCA 1260 Query: 1263 GCAU 1266 |||| Sbjct: 1261 GCAT 1264 Database: nr Query=17. HE - realigned consensus sequence Length=1234 Score E Sequences producing significant alignments: (Bits) Value OM937885 Equine coronavirus strain ECoV 2020/7881, complete ... 701.895 0 OL770366 Equine coronavirus strain ECoV 2021/464693, complet... 701.895 0 ALIGNMENTS >OM937885 Equine coronavirus strain ECoV 2020/7881, complete genome Length = 30964 E-value = 0, Score = 777, Bitscore = 701.895, Identities = 857/1234 (69%), Positives = 960/1234 (77%), Gaps = 20/1234 (1%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 ||| ||||+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22478 GGTCTTGAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22537 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | ||+ | |||+|| ||+||||||||+||| Sbjct: 22538 GGGGATAGTCGTTCTGACTGTAACCATATAAATACAATCAATCCTCGTAATTATTCTTAT 22597 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+|| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22598 ATGGACCTTAATCCTGCGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22657 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||| ||||||||||||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22658 CTGTTTAAGAGTTTTCACTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22717 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22718 ATATTTTATGAGGGTGTTAATTTTAGTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22777 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGR---UUUAUAAGAAU 408 ||| | |||||||||| ||||||| | +||||| | ||+ |||||| || | Sbjct: 22778 GATAACGCCGTTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTCTTTATAGGAGT 22834 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 |||||||| ||||||||+|||||+||| |+ || | || |||+| ||| |||| Sbjct: 22835 ATGGCTGTATATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGTACTGCT 22894 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++|||| || || || | | |||||+||+ |+| +||++|| Sbjct: 22895 GGTGCTACTAATCTTTGCAAGCAAAGTTCATTGACTATGAATAACCCCACCTTCATAGCT 22954 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | | + +|++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22955 AGGGAGGGTGGGTTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 23014 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || ||| Sbjct: 23015 TGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 23074 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 23075 TATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23134 Query: 709 UYYACUSAAACCAUUACCAC------UGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYU 761 |+ |||| | |||| |||| ||||+|||||||| ||||| ||+ | Sbjct: 23135 TC------AACCCGTCCCACGGAAGATGGTATTGATTTTAATTGCTTTTATTATAG-AGT 23187 Query: 762 ACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGC 821 ||||||||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| Sbjct: 23188 GCCCTCTGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGAT 23247 Query: 822 AAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAA 881 || ||| | +|||| |||||| |||||+||||| |||||+|||||+||+ | ||||| Sbjct: 23248 CATTTGTTTGTCTAAGCCTAAGGAATTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAA 23307 Query: 882 CAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUU 941 + |||+++| +|||||+|||||||||||+ |||| ||+||| +|||||||||||||| Sbjct: 23308 TTCAGCCAGGCGTTCTGATAACATGACGGCTATTGCATGTCAATTGCCGTACTGTTATTT 23367 Query: 942 UCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUU 1001 ||| |||||||| | |+||| || ||||||||||| || ||+|| ||+|||||||| Sbjct: 23368 TCGCAATTCTACCTCAGACTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTT 23427 Query: 1002 UACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUU 1061 ||| || |||||+||||||||||||||| |+| ||+|||||+||+|| ||+||||||| Sbjct: 23428 TACCAGTATACTCAGTGGTTTGTTATATAACTATCCCTGTTTTTCACAACAGGGTGTTTA 23487 Query: 1062 UAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGC 1121 || | |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+|||||||| Sbjct: 23488 CAGATTTGACAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGC 23547 Query: 1122 UGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUU 1181 ||||++ || | ||||+ || ||||||+|||||||+|| |||| +|||| || Sbjct: 23548 TGCTAACCTTGCGAATATTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATT 23607 Query: 1182 GCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAU 1241 ||| ||| |+ | ||| +| + || ||| |||||||| ||| | | || |||||||| Sbjct: 23608 GCTCGGCGTTTTGTTGTGTTTGGCTGTCTTAATTATTATAGCACTCCTATTTTATTTTAT 23667 Query: 1242 GGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||+|||||||||||||||||| ||||| |||||| Sbjct: 23668 GGTGGATAATGGTACTAGGCTTCATGAAGCTTAG 23701 >OL770366 Equine coronavirus strain ECoV 2021/464693, complete genome Length = 30942 E-value = 0, Score = 777, Bitscore = 701.895, Identities = 857/1234 (69%), Positives = 960/1234 (77%), Gaps = 20/1234 (1%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 ||| ||||+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22472 GGTCTTGAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22531 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | ||+ | |||+|| ||+||||||||+||| Sbjct: 22532 GGGGATAGTCGTTCTGACTGTAACCATATAAATACAATCAATCCTCGTAATTATTCTTAT 22591 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+|| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22592 ATGGACCTTAATCCTGCGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22651 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||| ||||||||||||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22652 CTGTTTAAGAGTTTTCACTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22711 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22712 ATATTTTATGAGGGTGTTAATTTTAGTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22771 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGR---UUUAUAAGAAU 408 ||| | |||||||||| ||||||| | +||||| | ||+ |||||| || | Sbjct: 22772 GATAACGCCGTTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTCTTTATAGGAGT 22828 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 |||||||| ||||||||+|||||+||| |+ || | || |||+| ||| |||| Sbjct: 22829 ATGGCTGTATATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGTACTGCT 22888 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++|||| || || || | | |||||+||+ |+| +||++|| Sbjct: 22889 GGTGCTACTAATCTTTGCAAGCAAAGTTCATTGACTATGAATAACCCCACCTTCATAGCT 22948 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | | + +|++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22949 AGGGAGGGTGGGTTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 23008 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || ||| Sbjct: 23009 TGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 23068 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 23069 TATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23128 Query: 709 UYYACUSAAACCAUUACCAC------UGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYU 761 |+ |||| | |||| |||| ||||+|||||||| ||||| ||+ | Sbjct: 23129 TC------AACCCGTCCCACGGAAGATGGTATTGATTTTAATTGCTTTTATTATAG-AGT 23181 Query: 762 ACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGC 821 ||||||||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| Sbjct: 23182 GCCCTCTGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGAT 23241 Query: 822 AAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAA 881 || ||| | +|||| |||||| |||||+||||| |||||+|||||+||+ | ||||| Sbjct: 23242 CATTTGTTTGTCTAAGCCTAAGGAATTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAA 23301 Query: 882 CAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUU 941 + |||+++| +|||||+|||||||||||+ |||| ||+||| +|||||||||||||| Sbjct: 23302 TTCAGCCAGGCGTTCTGATAACATGACGGCTATTGCATGTCAATTGCCGTACTGTTATTT 23361 Query: 942 UCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUU 1001 ||| |||||||| | |+||| || ||||||||||| || ||+|| ||+|||||||| Sbjct: 23362 TCGCAATTCTACCTCAGACTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTT 23421 Query: 1002 UACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUU 1061 ||| || |||||+||||||||||||||| |+| ||+|||||+||+|| ||+||||||| Sbjct: 23422 TACCAGTATACTCAGTGGTTTGTTATATAACTATCCCTGTTTTTCACAACAGGGTGTTTA 23481 Query: 1062 UAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGC 1121 || | |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+|||||||| Sbjct: 23482 CAGATTTGACAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGC 23541 Query: 1122 UGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUU 1181 ||||++ || | ||||+ || ||||||+|||||||+|| |||| +|||| || Sbjct: 23542 TGCTAACCTTGCGAATATTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATT 23601 Query: 1182 GCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAU 1241 ||| ||| |+ | ||| +| + || ||| |||||||| ||| | | || |||||||| Sbjct: 23602 GCTCGGCGTTTTGTTGTGTTTGGCTGTCTTAATTATTATAGCACTCCTATTTTATTTTAT 23661 Query: 1242 GGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||+|||||||||||||||||| ||||| |||||| Sbjct: 23662 GGTGGATAATGGTACTAGGCTTCATGAAGCTTAG 23695 Database: nr Query=17. HE - realigned consensus sequence Length=1205 Score E Sequences producing significant alignments: (Bits) Value KF294370 Longquan Rl rat coronavirus isolate Longquan-189 or... 481.884 3.25e-131 ALIGNMENTS >KF294370 Longquan Rl rat coronavirus isolate Longquan-189 orf1ab polyprotein gene, partial cds; and hemagglutinin-esterase, spike protein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds Length = 30678 E-value = 3.25e-131, Score = 533, Bitscore = 481.884, Identities = 790/1205 (65%), Positives = 892/1205 (74%), Gaps = 21/1205 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+| ||+|| ||||| |||| |||||||| |||||||| ||||| ||+ || ||| Sbjct: 22024 AATGTAGTTTCACATTTTAATGACGATTGGTTCTTATTTGGCGACAGCCGTAGTGACTGT 22083 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| | ||| | | ||| ||| |||||||| | |+||+ | +|| Sbjct: 22084 AACCATTT-------ACCTAAC-----AATCGTTCGTATATGGATTTGGATCCCTCTCTG 22131 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++||+ ||+|| ||||| +|||| ||||| ||||||||+|||||||| ||||| ||| Sbjct: 22132 TGTGATTCAGGTAAGATATCTTCTAAGGCTGGTAACTCCATCTTTAGGAGCTTTCATTTT 22191 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 ||+|||||||| ||||||||||| || ||| | |||||+||+||+||||| || +| |+| Sbjct: 22192 ACTGATTTTTACAATTACACAGGAGAGGGTAATCAAATTATTTTTTATGAAGGGGTCAAT 22251 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 ||||| || +||||||||||||| ||||+ + ||||| ||||||| | | ||||| || Sbjct: 22252 TTTACCCCGCATCATGCCTTTAAGTGCACTGCATCTGGAAGTAATGTTGTGTGGATTCAA 22311 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||| || +|||||| | | | ||||| | |||| | +||| | | || ||+ Sbjct: 22312 AATAAGGGTAGTTTTTACCATAAATTGTATAATAGTATGTCCCATTATAGGACGCTCACT 22371 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYU 492 |||| |+||| || ||| ||+ ||| || ||+|+|+ |++| ||||| | Sbjct: 22372 ATTGTAAATGTTCCCTATTCATATGGTGGTCAAGCTAAACCTACCACCATGTGTAAGAGT 22431 Query: 493 GGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAU 552 ||| |||| |||||| ||+||+||+| +||++|| || | | +|+|++ |||||| Sbjct: 22432 GGTTCTTTAACTCTTAACAACCCTGCCTTTATTGCTAAGGAGGTTGGTGTTAACGATTAT 22491 Query: 553 UAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUU 612 ||||| || ||| ||| |+||| |+| | |||||||| |||||||| || |||||| Sbjct: 22492 TATTACAAAAGTGAGGCTAATTTTACTCTCACTGGTTGTGATGAGTATATAGTCCCACTT 22551 Query: 613 UGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAU 672 ||||||||+||+|| || ||+ | || | || |||||||||||+|||||||||||| Sbjct: 22552 TGTATTTTTAATGGAAAATTTCTTTCCACCGGCAATTATTATGATGATAGTCAATATTAT 22611 Query: 673 UUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCA---CU 729 | ||||| ||+||||||||||||||||| +| ||||++|| | | | | | | | Sbjct: 22612 TATAATATGGATACTGGTGTTATTTATGGCTTTAATTCTAC---ATCGAGTGCTAGTGTT 22668 Query: 730 GGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCA 789 ||| ||||+|| | ||| | |||||| |+| || ||+ || ||||||||| Sbjct: 22669 GGTCTTGATTTAGAATGTAAGTATTTAAATCTCAAATCAGGCTCCTACAAAGCCATTTCT 22728 Query: 790 AAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUU 849 ||+|||||| |||| ||| | ||+| +|| || || |||||||++||| |||| ||| Sbjct: 22729 AATGAGCTACTGTTGACTATACCTATTAAGGCTATTTGTCTTAACAAGGCAAAGGCGTTT 22788 Query: 850 ACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACG 909 ||||| || ||+|||||+||+ | ||||| | | ++ ++|||||+|| | || Sbjct: 22789 GTACCTGTCCAAGTCGTTGATTCCAGATGGAATAGCGGTCGTGTTTCTGATAATAAAACT 22848 Query: 910 GCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGU 969 ||+| |||||+ || +|| | || || ||||||||| ||| +||+|| |||| Sbjct: 22849 GCTGAAGCTTGTAAATTGCCCTTTTGCTACTTTCGTAATAGCACTGGTAATTACCTTGGC 22908 Query: 970 GUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAU 1029 |||||||| |||||+|| ||+||||| ||||| ||||| | |||||||| || Sbjct: 22909 AGGTATGATATAAATCATGGCGATGCTGGATTTACCAGCATTTTGTCGGGTTTGTTGTAC 22968 Query: 1030 GAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGG 1089 |+ ||+||| | | ||+|||| |||| |||+|+|||+||| || |+|+||| Sbjct: 22969 AATGTGCCTTGTATAGCCTTTCAGGGTGCTTTTTATTATGATAATGTTACCACTGTCTGG 23028 Query: 1090 CCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCY 1149 ||| | + +| |||+ ||+||||| || ||++|||| | + | ||++|||+ Sbjct: 23029 CCTTCGTCTGGTTCTGGACACTGTCCTACAGCGTCTAATATT---ATCGTTAATATACCT 23085 Query: 1150 AUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUC 1209 | || + |||||+||+ | || +| ||||||||||| ||+ | || |+| + || || Sbjct: 23086 GTCTGCGCATATGATCCTTTGCCCATCATTTTGCTTGGTATTTTGTTAGGTATAGCAGTG 23145 Query: 1210 AUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAU 1269 | ||||| +| ||||| |||| |||||| | |+ ||||||||| |||||| ||||| Sbjct: 23146 CTTATTATAGTCTTTTTGATGTTTTATTTTTTAGTTGATAATGGTGTTAGGCTTCATGAA 23205 Query: 1270 GCUUA 1274 ||||| Sbjct: 23206 GCTTA 23210 Database: nr Query=17. HE - realigned consensus sequence Length=1228 Score E Sequences producing significant alignments: (Bits) Value LC061273 Equine coronavirus RNA, complete genome, strain: Ob... 734.356 0 LC592689 Equine coronavirus Tokyo2020 RNA, nearly complete g... 729.847 0 LC061274 Equine coronavirus RNA, complete genome, strain: Ob... 729.847 0 ALIGNMENTS >LC061273 Equine coronavirus RNA, complete genome, strain: Obihiro12-1 Length = 30916 E-value = 0, Score = 813, Bitscore = 734.356, Identities = 861/1228 (70%), Positives = 964/1228 (78%), Gaps = 8/1228 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 |||||| |+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22470 GGTTTTCAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22529 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | |||+|| ||+||||||||+||| Sbjct: 22530 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATCAATCCTCGTAATTATTCTTAT 22589 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22590 ATGGACCTTAATCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22649 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22650 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22709 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+ ||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22710 ATATTTTATGAGGGTGTTAACTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22769 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAG---RUUUAUAAGAAU 408 ||||| ||||||||||| ||||||| | +||||| | || +|||||| || | Sbjct: 22770 GATAATGCCATTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTGTTTATAGGAGT 22826 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+||| |+ || | || |||+| |||| |||| Sbjct: 22827 ATGGCTGTTTATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGCACTGCT 22886 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 22887 GTTGCTACTAATTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATAGCT 22946 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | + |++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22947 AGGGAGAGTGGGCTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 23006 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || ||| Sbjct: 23007 TGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 23066 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 23067 TATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23126 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCCUC 767 |+ || + ||| | |||| ||||+||||||||| ||||| ||+ | ||||| Sbjct: 23127 TCAACCCGTCCCACTGAGGATGGTATTGATTTTAATTGTTTTTATTATAG-AGTGCCCTC 23185 Query: 768 UGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUG 827 |||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| || || Sbjct: 23186 TGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATTTG 23245 Query: 828 UCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGC 887 | | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + || Sbjct: 23246 TTTGTCCAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCAGC 23305 Query: 888 CDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAA 947 |+++| +|||||+|||||||||||+ | || ||+||| +|||||||||||||||||||| Sbjct: 23306 CAGGCGTTCTGATAACATGACGGCTATAGCATGTCAATTGCCGTACTGTTATTTTCGTAA 23365 Query: 948 UUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAG 1007 |||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| || Sbjct: 23366 TTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACCAG 23425 Query: 1008 CAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUA 1067 |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || | Sbjct: 23426 TATACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGATT 23485 Query: 1068 URAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURR 1127 |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+||||||||||||++ Sbjct: 23486 TGATAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGCTGCTAA 23545 Query: 1128 UAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGG 1187 | || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||||| Sbjct: 23546 TCTTGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATTGCTTGG 23605 Query: 1188 CAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGA 1247 | |+ | ||||+| + || |||||||||||| ||| | | || ||||||||||+||| Sbjct: 23606 CGTTTTGTTGGGTCTGGCTGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTGGA 23665 Query: 1248 UAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||| |||||||||||| Sbjct: 23666 TAATGGTACTAGGCTTCATGATGCTTAG 23693 >LC592689 Equine coronavirus Tokyo2020 RNA, nearly complete genome Length = 30763 E-value = 0, Score = 808, Bitscore = 729.847, Identities = 860/1228 (70%), Positives = 963/1228 (78%), Gaps = 8/1228 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 |||||| |+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22381 GGTTTTCAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22440 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | |||+|| ||+||||||||+||| Sbjct: 22441 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATCAATCCTCGTAATTATTCTTAT 22500 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22501 ATGGACCTTAATCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22560 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22561 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22620 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+ ||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22621 ATATTTTATGAGGGTGTTAACTTTACTCCTAATCATGGCTTTAAATGCACCTCTTCTGGT 22680 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAG---RUUUAUAAGAAU 408 ||||| |||||||||| ||||||| | +||||| | || +|||||| || | Sbjct: 22681 GATAATGCCGTTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTGTTTATAGGAGT 22737 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+||| |+ || | || |||+| |||| |||| Sbjct: 22738 ATGGCTGTTTATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGCACTGCT 22797 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 22798 GTTGCTACTAATTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATAGCT 22857 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | + |++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22858 AGGGAGAGTGGGCTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 22917 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || ||| Sbjct: 22918 TGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 22977 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 22978 TATTATGATGATAGTATTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23037 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCCUC 767 |+ || + ||| | |||| ||||+||||||||| ||||| ||+ | ||||| Sbjct: 23038 TCAACCCGTCCCACTGAGGATGGTATTGATTTTAATTGTTTTTATTATAG-AGTGCCCTC 23096 Query: 768 UGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUG 827 |||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| || || Sbjct: 23097 TGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATTTG 23156 Query: 828 UCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGC 887 | | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + || Sbjct: 23157 TTTGTCCAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCAGC 23216 Query: 888 CDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAA 947 |+++| +|||||+|||||||||||+ | || ||+||| +|||||||||||||||||||| Sbjct: 23217 CAGGCGTTCTGATAACATGACGGCTATAGCATGTCAATTGCCGTACTGTTATTTTCGTAA 23276 Query: 948 UUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAG 1007 |||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| || Sbjct: 23277 TTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACCAG 23336 Query: 1008 CAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUA 1067 |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || | Sbjct: 23337 TATACTTAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGATT 23396 Query: 1068 URAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURR 1127 |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+||||||||||||++ Sbjct: 23397 TGATAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGCTGCTAA 23456 Query: 1128 UAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGG 1187 | || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||||| Sbjct: 23457 TCTTGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATTGCTTGG 23516 Query: 1188 CAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGA 1247 | |+ | ||||+| + || |||||||||||| ||| | | || ||||||||||+||| Sbjct: 23517 CGTTTTGTTGGGTCTGGCTGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTGGA 23576 Query: 1248 UAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||| |||||||||||| Sbjct: 23577 TAATGGTACTAGGCTTCATGATGCTTAG 23604 >LC061274 Equine coronavirus RNA, complete genome, strain: Obihiro12-2 Length = 30916 E-value = 0, Score = 808, Bitscore = 729.847, Identities = 860/1228 (70%), Positives = 963/1228 (78%), Gaps = 8/1228 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 |||||| |+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22470 GGTTTTCAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22529 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | |||+|| ||+||||||||+||| Sbjct: 22530 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATCAATCCTCGTAATTATTCTTAT 22589 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22590 ATGGACCTTAATCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22649 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22650 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22709 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+ ||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22710 ATATTTTATGAGGGTGTTAACTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22769 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAG---RUUUAUAAGAAU 408 ||||| |||||||||| ||||||| | +||||| | || +|||||| || | Sbjct: 22770 GATAATGCCGTTTGGATGCAAAATAAAGCCCGGTTTTA---TGAGATTGTTTATAGGAGT 22826 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+||| |+ || | || |||+| |||| |||| Sbjct: 22827 ATGGCTGTTTATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGCACTGCT 22886 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 22887 GTTGCTACTAATTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATAGCT 22946 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | + |++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22947 AGGGAGAGTGGGCTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 23006 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || ||| Sbjct: 23007 TGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 23066 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 23067 TATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23126 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCCUC 767 |+ || + ||| | |||| ||||+||||||||| ||||| ||+ | ||||| Sbjct: 23127 TCAACCCGTCCCACTGAGGATGGTATTGATTTTAATTGTTTTTATTATAG-AGTGCCCTC 23185 Query: 768 UGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUG 827 |||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| || || Sbjct: 23186 TGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATTTG 23245 Query: 828 UCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGC 887 | | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + || Sbjct: 23246 TTTGTCCAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCAGC 23305 Query: 888 CDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAA 947 |+++| +|||||+|||||||||||+ | || ||+||| +|||||||||||||||||||| Sbjct: 23306 CAGGCGTTCTGATAACATGACGGCTATAGCATGTCAATTGCCGTACTGTTATTTTCGTAA 23365 Query: 948 UUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAG 1007 |||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| || Sbjct: 23366 TTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACCAG 23425 Query: 1008 CAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUA 1067 |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || | Sbjct: 23426 TATACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGATT 23485 Query: 1068 URAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURR 1127 |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+||||||||||||++ Sbjct: 23486 TGATAATGTTAGTACTGTTTGGCCTCTCTACCCTTTTGGTAAATGCCCTACTGCTGCTAA 23545 Query: 1128 UAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGG 1187 | || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||||| Sbjct: 23546 TCTTGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATTGCTTGG 23605 Query: 1188 CAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGA 1247 | |+ | ||||+| + || |||||||||||| ||| | | || ||||||||||+||| Sbjct: 23606 CGTTTTGTTGGGTCTGGCTGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTGGA 23665 Query: 1248 UAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||| |||||||||||| Sbjct: 23666 TAATGGTACTAGGCTTCATGATGCTTAG 23693 Database: nr Query=17. HE - realigned consensus sequence Length=417 Score E Sequences producing significant alignments: (Bits) Value JF795427 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-725 he... 623.449 4.23e-174 ALIGNMENTS >JF795427 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-725 hemagglutinin-esterase gene, partial cds Length = 417 E-value = 4.23e-174, Score = 690, Bitscore = 623.449, Identities = 370/417 (88%), Positives = 416/417 (99%), Gaps = 0/417 (0%) Frame = +1 Query: 117 CAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGA 176 ||||||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||| Sbjct: 1 CAGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGA 60 Query: 177 CCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUU 236 |||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|| Sbjct: 61 CCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTT 120 Query: 237 UAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUU 296 ||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+|| Sbjct: 121 TAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTT 180 Query: 297 YUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAA 356 +|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||| Sbjct: 181 CTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAA 240 Query: 357 UGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGU 416 |||||||||||||||||||||||||||+||||||||||||+||||||||||||||||||| Sbjct: 241 TGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGT 300 Query: 417 KUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAH 476 +||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+ Sbjct: 301 GTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTAC 360 Query: 477 AGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGA 533 |||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||| Sbjct: 361 AGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGA 417 Database: nr Query=17. HE - realigned consensus sequence Length=362 Score E Sequences producing significant alignments: (Bits) Value JF795424 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-573 he... 542.297 1.14e-149 ALIGNMENTS >JF795424 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-573 hemagglutinin-esterase gene, partial cds Length = 362 E-value = 1.14e-149, Score = 600, Bitscore = 542.297, Identities = 321/362 (88%), Positives = 362/362 (100%), Gaps = 0/362 (0%) Frame = +1 Query: 167 CYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCA 226 |+|||||||||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||| Sbjct: 1 CTTATATGGACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCA 60 Query: 227 ACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARC 286 |||||||+||||||||||||||||||||+|||||||||||||||||||||||||||||+| Sbjct: 61 ACTCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAAC 120 Query: 287 AAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUU 346 ||||+||+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+|| Sbjct: 121 AAATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTT 180 Query: 347 CUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGA 406 ||||+||||||||||||||||||||||||||||||||+||||||||||||+||||||||| Sbjct: 181 CTGGTAGTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGA 240 Query: 407 AUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUG 466 ||||||||||+||||||||+|||||+|||||||+|||||||||||||||+|||||||||| Sbjct: 241 ATATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTG 300 Query: 467 CACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWK 526 |||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+||+||+||++ Sbjct: 301 CACAATCTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAG 360 Query: 527 CU 528 || Sbjct: 361 CT 362 Database: nr Query=17. HE - realigned consensus sequence Length=1231 Score E Sequences producing significant alignments: (Bits) Value MT820629 Betacoronavirus HKU24 isolate Lijiang-53, partial g... 526.067 8.73e-145 ALIGNMENTS >MT820629 Betacoronavirus HKU24 isolate Lijiang-53, partial genome Length = 30865 E-value = 8.73e-145, Score = 582, Bitscore = 526.067, Identities = 820/1231 (66%), Positives = 924/1231 (75%), Gaps = 14/1231 (1%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 ||||||||+||||| || | ||||+||||+||+||| | |||| |||||||| || ||| Sbjct: 22151 GGTTTTGAAAACCCGCCCATCAATGTTGTTTCTCATGTTAATGATGATTGGTTCTTGTTT 22210 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 ||||| |||||+ || |||||+||||| || || |||+||| ||||||||+||| Sbjct: 22211 GGTGATAGTCGTAGTGACTGTAACCATGTCAATAGTATCAATCCCAAAAATTATTCTTAT 22270 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+ |+||+ | +|||||++||+ || || ||||| +|||| ||||| || ||| Sbjct: 22271 ATGGACCTTGACCCATCTTTGTGTGATTCAGGAAAGATATCTTCTAAGGCTGGTAATTCC 22330 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 ||+|||||||||||||| ||| |+||||| || ||||| || |||||| | || || Sbjct: 22331 ATCTTTAGGAGTTTTCATTTTTCTGATTTCTACAATTATCAGGGTGAAGGTAACCAGATA 22390 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+||||| || +| |+|||| | ||| ||||| ||||||||||+| +||||||+ Sbjct: 22391 ATATTCTATGAAGGCGTCAATTTTTCACCTAGTCATGGGTTTAAATGCACCTCTTCTGGT 22450 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUG 411 ||||| || ||||| |||||||| +|| || | +||||||||| |||| Sbjct: 22451 GATAATGCCATCTGGATTGGTAATAAAGGTAAGTTCTATGAAAAAGTTTATAAGAGTATG 22510 Query: 412 GCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAA 471 ||||| ||||||||+|| |+ |||| |+||| || ||||| ||+ ||| | || Sbjct: 22511 GCTGTATATCGCAGTCTCTCTATTGTAACTGTTCCTTATGTGTATGCTGGAACGGCTTCT 22570 Query: 472 YCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUU-AAUAAYCCYGCMUAYAUWKCUCG 530 | |+ | +| || || ||| ||||| | ||| || ||+|| ||+| +||+ Sbjct: 22571 GCCACCTCGATATGCAAGAGTGGCAGTTT-GACCTTAAACAATCCAGCATCTATACAAAA 22629 Query: 531 UGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUG 590 ||| ++|+|++ + ||||| ||||| ||+ || ||| |+||| |+| || ||||| Sbjct: 22630 GGAAAGCAGTGTTAATAATTATATTTATATGGCAGAGGCTAATTTTACTCTTTCTGGTTG 22689 Query: 591 UGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACA---AA 647 ||| |||||||| ||||| || ||||||| +| +|| | |||+ | | || || | Sbjct: 22690 TGATGAGTATATAGTACCCCTGTGTATTTATAGTGGTATGTTCCTAGC--AT-CAGGTAC 22746 Query: 648 GUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAA 707 || || ||||+|| || ||||||| || | | +||||| | ||||||| + || Sbjct: 22747 TTACTACAATGATAGCCAGTATTATTATAGTTATAGTACTGGAGAATTTTATGGCCGTAA 22806 Query: 708 UUYYACUSAAACCAUUA--CCACUGGUUUUGAYUUUAAUUGUCAUUAU-UUASUUYUACC 764 + || +| || | |||||| ||||+| ||| || ||| |||+ | | || Sbjct: 22807 --CAACACAGTTGATAAAGCCACTGTGGTTGATTACGTTTGCCAATATCTTACCT-TGCC 22863 Query: 765 CUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAU 824 ||||| |||| | | | || ||+ || | | | || ||||| ||+||||| || Sbjct: 22864 TTCTGGAGTTTATAAATCTGTGTCTAATCAGTTGCTTCTTACAGTTCCAACGAAAGCTAT 22923 Query: 825 CUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAM 884 ||| | +||| || | ||||||+|| ||||| || |||||+||+|| |||||| + Sbjct: 22924 ATGTTTGGCCAAGTCAAAAGCTTTTACGCCAGTACAAGTAGTTGATTCTCGTTGGAACCA 22983 Query: 885 UGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCG 944 ||||+++|++|||||+|| | || ||+| || ||+||| +|| || || |||||||| Sbjct: 22984 TGCCAGGCAGTCTGATAATAAAACAGCAGAGGCATGTCAATTGCCTTATTGCTATTTTCG 23043 Query: 945 UAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUAC 1004 ||||||||| || |+||||||||| ||||||||| || ||+|| ||+| ||| ||| | Sbjct: 23044 TAATTCTACCACAGATTATGTTGGTAGTTATGATATTAACCATGGTGATGTTGGATTTTC 23103 Query: 1005 UAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAG 1064 |||||| ||+| |||||| ||| |+ | || |||||+ |+ | ||+||||| |||| Sbjct: 23104 TAGCATCCTTAAGGGTTTGACTTATAATGCGCCATGTTTTGCAAAACAGGGTGTGTTTAT 23163 Query: 1065 GUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGC 1124 ||||+|+|||+| ||||||+|+||||| +||++|+|||||+ +||+|| |||||||| Sbjct: 23164 GTATAATAATATCAGCAGTGTTTGGCCAGCCTATTCTTATGGCGAGTGCCCCACTGCTGC 23223 Query: 1125 URRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCU 1184 |++||| ||+ + || ++ ||+|||||| |||||+||+||||| |||||||||| Sbjct: 23224 TAATATAAATGTAAATGGAATTCCCATTTGTAATTATGATCCGCTACCTGTTATTTTGCT 23283 Query: 1185 UGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGW 1244 |||||| | | |+| + ||||| |||| || +| ||| | ||||| ||||| | |+ Sbjct: 23284 TGGCATATTGCTTGGTATAGCGGTTATAACCATAGTGGTTCTTTTGTTGTATTTCCTTGT 23343 Query: 1245 GGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||||||||| ||||||| |||||||||||| Sbjct: 23344 GGATAATGGTTCTAGGCTACATGATGCTTAG 23374 Database: nr Query=17. HE - realigned consensus sequence Length=412 Score E Sequences producing significant alignments: (Bits) Value JF795431 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-F-17 hem... 614.432 2.19e-171 JF795421 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-37 hem... 614.432 2.19e-171 ALIGNMENTS >JF795431 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-F-17 hemagglutinin-esterase gene, partial cds Length = 412 E-value = 2.19e-171, Score = 680, Bitscore = 614.432, Identities = 365/412 (88%), Positives = 411/412 (99%), Gaps = 0/412 (0%) Frame = +1 Query: 118 AGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGAC 177 |||||+|||||||||||+||||||||||+||||||+|||||+||||||||+||||||||| Sbjct: 1 AGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGAC 60 Query: 178 CUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUU 237 ||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||| Sbjct: 61 CTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTT 120 Query: 238 AGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUY 297 |||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+ Sbjct: 121 AGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTC 180 Query: 298 UAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAU 357 |||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||| Sbjct: 181 TATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAAT 240 Query: 358 GAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUK 417 ||||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+ Sbjct: 241 GATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTG 300 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+| Sbjct: 301 TATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACA 360 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUC 529 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||| Sbjct: 361 GCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTC 412 >JF795421 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-37 hemagglutinin-esterase gene, partial cds Length = 412 E-value = 2.19e-171, Score = 680, Bitscore = 614.432, Identities = 365/412 (88%), Positives = 411/412 (99%), Gaps = 0/412 (0%) Frame = +1 Query: 118 AGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGAC 177 |||||+|||||||||||+||||||||||+||||||+|||||+||||| ||+||||||||| Sbjct: 1 AGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGAC 60 Query: 178 CUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUU 237 ||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||| Sbjct: 61 CTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTT 120 Query: 238 AGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUY 297 |||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+ Sbjct: 121 AGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTC 180 Query: 298 UAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAU 357 |||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||| Sbjct: 181 TATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAAT 240 Query: 358 GAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUK 417 ||||||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+ Sbjct: 241 GATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTG 300 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+| Sbjct: 301 TATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACA 360 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUC 529 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||| Sbjct: 361 GCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTC 412 Database: nr Query=17. HE - realigned consensus sequence Length=1228 Score E Sequences producing significant alignments: (Bits) Value ON453891 Equine coronavirus isolate CH-CVP3, complete genome 725.339 0 ON453890 Equine coronavirus isolate CH-ZH39, complete genome 725.339 0 ALIGNMENTS >ON453891 Equine coronavirus isolate CH-CVP3, complete genome Length = 30884 E-value = 0, Score = 803, Bitscore = 725.339, Identities = 859/1228 (69%), Positives = 962/1228 (78%), Gaps = 8/1228 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 |||||| |+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22448 GGTTTTCAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22507 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | |||+|| ||+||||||||+||| Sbjct: 22508 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATCAATCCTCGTAATTATTCTTAT 22567 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+||+||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22568 ATGGACCTTAATCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22627 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22628 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22687 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+ ||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22688 ATATTTTATGAGGGTGTTAACTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22747 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAG---GCUUDUUUUACACUCAGRUUUAUAAGAAU 408 ||||| |||||||||| ||||||| | ||+| | | | | +|||||| || | Sbjct: 22748 GATAATGCCGTTTGGATGCAAAATAAAGCTCGGTTTTATGAGATT---GTTTATAGGAGT 22804 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+||| |+ || | || |||+| |||| |||| Sbjct: 22805 ATGGCTGTTTATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGCACTGCT 22864 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ |++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 22865 GTTGCTACTACTTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATAGCT 22924 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | + |++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22925 AGGGAGAGTGGGCTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 22984 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || | ||| |||+||+|| |||||+ | || | || ||| Sbjct: 22985 TGTGATGAGTATATAATTCCGTTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 23044 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 23045 TATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23104 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCCUC 767 |+ || + ||| | |||| ||||+||||||||| ||||| ||+ | ||||| Sbjct: 23105 TCAACCCGTCCCACTGAGGATGGTATTGATTTTAATTGTTTTTATTATAG-AGTGCCCTC 23163 Query: 768 UGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUG 827 |||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| || || Sbjct: 23164 TGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATTTG 23223 Query: 828 UCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGC 887 | | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + || Sbjct: 23224 TTTGTCCAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCAGC 23283 Query: 888 CDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAA 947 |+++| +|||||+|||||||||||+ | || ||+||| +|||||||||||||||||||| Sbjct: 23284 CAGGCGTTCTGATAACATGACGGCTATAGCATGTCAATTGCCGTACTGTTATTTTCGTAA 23343 Query: 948 UUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAG 1007 |||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| || Sbjct: 23344 TTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACCAG 23403 Query: 1008 CAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUA 1067 |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || | Sbjct: 23404 TATACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGATT 23463 Query: 1068 URAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURR 1127 |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+||||||||||||++ Sbjct: 23464 TGATAATGTTAGTACTGTTTGGCCTCTTTATCCTTTTGGTAAATGCCCTACTGCTGCTAA 23523 Query: 1128 UAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGG 1187 | || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||||| Sbjct: 23524 TCTTGCGAATGTTGATGGCCCAATTTGTGTGTATGACCCCTTACCCATTATATTGCTTGG 23583 Query: 1188 CAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGA 1247 | |+ | ||||+| + || |||||||||||| ||| | | || ||||||||||+||| Sbjct: 23584 CGTTTTGTTGGGTCTGGCCGTCATAATTATTATAGCACTCCTATTTTATTTTATGGTGGA 23643 Query: 1248 UAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||| |||||||||||| Sbjct: 23644 TAATGGTACTAGGCTTCATGATGCTTAG 23671 >ON453890 Equine coronavirus isolate CH-ZH39, complete genome Length = 30913 E-value = 0, Score = 803, Bitscore = 725.339, Identities = 859/1228 (69%), Positives = 962/1228 (78%), Gaps = 8/1228 (0%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 |||||| |+||||| ||| ||| | || ||+||| | |||| ||||||||||||||| Sbjct: 22468 GGTTTTCAAAACCCGCCTGTCAACATAGTATCTCATATTAATGAGGATTGGTTTTTATTT 22527 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 || || |||||+|| || |||||+||| | |+ | |||+|| ||+||||||||+||| Sbjct: 22528 GGGGATAGTCGTTCTGACTGTAACCATATAAACACAATCAATCCTCGTAATTATTCTTAT 22587 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+| +||+| +|||||++||+|||+|| || || +||||||| || || || Sbjct: 22588 ATGGACCTTAGTCCTGAGTTGTGTAATTCTGGTAAGATTTCTTCTAAAGCAGGAAATTCT 22647 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 | |||||||||||||| ||||| |||||||| || || || || ||||| ||+|||||+ Sbjct: 22648 CTGTTTAGGAGTTTTCATTTTACAGATTTTTACAACTATACTGGAGAAGGCCAGCAAATT 22707 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+|||||||||+|||+ ||||| ||| |||||| |||||||||||+| +||||||+ Sbjct: 22708 ATATTTTATGAGGGTGTTAACTTTACTCCTAATCATGGCTTTAAATGCACCGCTTCTGGT 22767 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAG---GCUUDUUUUACACUCAGRUUUAUAAGAAU 408 ||||| |||||||||| ||||||| | ||+| | | | | +|||||| || | Sbjct: 22768 GATAATGCCGTTTGGATGCAAAATAAAGCTCGGTTTTATGAGATT---GTTTATAGGAGT 22824 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+||| |+ || | || |||+| |||| |||| Sbjct: 22825 ATGGCTGTTTATCGCAGTCTTACTTTTAAGACCGTTGCTTACAATTATAGTGGCACTGCT 22884 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 |+|+ ++| ||||| || || | | |||||+||+ | | +||++|| Sbjct: 22885 GTTGCTACTAATTTGTGTAAGCAAAGTTCATTGACTATGAATAACCCCACTTTCATAGCT 22944 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | || | + |++ ||||||||||||| |||| |+|||| +|| || Sbjct: 22945 AGGGAGAGTGGGCTTACAGATTATTATTATACTAGCACAGCTAATTTTTCATTGCAGGGC 23004 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAG 648 ||||| |||||||| | || || ||| |||+||+|| |||||+ | || | || ||| Sbjct: 23005 TGTGATGAGTATATAATTCCGCTATGTTATTTTAATGGTAAGTTTCTTTCCAGTAGCAAG 23064 Query: 649 UAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAU 708 |||||||||||+||| ||||||||||||| ||+||||||| | | ||||+| || Sbjct: 23065 TATTATGATGATAGTGTTTATTATTTTAATATTGATACTGGTGAAGTATTTGGTTTTAAC 23124 Query: 709 UYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUU-UASUUYUACCCUC 767 |+ || + ||| | |||| ||||+||||||||| ||||| ||+ | ||||| Sbjct: 23125 TCAACCCGTCCCACTGAGGATGGTATTGATTTTAATTGTTTTTATTATAG-AGTGCCCTC 23183 Query: 768 UGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUG 827 |||+ ||| ||||| ||| |+||||| ||||||| ||||| |+|| || || Sbjct: 23184 TGGTTTATATCAGGCCATCTCATATGAGCTGATGTTAACAGTTCCGTCTAAGATCATTTG 23243 Query: 828 UCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGC 887 | | +|||| ||||||||||||+||||| |||||+|||||+||+ | ||||| + || Sbjct: 23244 TTTGTCCAAGCCTAAGGATTTTACTCCTGTTCAGGTTGTTGACTCTAGATGGAATTCAGC 23303 Query: 888 CDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAA 947 |+++| +|||||+|||||||||||+ | || ||+||| +|||||||||||||||||||| Sbjct: 23304 CAGGCGTTCTGATAACATGACGGCTATAGCATGTCAATTGCCGTACTGTTATTTTCGTAA 23363 Query: 948 UUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAG 1007 |||||| | |+||| || ||||||||||| || ||+|| ||+||||||||||| || Sbjct: 23364 TTCTACCTCAGATTATAAAGGGGTTTATGATATTAACCATGGTGATGCTGGTTTTACCAG 23423 Query: 1008 CAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUA 1067 |||||+||||||||||||||| |+|| ||+|||||+||+ |||+||||||| || | Sbjct: 23424 TATACTCAGTGGTTTGTTATATAATTCTCCCTGTTTTTCATGGCAGGGTGTTTACAGATT 23483 Query: 1068 URAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURR 1127 |+|+|||+|||| | |+|+||||||||+||++|+| ||| | +||+||||||||||||++ Sbjct: 23484 TGATAATGTTAGTACTGTTTGGCCTCTCTATCCTTTTGGTAAATGCCCTACTGCTGCTAA 23543 Query: 1128 UAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGG 1187 | || | ||||+ || ||||||+|||||||+|| |||| +|||| |||||||| Sbjct: 23544 TCTTGCGAATGTTGATGGTCCAATTTGTGTGTATGACCCCTTACCCATTATATTGCTTGG 23603 Query: 1188 CAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGA 1247 | |+ | ||||+| + || |||||||||||| ||| | || || ||||||||||+||| Sbjct: 23604 CGTTTTGTTGGGTCTGGCCGTCATAATTATTATAGCACTCTTATTTTATTTTATGGTGGA 23663 Query: 1248 UAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||||||||| |||||||||||| Sbjct: 23664 TAATGGTACTAGGCTTCATGATGCTTAG 23691 Database: nr Query=17. HE - realigned consensus sequence Length=469 Score E Sequences producing significant alignments: (Bits) Value MG977450 Human coronavirus OC43 isolate TNP F1835_2, partial... 617.137 6.27e-172 ALIGNMENTS >MG977450 Human coronavirus OC43 isolate TNP F1835_2, partial genome Length = 30503 E-value = 6.27e-172, Score = 683, Bitscore = 617.137, Identities = 397/469 (84%), Positives = 451/469 (96%), Gaps = 0/469 (0%) Frame = +1 Query: 807 UGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGU 866 ||||||+||+|||||||||||| |||++|||||||||+|||||||+|||||||||||+|| Sbjct: 22990 TGTTCCTACGAAAGCAATCTGTTTTAATAAGCGTAAGNATTTTACGCCTGTACAGGTTGT 23049 Query: 867 UGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACC 926 |||+||+||||||||||+||||+++|++|||||+|||||||||||+||||||||+||||| Sbjct: 23050 TGATTCGCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACC 23109 Query: 927 BCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCA 986 +|||||||||||||||||||||||||||||+||+|||||||||||||||||||| ||||| Sbjct: 23110 TCCGTACTGTTATTTTCGTAATTCTACTACCAACTATGTTGGTGTTTATGATATTAATCA 23169 Query: 987 YGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUC 1046 +|| ||+|||||||| |||||||||||+||||||||||||||| |+||| |+|||||+|| Sbjct: 23170 TGGAGATGCTGGTTTCACTAGCATACTCAGTGGTTTGTTATATAATTCATCTTGTTTTTC 23229 Query: 1047 RCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGG 1106 +|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||++|+||||| Sbjct: 23230 GCAGCAAGGTGTTTTTAGGTATGATAATATTAGCAGTGTTTGGCCTCTCTACCCCTATGG 23289 Query: 1107 MAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCC 1166 ||+||+|||||||||||| +||||||+| +|||||| +|||+||||||+|||||||+|| Sbjct: 23290 TAGATGTCCTACTGCTGCTTATATTAATATCCCTGATTTACCTATTTGTGTGTATGATCC 23349 Query: 1167 KCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUU 1226 +|||||| ||||||||||||||||+|||||||+ |+||| | ||||||||+||||||| Sbjct: 23350 GCTACCAGTTATTTTGCTTGGCATTCTTTTGGGCGTTGCCATTGTAATTATTGTAGTTTT 23409 Query: 1227 GUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||| |||||||||+||+||||| |||||||||||||||||||||| Sbjct: 23410 GTTGTTACATTTTATGGTGGNTAATGTTACTAGGCTGCATGATGCTTAG 23458 Database: nr Query=17. HE - realigned consensus sequence Length=1274 Score E Sequences producing significant alignments: (Bits) Value OL840241 Bovine coronavirus isolate KCD SJ2 2021 hemagglutin... 1901.14 0 MZ825078 Bovine coronavirus isolate KCD GJ2 2019 hemagglutin... 1878.59 0 LR721771 XXX 1873.18 0 LR721664 XXX 1873.18 0 DQ011855 Porcine hemagglutinating encephalomyelitis virus st... 1544.07 0 ALIGNMENTS >OL840241 Bovine coronavirus isolate KCD SJ2 2021 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 2107, Bitscore = 1901.14, Identities = 1131/1274 (88%), Positives = 1269/1274 (99%), Gaps = 0/1274 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|| +||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACTCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUA 1274 ||||||||||| || Sbjct: 1261 CTGCATGATGCATA 1274 >MZ825078 Bovine coronavirus isolate KCD GJ2 2019 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 2082, Bitscore = 1878.59, Identities = 1126/1274 (88%), Positives = 1264/1274 (99%), Gaps = 0/1274 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++| ||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTGCATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||| |||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTTCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+ |+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACTCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||| | Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAAG 1260 Query: 1261 CUGCAUGAUGCUUA 1274 ||||| || ||||| Sbjct: 1261 CTGCAAGAAGCTTA 1274 >LR721771 XXX Length = 1644 E-value = 0, Score = 2076, Bitscore = 1873.18, Identities = 1126/1274 (88%), Positives = 1261/1274 (98%), Gaps = 0/1274 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 289 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 348 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 349 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 408 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+|||||| |||||+||||||||+|||||||||||+ Sbjct: 409 CGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGACCTT 468 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 469 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 528 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 529 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 588 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 589 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 648 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 649 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 708 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 709 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 768 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 769 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 828 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 829 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 888 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 889 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 948 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 949 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1008 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1009 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1068 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1069 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1128 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1129 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1188 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1189 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1248 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1249 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1308 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 1309 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 1368 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 1369 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGCTATTAATACCCCT 1428 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1429 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1488 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 1489 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 1548 Query: 1261 CUGCAUGAUGCUUA 1274 |||||||||||||| Sbjct: 1549 CTGCATGATGCTTA 1562 >LR721664 XXX Length = 31190 E-value = 0, Score = 2076, Bitscore = 1873.18, Identities = 1126/1274 (88%), Positives = 1261/1274 (98%), Gaps = 0/1274 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22448 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22507 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22508 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22567 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+|||||| |||||+||||||||+|||||||||||+ Sbjct: 22568 CGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGACCTT 22627 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 22628 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 22687 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 22688 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 22747 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 22748 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 22807 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22808 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 22867 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22868 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22927 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22928 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22987 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22988 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 23047 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 23048 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23107 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23108 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23167 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23168 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 23227 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23228 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23287 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23288 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23347 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23348 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23407 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23408 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23467 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 23468 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 23527 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 23528 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGCTATTAATACCCCT 23587 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23588 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23647 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 23648 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 23707 Query: 1261 CUGCAUGAUGCUUA 1274 |||||||||||||| Sbjct: 23708 CTGCATGATGCTTA 23721 >DQ011855 Porcine hemagglutinating encephalomyelitis virus strain VW572, complete genome Length = 30480 E-value = 0, Score = 1711, Bitscore = 1544.07, Identities = 1055/1274 (82%), Positives = 1185/1274 (93%), Gaps = 0/1274 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|| |||| |+|||||| || |+|| ||||| | ++| ||||||||+ Sbjct: 22138 ATGTTTTTGCTTCCTATATTTTTTCTAGTTTGCAGCATCATTGGCACTTTTGGTTTTGAA 22197 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||| ||||||+||||+|| ||||| |||| ||||||||| ||||||| |||||| Sbjct: 22198 AACCCTCCGACCAATGTTGTTTCACATTTTAATGATGATTGGTTTCTATTTGGGGACAGT 22257 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|| || |||||+||||||||||+ |||||+|||||+||||||||+|||||||||||+ Sbjct: 22258 CGTTCTGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCTT 22317 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22318 AATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22377 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22378 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22437 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||| ||||||+||||||||||||||||||+ |+| ||||+| ||||||| Sbjct: 22438 GAGGGTGTTAATTTCACGCCTTATCATGCCTTTAAATGCACTAGTGCTGGTAATAATGAT 22497 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 || ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 22498 ATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTAC 22557 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+||| ||||| |||||+||||| || | |||+| |+ || Sbjct: 22558 CGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAACTCAACCCACCGCA 22617 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++| Sbjct: 22618 TTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAAT 22677 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||| +|||||| ||+|||| |+| |||||||||||||||||| Sbjct: 22678 GTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTAT 22737 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22738 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22797 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22798 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22857 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||| | +| +||||||||||+|||||| || Sbjct: 22858 ATTACCACTGGTTTTGATTTTAATTGTCATTATCTTGTACTACCCTCTGGTAATTATCTA 22917 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||| ||||||||||++|||||| Sbjct: 22918 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCTATCTGTCTTAATAAGCGT 22977 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22978 AAGGCTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23037 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||| ||+|||| +||||||||||||||||| ||||||||| |+||+ Sbjct: 23038 AACATGACGGCAGTTGCATGTCAACTCCCGTACTGTTATTTTCGCAATTCTACTTCCAAC 23097 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 || |||||| |||||||| | || ||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23098 TACGTTGGTATTTATGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGGT 23157 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||| |||||+|||||+|||||+||+|||||+||| |||||||||||+|+|||+| ||| Sbjct: 23158 TTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTATTTTTAGGTATGATAATGTCAGC 23217 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 | |+|+||||||||+||++|+||||| | ||+||||||||||||++||||| + + | Sbjct: 23218 ACTGTTTGGCCTCTTTATCCTTATGGTAATTGCCCTACTGCTGCTAGTATTATTTTCTTT 23277 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+| Sbjct: 23278 GATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGGT 23337 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ ||||||||| |||| + |||| |||| ||||||||||||+|||||||||||||||| Sbjct: 23338 GTCGCGGTCATAGTTATAGGTGTTTCGTTGGTATATTTTATGGTGGATAATGGTACTAGG 23397 Query: 1261 CUGCAUGAUGCUUA 1274 |||||| ||||||| Sbjct: 23398 CTGCATTATGCTTA 23411 Database: nr Query=17. HE - realigned consensus sequence Length=1213 Score E Sequences producing significant alignments: (Bits) Value MW771523 Bovine coronavirus isolate 1262 hemagglutinin-ester... 1777.6 0 ALIGNMENTS >MW771523 Bovine coronavirus isolate 1262 hemagglutinin-esterase gene, partial cds Length = 1213 E-value = 0, Score = 1970, Bitscore = 1777.6, Identities = 1069/1213 (88%), Positives = 1202/1213 (99%), Gaps = 0/1213 (0%) Frame = +1 Query: 16 AGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAU 75 ||||||||+|||||||||||+||||||||||+++||||||||||+||||||||||||||| Sbjct: 1 AGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAAT 60 Query: 76 KUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAY 135 +||||+||+||||||||||||||||||||||||||||| ||||||||+|||||||||||+ Sbjct: 61 GTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGCGACAGTCGTTCAGATTGTAAT 120 Query: 136 CAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGU 195 ||||||||||+ |||||+|||||+||||||||+|||||||||||+||+||+|||+||||| Sbjct: 121 CATGTTGTTACCACCAATCCCCGTAATTATTCTTATATGGACCTTAATCCTGCCTTGTGT 180 Query: 196 RRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACB 255 ++||+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+ Sbjct: 181 GATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACC 240 Query: 256 GAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUU 315 |||||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+|||| Sbjct: 241 GATTTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTATGAGGGTGTTAATTTT 300 Query: 316 ACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAU 375 ||||||+||||||||||||||||||+||+||||||+|||||||||||||||||||||||| Sbjct: 301 ACGCCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAAT 360 Query: 376 AAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUU 435 ||||||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+||| Sbjct: 361 AAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTT 420 Query: 436 GUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGU 495 ||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+|||| Sbjct: 421 GTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGT 480 Query: 496 AGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAU 555 |||||||||||||||||+||+||+||+||++|| ||||||++|+|++|+||||||||| Sbjct: 481 AGTTTAGTTCTTAATAACCCTGCATATATAGCTAAAGAAGCTAATTTTGGGGATTATTAT 540 Query: 556 UAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGU 615 |||||||+|||||||||+||||||+||||||||||||||||||||||||||||||||||| Sbjct: 541 TATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGT 600 Query: 616 AUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUU 675 | |||+||+||||||||+|||||+||||||||||||||||||||+||||||||||||||| Sbjct: 601 ACTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTT 660 Query: 676 AAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUU 735 ||||||||+|| |||||||||||||||+||||| ++|||+|||||||||||||||||||| Sbjct: 661 AATAAAGACACCGGTGTTATTTATGGTCTCAATGCCACTCAAACCATTACCACTGGTTTT 720 Query: 736 GAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAG 795 ||+||||||||||||||||||+||+||||||||||+||||||||||||||||||||+||| Sbjct: 721 GATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAG 780 Query: 796 CUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCU 855 |||||||||||||||||+||+||||||||||||||||++|||||||||||||||||+||| Sbjct: 781 CTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCT 840 Query: 856 GUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUU 915 ||||||||+|||||+||+||||||||||+||||+++| +|||||+|||||||||||+||| Sbjct: 841 GTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCGGTCTGATAACATGACGGCAGTT 900 Query: 916 GCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAU 975 || ||+|||||+|||||||||||||||||||||||||||||+||+||||||||||||||| Sbjct: 901 GCGTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTAT 960 Query: 976 GAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCA 1035 |||||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+||| Sbjct: 961 GATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCA 1020 Query: 1036 CCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUY 1095 ||+|||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+ Sbjct: 1021 CCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTC 1080 Query: 1096 UAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGU 1155 ||++|+|||||+||+||+||||||||||||++||||||+||+ |||||++|||+|||||| Sbjct: 1081 TACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACATCTGATGTACCTATTTGT 1140 Query: 1156 KUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUU 1215 +|||||||+||+||||||+||||||||||||||||+|||||||+||+||||||||||||| Sbjct: 1141 GTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATT 1200 Query: 1216 AUUSUAGUUUUGU 1228 |||+||||||||| Sbjct: 1201 ATTGTAGTTTTGT 1213 Database: nr Query=17. HE - realigned consensus sequence Length=414 Score E Sequences producing significant alignments: (Bits) Value JF795426 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-715 he... 618.038 1.80e-172 ALIGNMENTS >JF795426 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-715 hemagglutinin-esterase gene, partial cds Length = 414 E-value = 1.80e-172, Score = 684, Bitscore = 618.038, Identities = 367/414 (88%), Positives = 413/414 (99%), Gaps = 0/414 (0%) Frame = +1 Query: 116 ACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGG 175 |||||||+|||||||||||+||||||||||+||||||+|||||+||||| ||+||||||| Sbjct: 1 ACAGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGG 60 Query: 176 ACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYU 235 ||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+| Sbjct: 61 ACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTT 120 Query: 236 UUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYU 295 |||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+| Sbjct: 121 TTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTT 180 Query: 296 UYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUA 355 |+|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||| Sbjct: 181 TCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTA 240 Query: 356 AUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUG 415 ||||||||||||||||||||||||||||+||||||||||||+|||||||||||||||||| Sbjct: 241 ATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTG 300 Query: 416 UKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKA 475 |+||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+| Sbjct: 301 TGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTA 360 Query: 476 HAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUC 529 +|||++|||||||||+|||||||||||||||||||||+||+||+||+||++||| Sbjct: 361 CAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTC 414 Database: nr Query=17. HE - realigned consensus sequence Length=718 Score E Sequences producing significant alignments: (Bits) Value KF530059 Human coronavirus OC43 strain OC43/human/USA/951-15... 1017.48 0 ALIGNMENTS >KF530059 Human coronavirus OC43 strain OC43/human/USA/951-15/1995, partial genome Length = 30511 E-value = 0, Score = 1127, Bitscore = 1017.48, Identities = 628/718 (87%), Positives = 699/718 (97%), Gaps = 0/718 (0%) Frame = +1 Query: 558 UAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAU 617 |||||+|||||||||+||||||+||||||||||||||||||||||||||||||||||||| Sbjct: 22826 TAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTAT 22885 Query: 618 UUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAA 677 |||+||+||||||||+|||||+|||||||||||||||||| |+|||||||||||| |||| Sbjct: 22886 TTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTATAGTCAATATTATCTTAA 22945 Query: 678 UAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGA 737 ||||||+||||||||||||||||||+||||||++|| +|||||||||||||||||||||| Sbjct: 22946 TAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACCATTACCACTGGTTTTGA 23005 Query: 738 YUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCU 797 +||||||||||||||||||+||+||||||||||+||||||||||||||||||||+||||| Sbjct: 23006 TTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCT 23065 Query: 798 AUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGU 857 ||||||||||||||| ||+||||||||||||||||++|||||||||||||||||+||||| Sbjct: 23066 ATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGT 23125 Query: 858 ACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGC 917 ||||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+||||| Sbjct: 23126 ACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCGGTTGC 23185 Query: 918 UUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGA 977 |||+|||||+||||||||||||||||| |||||||||||+||+||||||||||||||||| Sbjct: 23186 TTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAACTATGTTGGTGTTTATGA 23245 Query: 978 UAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACC 1037 ||| |||||+|||||+||||||||||||||||||||+|||||||| |||||| |+ |||| Sbjct: 23246 TATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTATTATATAATGCACC 23305 Query: 1038 YUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUA 1097 +|||||+||+|||||+|| ||||||||||||+|+|||+||||||||+|+||||||||+|| Sbjct: 23306 TTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTA 23365 Query: 1098 YYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKU 1157 ++|+|||||+||+||+||||||||||||++||||||+| +|||||| +|||+||||||+| Sbjct: 23366 CCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCTGATTTACCCATTTGTGT 23425 Query: 1158 GUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAU 1217 | ||||+||+|||||| ||||||||||||||||+|||||||+ |+|||| | ||||||| Sbjct: 23426 GCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGCGTTGCGATTGTAATTAT 23485 Query: 1218 USUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |+||||||||||||||||||||||||+|||||||| |||||||||||||||||||||| Sbjct: 23486 TGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGGCTGCATGATGCTTAG 23543 Database: nr Query=17. HE - realigned consensus sequence Length=497 Score E Sequences producing significant alignments: (Bits) Value AY423274 Canine respiratory coronavirus haemagglutinin ester... 736.159 0 ALIGNMENTS >AY423274 Canine respiratory coronavirus haemagglutinin esterase gene, partial cds Length = 497 E-value = 0, Score = 815, Bitscore = 736.159, Identities = 439/497 (88%), Positives = 495/497 (99%), Gaps = 0/497 (0%) Frame = +1 Query: 418 UAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHA 477 ||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+| Sbjct: 1 TATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACA 60 Query: 478 GCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCU 537 ||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||||||| Sbjct: 61 GCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCT 120 Query: 538 WRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAG 597 ++|+|++|+||||||||||||||||+|||||||||+|| |||+||||||||||||||||| Sbjct: 121 AATTTTGGGGATTATTATTATAAGGTTGAAGCTGATTTCTATTTGTCAGGTTGTGACGAG 180 Query: 598 UAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAU 657 |||||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| Sbjct: 181 TATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGAT 240 Query: 658 GAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAA 717 ||+|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|| Sbjct: 241 GATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAA 300 Query: 718 ACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAU 777 ||||||| ||||||||||||+||||||||||||||||||+||+||||||||||+|||||| Sbjct: 301 ACCATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTAT 360 Query: 778 UUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAG 837 ||||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||| Sbjct: 361 TTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAG 420 Query: 838 CGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCU 897 ||||||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||| Sbjct: 421 CGTAAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCT 480 Query: 898 GAYAACAUGACGGCDGU 914 ||+|||||||||||+|| Sbjct: 481 GATAACATGACGGCGGT 497 Database: nr Query=17. HE - realigned consensus sequence Length=1275 Score E Sequences producing significant alignments: (Bits) Value U00735 Bovine coronavirus strain Mebus, complete genome 1925.48 0 S50936 H=hemagglutinin protein...Iorf2 protein [bovine coron... 1925.48 0 OP037432 Bovine coronavirus isolate VDC/2019/03/E, partial g... 1925.48 0 OP037431 Bovine coronavirus isolate VDC/2019/02/E, partial g... 1925.48 0 OP037428 Bovine coronavirus isolate VDC/2018/13/E, partial g... 1925.48 0 OP037426 Bovine coronavirus isolate VDC/2018/11/E, partial g... 1925.48 0 OP037425 Bovine coronavirus isolate VDC/2018/10/E, partial g... 1925.48 0 OP037424 Bovine coronavirus isolate VDC/2018/09/E, partial g... 1925.48 0 OP037423 Bovine coronavirus isolate VDC/2018/08/E, partial g... 1925.48 0 OP037422 Bovine coronavirus isolate VDC/2018/07/E, partial g... 1925.48 0 OP037417 Bovine coronavirus isolate VDC/2018/02/R, partial g... 1925.48 0 OP037415 Bovine coronavirus isolate VDC/2017/02/E&N, partial... 1925.48 0 OP037401 Bovine coronavirus isolate SDSU/2020/05/R, partial ... 1925.48 0 OP037387 Bovine coronavirus isolate MARC/2018/02/R, partial ... 1925.48 0 OP037386 Bovine coronavirus isolate MARC/2018/01/R, partial ... 1925.48 0 OP037385 Bovine coronavirus isolate MARC/2017/06/R, partial ... 1925.48 0 OP037383 Bovine coronavirus isolate MARC/2017/04/E, partial ... 1925.48 0 OP037382 Bovine coronavirus isolate MARC/2017/03/E, partial ... 1925.48 0 OP037381 Bovine coronavirus isolate MARC/2017/02/E, partial ... 1925.48 0 OP037379 Bovine coronavirus isolate MARC/2016/07/R, partial ... 1925.48 0 OP037378 Bovine coronavirus isolate MARC/2016/06/R, partial ... 1925.48 0 OP037376 Bovine coronavirus isolate MARC/2016/04/R, partial ... 1925.48 0 OP037375 Bovine coronavirus isolate MARC/2016/03/R, partial ... 1925.48 0 OP037374 Bovine coronavirus isolate MARC/2016/02/R, partial ... 1925.48 0 OP037373 Bovine coronavirus isolate MARC/2016/01/R, partial ... 1925.48 0 OP037370 Bovine coronavirus isolate MARC/2014/04/R, partial ... 1925.48 0 OP037369 Bovine coronavirus isolate MARC/2014/03/R, partial ... 1925.48 0 OP037368 Bovine coronavirus isolate MARC/2014/02/R, partial ... 1925.48 0 OP037367 Bovine coronavirus isolate MARC/2014/01/R, partial ... 1925.48 0 OP037366 Bovine coronavirus isolate MARC/2013/02/R, partial ... 1925.48 0 OP037365 Bovine coronavirus isolate MARC/2013/01/R, partial ... 1925.48 0 ON146444 Bovine coronavirus strain MARC/BRCV_2014, complete ... 1925.48 0 ON142317 Bovine coronavirus isolate BCoV4/2021/CHN, complete... 1925.48 0 ON093194 Bovine coronavirus strain BCoV2/2021/CHN, complete ... 1925.48 0 NC_003045 Bovine coronavirus isolate BCoV-ENT, complete genome 1925.48 0 MW711307 Bovine coronavirus strain SWUN/NX-YC10/2019 hemaggl... 1925.48 0 MH043954 Bovine coronavirus isolate 4-17-08, complete genome 1925.48 0 MG757141 Bovine coronavirus isolate ICSA-pool-EN, complete g... 1925.48 0 MG757139 Bovine coronavirus isolate ICSA16-EN, complete genome 1925.48 0 M76372 Bovine coronavirus strain L9 hemagglutinin/esterase g... 1925.48 0 LC642814 Bovine coronavirus BoCoV GF2020 RNA, complete genome 1925.48 0 LC494192 Bovine coronavirus TCG-33 RNA, complete genome 1925.48 0 LC494191 Bovine coronavirus TCG-32 RNA, complete genome 1925.48 0 LC494190 Bovine coronavirus TCG-31 RNA, complete genome 1925.48 0 LC494189 Bovine coronavirus TCG-30 RNA, complete genome 1925.48 0 LC494187 Bovine coronavirus TCG-28 RNA, complete genome 1925.48 0 LC494186 Bovine coronavirus TCG-27 RNA, complete genome 1925.48 0 LC494184 Bovine coronavirus TCG-25 RNA, complete genome 1925.48 0 LC494183 Bovine coronavirus TCG-24 RNA, complete genome 1925.48 0 LC494182 Bovine coronavirus TCG-23 RNA, complete genome 1925.48 0 LC494181 Bovine coronavirus TCG-22 RNA, complete genome 1925.48 0 LC494180 Bovine coronavirus TCG-21 RNA, complete genome 1925.48 0 LC494178 Bovine coronavirus TCG-19 RNA, complete genome 1925.48 0 LC494176 Bovine coronavirus TCG-17 RNA, complete genome 1925.48 0 LC494175 Bovine coronavirus TCG-18 RNA, complete genome 1925.48 0 LC494172 Bovine coronavirus TCG-6 RNA, complete genome 1925.48 0 LC494171 Bovine coronavirus TCG-16 RNA, complete genome 1925.48 0 LC494170 Bovine coronavirus TCG-15 RNA, complete genome 1925.48 0 LC494169 Bovine coronavirus TCG-14 RNA, complete genome 1925.48 0 LC494168 Bovine coronavirus TCG-13 RNA, complete genome 1925.48 0 LC494167 Bovine coronavirus TCG-12 RNA, complete genome 1925.48 0 LC494166 Bovine coronavirus TCG-11 RNA, complete genome 1925.48 0 LC494165 Bovine coronavirus TCG-10 RNA, complete genome 1925.48 0 LC494164 Bovine coronavirus TCG-1 RNA, complete genome 1925.48 0 LC494161 Bovine coronavirus TCG-5 RNA, complete genome 1925.48 0 LC494159 Bovine coronavirus SHG-6 RNA, complete genome 1925.48 0 LC494158 Bovine coronavirus SHG-5 RNA, complete genome 1925.48 0 LC494157 Bovine coronavirus SHG-4 RNA, complete genome 1925.48 0 LC494155 Bovine coronavirus SHG-2 RNA, complete genome 1925.48 0 LC494154 Bovine coronavirus SHG-1 RNA, complete genome 1925.48 0 LC494153 Bovine coronavirus IWT-27 RNA, complete genome 1925.48 0 LC494152 Bovine coronavirus IWT-26 RNA, complete genome 1925.48 0 LC494151 Bovine coronavirus IWT-25 RNA, complete genome 1925.48 0 LC494150 Bovine coronavirus IWT-24 RNA, complete genome 1925.48 0 LC494149 Bovine coronavirus IWT-23 RNA, complete genome 1925.48 0 LC494148 Bovine coronavirus IWT-22 RNA, complete genome 1925.48 0 LC494147 Bovine coronavirus IWT-17 RNA, complete genome 1925.48 0 LC494145 Bovine coronavirus IWT-21 RNA, complete genome 1925.48 0 LC494143 Bovine coronavirus IWT-19 RNA, complete genome 1925.48 0 LC494142 Bovine coronavirus IWT-18 RNA, complete genome 1925.48 0 LC494141 Bovine coronavirus IWT-15 RNA, complete genome 1925.48 0 LC494137 Bovine coronavirus IWT-11 RNA, complete genome 1925.48 0 LC494136 Bovine coronavirus IWT-8 RNA, complete genome 1925.48 0 LC494135 Bovine coronavirus IWT-7 RNA, complete genome 1925.48 0 LC494134 Bovine coronavirus IWT-6 RNA, complete genome 1925.48 0 LC494129 Bovine coronavirus IWT-1 RNA, complete genome 1925.48 0 LC494128 Bovine coronavirus IWT-10 RNA, complete genome 1925.48 0 LC494127 Bovine coronavirus IWT-9 RNA, complete genome 1925.48 0 L07747 Human enteric coronavirus 4408 hemagglutinin-esterase... 1925.48 0 KU886219 Bovine coronavirus strain BCV-AKS-01, complete genome 1925.48 0 FJ938065 Bovine respiratory coronavirus AH187, complete genome 1925.48 0 FJ938064 Bovine coronavirus E-AH187-TC, complete genome 1925.48 0 FJ938063 Bovine coronavirus E-DB2-TC, complete genome 1925.48 0 FJ425190 Sambar deer coronavirus US/OH-WD388-TC/1994 calf-pa... 1925.48 0 FJ425189 Sambar deer coronavirus US/OH-WD388/1994, complete ... 1925.48 0 FJ425188 Sambar deer coronavirus US/OH-WD388-TC/1994, comple... 1925.48 0 FJ425187 White-tailed deer coronavirus US/OH-WD470/1994, com... 1925.48 0 FJ425186 Waterbuck coronavirus US/OH-WD358/1994, complete ge... 1925.48 0 FJ425185 Waterbuck coronavirus US/OH-WD358-GnC/1994, complet... 1925.48 0 FJ425184 Waterbuck coronavirus US/OH-WD358-TC/1994, complete... 1925.48 0 FJ415324 Human enteric coronavirus 4408, complete genome 1925.48 0 EF424624 Calf-giraffe coronavirus US/OH3/2006, complete genome 1925.48 0 EF424623 Giraffe coronavirus US/OH3/2003, complete genome 1925.48 0 EF424622 Giraffe coronavirus US/OH3-TC/2006, complete genome 1925.48 0 EF424621 Sable antelope coronavirus US/OH1/2003, complete ge... 1925.48 0 EF424620 Bovine coronavirus R-AH187, complete genome 1925.48 0 EF424619 Bovine coronavirus E-AH187, complete genome 1925.48 0 EF424618 Bovine coronavirus R-AH65-TC, complete genome 1925.48 0 EF424617 Bovine coronavirus R-AH65, complete genome 1925.48 0 DQ811784 Bovine coronavirus DB2, complete genome 1925.48 0 DQ389651 Bovine coronavirus isolate KCD10 hemagglutinin-este... 1925.48 0 DQ389644 Bovine coronavirus isolate KCD3 hemagglutinin-ester... 1925.48 0 AF391542 Bovine coronavirus isolate BCoV-LUN, complete genome 1925.48 0 AF391541 Bovine coronavirus isolate BCoV-ENT, complete genome 1925.48 0 AF220295 Bovine coronavirus strain Quebec, complete genome 1925.48 0 OP037421 Bovine coronavirus isolate VDC/2018/06/E, partial g... 1923.68 0 ON142320 Bovine coronavirus isolate BCoV7/2021/CHN, complete... 1923.68 0 MW711312 Bovine coronavirus strain SWUN/NMG-D10/2020 hemaggl... 1923.68 0 MW711310 Bovine coronavirus strain SWUN/XC-7/2020 hemaggluti... 1923.68 0 MW711287 Bovine coronavirus isolate SWUN/NMG-D10/2020, compl... 1923.68 0 MK045998 Bovine coronavirus isolate HCM306 hemagglutinin-est... 1923.68 0 LC494185 Bovine coronavirus TCG-26 RNA, complete genome 1923.68 0 LC494131 Bovine coronavirus IWT-3 RNA, complete genome 1923.68 0 FJ938067 Human enteric coronavirus strain 4408, complete genome 1922.78 0 DQ389643 Bovine coronavirus isolate KCD2 hemagglutinin-ester... 1923.68 0 AF058943 Bovine coronavirus strain LSU-94LSS-051-2 32 kDa pu... 1923.68 0 OP296992 Bovine coronavirus isolate p95, complete genome 1920.97 0 OP186334 Bovine coronavirus isolate KBR-1 HE gene, complete cds 1920.97 0 OP037420 Bovine coronavirus isolate VDC/2018/05/R, partial g... 1920.97 0 OP037419 Bovine coronavirus isolate VDC/2018/04/R, partial g... 1920.97 0 OP037414 Bovine coronavirus isolate VDC/2017/01/E, partial g... 1920.97 0 OP037409 Bovine coronavirus isolate SDSU/2021/06/R, partial ... 1920.97 0 OP037407 Bovine coronavirus isolate SDSU/2021/04/R, partial ... 1920.97 0 OP037390 Bovine coronavirus isolate MARC/2019/02/R, partial ... 1920.97 0 OP037389 Bovine coronavirus isolate MARC/2019/01/R, partial ... 1920.97 0 OP037384 Bovine coronavirus isolate MARC/2017/05/R, partial ... 1920.97 0 OP037377 Bovine coronavirus isolate MARC/2016/05/R, partial ... 1920.97 0 OP037371 Bovine coronavirus isolate MARC/2015/01/R, partial ... 1920.97 0 MT543034 Bovine coronavirus strain BCV 22BC07SK hemagglutini... 1920.97 0 MK903507 Bovine coronavirus isolate BCoV/CH/HB-BD/2019 hemag... 1920.97 0 MH043955 Bovine coronavirus isolate 7-16-23, complete genome 1920.97 0 M80842 Bovine coronavirus hemagglutinin mRNA, partial cds 1920.97 0 LC494179 Bovine coronavirus TCG-20 RNA, complete genome 1920.97 0 LC494177 Bovine coronavirus TCG-9 RNA, complete genome 1920.97 0 LC494174 Bovine coronavirus TCG-8 RNA, complete genome 1920.97 0 LC494163 Bovine coronavirus TCG-2 RNA, complete genome 1920.97 0 LC494162 Bovine coronavirus TCG-3 RNA, complete genome 1920.97 0 LC494156 Bovine coronavirus SHG-3 RNA, complete genome 1920.97 0 LC494144 Bovine coronavirus IWT-20 RNA, complete genome 1920.97 0 LC494139 Bovine coronavirus IWT-13 RNA, complete genome 1920.97 0 LC494138 Bovine coronavirus IWT-12 RNA, complete genome 1920.97 0 LC494133 Bovine coronavirus IWT-5 RNA, complete genome 1920.97 0 LC494132 Bovine coronavirus IWT-4 RNA, complete genome 1920.97 0 LC494130 Bovine coronavirus IWT-2 RNA, complete genome 1920.97 0 KX982264 Bovine coronavirus isolate BCoV_2014_13, complete g... 1920.97 0 HM573321 Bovine coronavirus strain Wisent 10/01 hemagglutini... 1920.97 0 FJ938066 Bovine respiratory coronavirus bovine/US/OH-440-TC/... 1920.97 0 EU401975 Bovine coronavirus isolate 0501 hemagglutinin-ester... 1920.97 0 EU019216 Bovine coronavirus Bubalus/Italy/179/07-11 nonstruc... 1920.97 0 EF424616 Bovine coronavirus E-AH65-TC, complete genome 1920.97 0 EF424615 Bovine coronavirus E-AH65, complete genome 1920.97 0 DQ915164 Bovine coronavirus isolate Alpaca, complete genome 1920.97 0 AH014870 Bovine coronavirus strain KWD5 hemagglutinin-estera... 1920.97 0 AH014866 Bovine coronavirus strain KWD1 hemagglutinin-estera... 1920.97 0 AH010363 Bovine coronavirus hemagglutinin (HE) gene, complet... 1920.97 0 AF230528 Bovine coronavirus isolate Quebec BCQ.3708 hemagglu... 1920.97 0 AF230527 Bovine coronavirus isolate Quebec BCQ.701 hemagglut... 1920.97 0 AF230526 Bovine coronavirus isolate Quebec BCQ.376 hemagglut... 1920.97 0 AF230524 Bovine coronavirus isolate Quebec BCQ.2442 hemagglu... 1920.97 0 AF230523 Bovine coronavirus isolate Quebec BCQ.2508 hemagglu... 1920.97 0 AF058944 Bovine coronavirus strain OK-0514-3 32 kDa putative... 1920.97 0 OP037434 Bovine coronavirus isolate VDC/2019/05/E, partial g... 1919.17 0 OP037429 Bovine coronavirus isolate VDC/2019/01/E, partial g... 1919.17 0 LC494160 Bovine coronavirus TCG-4 RNA, complete genome 1919.17 0 DQ389649 Bovine coronavirus isolate KCD8 hemagglutinin-ester... 1918.27 0 DQ389647 Bovine coronavirus isolate KCD6 hemagglutinin-ester... 1919.17 0 AH010241 Bovine coronavirus isolate Ontario BCO.43277 hemagg... 1919.17 0 OP037437 Bovine coronavirus isolate VDC/2022/02/E, partial g... 1916.46 0 OP037416 Bovine coronavirus isolate VDC/2018/01/R, partial g... 1916.46 0 OP037406 Bovine coronavirus isolate SDSU/2021/03/R, partial ... 1916.46 0 OP037388 Bovine coronavirus isolate MARC/2018/05/E, partial ... 1916.46 0 OP037380 Bovine coronavirus isolate MARC/2017/01/R, partial ... 1916.46 0 OP037372 Bovine coronavirus isolate MARC/2015/02/R, partial ... 1916.46 0 MW711320 Bovine coronavirus strain SWUN/NMG-13/2020 hemagglu... 1916.46 0 MK095142 Bovine coronavirus strain BCOV-China/SWUN/LN3/2018 ... 1916.46 0 MH203059 Bovine coronavirus strain ND65 hemagglutinin-estera... 1916.46 0 MH043953 Bovine coronavirus isolate 4-17-25, complete genome 1916.46 0 MH043952 Bovine coronavirus isolate 4-17-03, complete genome 1916.46 0 MG518518 Water deer coronavirus isolate W17-18, complete genome 1916.46 0 LC494188 Bovine coronavirus TCG-29 RNA, complete genome 1916.46 0 LC494126 Bovine coronavirus GIF-1 RNA, complete genome 1916.46 0 L38963 Bovine coronavirus hemagglutinin gene, complete cds 1916.46 0 EU401979 Bovine coronavirus strain BC94 hemagglutinin-estera... 1916.46 0 EF445634 Bovine coronavirus strain 339/06 hemagglutinin-este... 1916.46 0 DQ389642 Bovine coronavirus isolate KCD1 hemagglutinin-ester... 1916.46 0 AH010063 Bovine coronavirus isolate Ontario BCO.44175 hemagg... 1916.46 0 AH010061 Bovine coronavirus isolate Quebec BCQ.7373 hemagglu... 1916.46 0 AF230525 Bovine coronavirus isolate Quebec BCQ.2439 hemagglu... 1917.37 0 OP037430 Bovine coronavirus isolate VDC/2019/01/R, partial g... 1914.66 0 OP037397 Bovine coronavirus isolate SDSU/2020/01/R, partial ... 1914.66 0 OP037395 Bovine coronavirus isolate MARC/2021/02/R, partial ... 1914.66 0 MZ100070 Tapir coronavirus 1044512-1, complete genome 1914.66 0 MW711318 Bovine coronavirus strain SWUN/NMG-9/2020 hemagglut... 1914.66 0 MW711316 Bovine coronavirus strain SWUN/NMG-7/2020 hemagglut... 1914.66 0 DQ389650 Bovine coronavirus isolate KCD9 hemagglutinin-ester... 1914.66 0 DQ389648 Bovine coronavirus isolate KCD7 hemagglutinin-ester... 1914.66 0 OP186344 Bovine coronavirus isolate KHN-13 HE gene, complete... 1911.96 0 OP186343 Bovine coronavirus isolate KHN-11 HE gene, complete... 1911.96 0 OP186342 Bovine coronavirus isolate KIS-1 HE gene, complete cds 1911.96 0 OP186341 Bovine coronavirus isolate KBR-2 HE gene, complete cds 1911.96 0 OP186340 Bovine coronavirus isolate KNS-11 HE gene, complete... 1911.96 0 OP186337 Bovine coronavirus isolate KJS-1 HE gene, complete cds 1911.96 0 OP186336 Bovine coronavirus isolate KHS HE gene, complete cds 1911.96 0 OP186333 Bovine coronavirus isolate KJS-5 HE gene, complete cds 1911.96 0 OP186331 Bovine coronavirus isolate KJS-4 HE gene, complete cds 1911.96 0 OP186330 Bovine coronavirus isolate KTY-7 HE gene, complete cds 1911.96 0 OP037436 Bovine coronavirus isolate VDC/2022/01/E, partial g... 1911.96 0 OP037399 Bovine coronavirus isolate SDSU/2020/03/R, partial ... 1912.86 0 OP037392 Bovine coronavirus isolate MARC/2020/02/R, partial ... 1911.96 0 MZ825083 Bovine coronavirus isolate KCD BA 2020 hemagglutini... 1911.96 0 MT543033 Bovine coronavirus strain BCV 31BC02Sk hemagglutini... 1911.96 0 MK095144 Bovine coronavirus strain BCOV-China/SWUN/LN5/2018 ... 1911.96 0 MK095141 Bovine coronavirus strain BCOV-China/SWUN/LN2/2018 ... 1911.96 0 MK045994 Bovine coronavirus isolate NA226 hemagglutinin-este... 1911.96 0 MG757142 Bovine coronavirus isolate ICSA-pool-LBA, complete ... 1910.15 0 MG757140 Bovine coronavirus isolate ICSA16-LBA, complete genome 1910.15 0 MG757138 Bovine coronavirus isolate ICSA21-LBA, complete genome 1911.96 0 LC494173 Bovine coronavirus TCG-7 RNA, complete genome 1911.96 0 JX860640 Canine respiratory coronavirus strain K37, complete... 1911.96 0 GQ918142 Canine respiratory coronavirus strain K37 32 kDa pr... 1911.96 0 EU401977 Bovine coronavirus isolate A3 hemagglutinin-esteras... 1911.96 0 DQ994167 Bovine coronavirus isolate KWD16 hemagglutinin-este... 1911.96 0 AH010062 Bovine coronavirus isolate Quebec BCQ.1523 hemagglu... 1911.96 0 AF339836 Bovine coronavirus isolate Quebec BCQ.3994 hemagglu... 1911.96 0 AB354579 Bovine coronavirus genomic RNA, complete genome, st... 1911.96 0 LC494140 Bovine coronavirus IWT-14 RNA, complete genome 1910.15 0 OP037441 Bovine coronavirus isolate VDC/2022/06/E, partial g... 1910.15 0 OP037438 Bovine coronavirus isolate VDC/2022/03/E, partial g... 1910.15 0 OP037408 Bovine coronavirus isolate SDSU/2021/05/R, partial ... 1910.15 0 OP037396 Bovine coronavirus isolate MARC/2021/03/R, partial ... 1910.15 0 OP037394 Bovine coronavirus isolate MARC/2021/01/R, partial ... 1910.15 0 ON792962 Bovine coronavirus strain ABGEBB-129, complete genome 1910.15 0 ON792960 Bovine coronavirus strain ABGEBB-110, complete genome 1910.15 0 ON792958 Bovine coronavirus strain ABGEBB-78, complete genome 1910.15 0 ON792953 Bovine coronavirus strain ABGEB0-88, complete genome 1910.15 0 ON792952 Bovine coronavirus strain ABGEB0-81, complete genome 1910.15 0 ON792951 Bovine coronavirus strain ABGEB0-79, complete genome 1910.15 0 ON792950 Bovine coronavirus strain ABGEB0-78, complete genome 1910.15 0 ON792949 Bovine coronavirus strain ABGEB0-74, complete genome 1910.15 0 ON792948 Bovine coronavirus strain ABGEB0-72, complete genome 1910.15 0 ON792946 Bovine coronavirus strain ABGEB0-66, complete genome 1910.15 0 ON792945 Bovine coronavirus strain ABGEB0-62, complete genome 1910.15 0 ON792944 Bovine coronavirus strain ABGEB0-59, complete genome 1910.15 0 ON792943 Bovine coronavirus strain ABGEB0-56, complete genome 1910.15 0 ON792942 Bovine coronavirus strain ABGEB0-54, complete genome 1910.15 0 ON792941 Bovine coronavirus strain ABGEB0-52, complete genome 1910.15 0 M84486 Bovine coronavirus strain LY138 hemagglutinin/esteras... 1910.15 0 AF058942 Bovine coronavirus strain LY-138 32 kDa putative no... 1910.15 0 OP186339 Bovine coronavirus isolate KSC-2 HE gene, complete cds 1907.45 0 OP186335 Bovine coronavirus isolate KBR-9 HE gene, complete cds 1907.45 0 OP186332 Bovine coronavirus isolate KBR-8 HE gene, complete cds 1907.45 0 OP186329 Bovine coronavirus isolate KGS-2 HE gene, complete cds 1907.45 0 OP037433 Bovine coronavirus isolate VDC/2019/04/E, partial g... 1907.45 0 OP037418 Bovine coronavirus isolate VDC/2018/03/R, partial g... 1907.45 0 OP020174 MAG: Betacoronavirus 1 isolate BCoV_NSW_L9, complet... 1908.35 0 MW711311 Bovine coronavirus strain SWUN/NMG-D7/2020 hemagglu... 1908.35 0 MK045996 Bovine coronavirus isolate HCM304 hemagglutinin-est... 1907.45 0 MH203061 Bovine coronavirus strain PL84 hemagglutinin-estera... 1907.45 0 DQ994168 Bovine coronavirus isolate KWD17 hemagglutinin-este... 1907.45 0 DQ994162 Bovine coronavirus isolate KWD11 hemagglutinin-este... 1907.45 0 DQ389646 Bovine coronavirus isolate KCD5 hemagglutinin-ester... 1907.45 0 AH014875 Bovine coronavirus strain KWD10 hemagglutinin-ester... 1907.45 0 AH014874 Bovine coronavirus strain KWD9 hemagglutinin-estera... 1907.45 0 AH014873 Bovine coronavirus strain KWD8 hemagglutinin-estera... 1907.45 0 AH014872 Bovine coronavirus strain KWD7 hemagglutinin-estera... 1907.45 0 OP186338 Bovine coronavirus isolate KBR-12 HE gene, complete... 1905.64 0 OP037439 Bovine coronavirus isolate VDC/2022/04/E, partial g... 1905.64 0 ON792964 Bovine coronavirus strain ABGEDB-260, complete genome 1905.64 0 ON792963 Bovine coronavirus strain ABGEDB-205, complete genome 1905.64 0 ON792957 Bovine coronavirus strain ABGEB0-128, complete genome 1905.64 0 ON792947 Bovine coronavirus strain ABGEB0-70, complete genome 1905.64 0 OL840244 Bovine coronavirus isolate KCD CW31 2021 hemaggluti... 1905.64 0 MW711315 Bovine coronavirus strain SWUN/NMG-17/2020 hemagglu... 1905.64 0 MW711313 Bovine coronavirus strain SWUN/NMG-4/2020 hemagglut... 1905.64 0 OP037427 Bovine coronavirus isolate VDC/2018/12/E, partial g... 1902.94 0 OP020177 MAG: Betacoronavirus 1 isolate BCoV_NSW_L4, complet... 1903.84 0 OP020176 MAG: Betacoronavirus 1 isolate BCoV_NSW_L3, complet... 1903.84 0 ON142316 Bovine coronavirus isolate BCoV3/2021/CHN, complete... 1903.84 0 MK046001 Bovine coronavirus isolate HT316 hemagglutinin-este... 1902.94 0 MK045992 Bovine coronavirus isolate MC199 hemagglutinin-este... 1902.94 0 MH203063 Bovine coronavirus strain BL104 hemagglutinin-ester... 1902.94 0 MH203060 Bovine coronavirus strain PL83 hemagglutinin-estera... 1902.94 0 AH014867 Bovine coronavirus strain KWD2 hemagglutinin-estera... 1902.94 0 AH010256 Bovine coronavirus isolate Winter dysentery bovine ... 1902.04 0 OP037442 Bovine coronavirus isolate VDC/2022/07/E, partial g... 1901.14 0 ON792961 Bovine coronavirus strain ABGEBB-115, complete genome 1901.14 0 ON792956 Bovine coronavirus strain ABGEB0-122, complete genome 1901.14 0 KF906250 Dromedary camel coronavirus HKU23 strain HKU23-362F... 1901.14 0 OP037435 Bovine coronavirus isolate VDC/2019/06/E, partial g... 1898.43 0 OP037403 Bovine coronavirus isolate SDSU/2020/07/R, partial ... 1898.43 0 OP020175 MAG: Betacoronavirus 1 isolate BCoV_NSW_L1, complet... 1899.33 0 ON142319 Bovine coronavirus isolate BCoV6/2021/CHN, complete... 1899.33 0 OL840240 Bovine coronavirus isolate KCD GJ4 2021 hemagglutin... 1898.43 0 MW711314 Bovine coronavirus strain SWUN/NMG-15/2020 hemagglu... 1899.33 0 MK045995 Bovine coronavirus isolate HT293 hemagglutinin-este... 1898.43 0 GQ918143 Canine respiratory coronavirus strain K39 32 kDa pr... 1898.43 0 AH014869 Bovine coronavirus strain KWD4 hemagglutinin-estera... 1897.53 0 ON792959 Bovine coronavirus strain ABGEBB-108, complete genome 1896.63 0 ON792955 Bovine coronavirus strain ABGEB0-116, complete genome 1896.63 0 ON792954 Bovine coronavirus strain ABGEB0-110, complete genome 1896.63 0 MF593476 Camel coronavirus HKU23 polyprotein ORF1ab (orf1ab)... 1896.63 0 KF906249 Dromedary camel coronavirus HKU23 strain HKU23-265F... 1896.63 0 MK046000 Bovine coronavirus isolate HT315 hemagglutinin-este... 1893.92 0 AH014868 Bovine coronavirus strain KWD3 hemagglutinin-estera... 1893.92 0 KT368891 Camel coronavirus HKU23 isolate camel/Riyadh/Ry123/... 1892.12 0 GQ918141 Canine respiratory coronavirus strain K9 32 kDa pro... 1892.12 0 ON133844 Canine respiratory coronavirus isolate USA 5, parti... 1889.41 0 MN982191 Bovine coronavirus isolate BCOV-China/SWUN/B2/2018 ... 1890.32 0 MK095140 Bovine coronavirus strain BCOV-China/SWUN/LN1/2018 ... 1888.51 0 KU558922 Betacoronavirus 1 isolate Buffalo coronavirus B1-24... 1887.61 0 KM985632 Bovine coronavirus strain HLJ-14/CHN hemagglutinin ... 1885.81 0 MW711317 Bovine coronavirus strain SWUN/NMG-8/2020 hemagglut... 1885.81 0 MN982198 Bovine coronavirus isolate BCOV-China/SWUN/A1/2018,... 1885.81 0 MN982197 Bovine coronavirus isolate BCOV-China/SWUN/B10/2018... 1885.81 0 MN982196 Bovine coronavirus isolate BCOV-China/SWUN/B9/2018 ... 1885.81 0 MN982194 Bovine coronavirus isolate BCOV-China/SWUN/B5/2018 ... 1885.81 0 MN982189 Bovine coronavirus isolate BCOV-China/SWUN/A9/2018 ... 1885.81 0 MK095138 Bovine coronavirus strain BCOV-China/SWUN/SX1/2018 ... 1885.81 0 ON133845 Canine respiratory coronavirus isolate USA 1, parti... 1883.1 0 MZ825082 Bovine coronavirus isolate KCD GJ2 2020 hemagglutin... 1883.1 0 MK095145 Bovine coronavirus strain BCOV-China/SWUN/HN1/2018 ... 1884.0 0 EU999954 Canine respiratory coronavirus strain 240/05 32 kDa... 1883.1 0 ON142315 Bovine coronavirus isolate BCoV1/2021/CHN, complete... 1881.3 0 MW711319 Bovine coronavirus strain SWUN/NMG-10/2020 hemagglu... 1881.3 0 KU558923 Betacoronavirus 1 isolate Buffalo coronavirus B1-28... 1881.3 0 DQ682406 Canine respiratory coronavirus isolate 4182 32 kDa ... 1881.3 0 MW711306 Bovine coronavirus strain SWUN/HN-KF3/2019 hemagglu... 1879.49 0 MK095147 Bovine coronavirus strain BCOV-China/SWUN/HN3/2018 ... 1879.49 0 MK095135 Bovine coronavirus strain BCOV-China/SWUN/SC1/2017 ... 1879.49 0 LR721767 XXX 1879.49 0 MW711305 Bovine coronavirus strain SWUN/HN-2-B12/2019 hemagg... 1877.69 0 OP037402 Bovine coronavirus isolate SDSU/2020/06/R, partial ... 1883.1 0 MN982192 Bovine coronavirus isolate BCOV-China/SWUN/B3/2018 ... 1876.79 0 MN982188 Bovine coronavirus isolate BCOV-China/SWUN/A8/2018 ... 1876.79 0 MN982187 Bovine coronavirus isolate BCOV-China/SWUN/A7/2018 ... 1876.79 0 MN982183 Bovine coronavirus isolate BCOV-China/SWUN/A3/2018 ... 1876.79 0 LR721756 XXX 1875.89 0 ON133847 Canine respiratory coronavirus isolate USA 3, parti... 1874.08 0 ON133846 Canine respiratory coronavirus isolate USA 2, parti... 1874.08 0 MH249786 Canine respiratory coronavirus isolate NZ.046/16, p... 1873.18 0 LR721766 XXX 1874.99 0 LR721663 XXX 1874.99 0 MW711309 Bovine coronavirus strain SWUN/NX-YCP9/2019 hemaggl... 1873.18 0 MN982195 Bovine coronavirus isolate BCOV-China/SWUN/B6/2018 ... 1872.28 0 MN982193 Bovine coronavirus isolate BCOV-China/SWUN/B4/2018 ... 1872.28 0 MN982185 Bovine coronavirus isolate BCOV-China/SWUN/A5/2018 ... 1872.28 0 MN982184 Bovine coronavirus isolate BCOV-China/SWUN/A4/2018 ... 1872.28 0 MN982182 Bovine coronavirus isolate BCOV-China/SWUN/A2/2018 ... 1872.28 0 MH203062 Bovine coronavirus strain DT97 hemagglutinin-estera... 1871.38 0 KX432213 Canine respiratory coronavirus strain BJ232, comple... 1869.58 0 MW711308 Bovine coronavirus strain SWUN/NX-YCP7/2019 hemaggl... 1868.67 0 ON133848 Canine respiratory coronavirus isolate USA 4, parti... 1852.44 0 MH810163 Yak coronavirus strain YAK/HY24/CH/2017, complete g... 1847.03 0 M76373 Human coronavirus OC43 hemagglutinin-esterase (HE) ge... 1807.36 0 NC_006213 Human coronavirus OC43 strain ATCC VR-759, complet... 1783.01 0 AY585229 Human coronavirus OC43 serotype OC43-Paris, complet... 1783.01 0 AY391777 Human coronavirus OC43, complete genome 1783.01 0 ON376725 Human coronavirus OC43 strain MA-P9, complete genome 1778.51 0 ON376724 Human coronavirus OC43 strain WT-P0, complete genome 1778.51 0 OK662397 Human coronavirus OC43 strain TKU-2021A, complete g... 1778.51 0 KF530079 Human coronavirus OC43 strain OC43/human/USA/913-29... 1778.51 0 MN514963 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU... 1774.9 0 KF530094 Human coronavirus OC43 strain OC43/human/USA/912-36... 1774.0 0 KF530089 Human coronavirus OC43 strain OC43/human/USA/911-66... 1774.0 0 KF530082 Human coronavirus OC43 strain OC43/human/USA/912-11... 1774.0 0 KF530093 Human coronavirus OC43 strain OC43/human/USA/832-27... 1770.39 0 MN514965 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU... 1770.39 0 MN514964 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU... 1770.39 0 KF530091 Human coronavirus OC43 strain OC43/human/USA/911-58... 1767.69 0 KF530076 Human coronavirus OC43 strain OC43/human/USA/911-11... 1767.69 0 KF530071 Human coronavirus OC43 strain OC43/human/USA/925-1/... 1767.69 0 KF530086 Human coronavirus OC43 strain OC43/human/USA/872-5/... 1765.88 0 KF530085 Human coronavirus OC43 strain OC43/human/USA/871-25... 1765.88 0 KF530077 Human coronavirus OC43 strain OC43/human/USA/873-16... 1765.88 0 KF530096 Human coronavirus OC43 strain OC43/human/USA/911-38... 1764.98 0 KF530088 Human coronavirus OC43 strain OC43/human/USA/901-54... 1765.88 0 KF530067 Human coronavirus OC43 strain OC43/human/USA/912-10... 1764.98 0 MN514967 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU... 1765.88 0 MN514962 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU... 1763.18 0 JN874560 Rabbit coronavirus HKU14 strain HKU14-3, complete g... 1763.18 0 KF530097 Human coronavirus OC43 strain OC43/human/USA/9211-4... 1761.37 0 KF530087 Human coronavirus OC43 strain OC43/human/USA/873-6/... 1761.37 0 KF530083 Human coronavirus OC43 strain OC43/human/USA/873-19... 1761.37 0 KF530074 Human coronavirus OC43 strain OC43/human/USA/9212-3... 1761.37 0 KF530060 Human coronavirus OC43 strain OC43/human/USA/851-15... 1761.37 0 KF530095 Human coronavirus OC43 strain OC43/human/USA/912-6/... 1760.47 0 KF530090 Human coronavirus OC43 strain OC43/human/USA/931-85... 1756.87 0 KF530073 Human coronavirus OC43 strain OC43/human/USA/8912-3... 1756.87 0 KF530066 Human coronavirus OC43 strain OC43/human/USA/901-33... 1756.87 0 KF530065 Human coronavirus OC43 strain OC43/human/USA/901-41... 1756.87 0 KF530061 Human coronavirus OC43 strain OC43/human/USA/901-43... 1756.87 0 NC_017083 Rabbit coronavirus HKU14, complete genome 1755.06 0 KF530075 Human coronavirus OC43 strain OC43/human/USA/953-23... 1752.36 0 JN874561 Rabbit coronavirus HKU14 strain HKU14-8, complete g... 1749.65 0 KF530078 Human coronavirus OC43 strain OC43/human/USA/9612-2... 1747.85 0 KF530064 Human coronavirus OC43 strain OC43/human/USA/9612-9... 1747.85 0 MN026165 Human coronavirus OC43 isolate OC43_KLF_02_2017, pa... 1737.93 0 KY014281 Human coronavirus OC43 isolate 2002-04, complete ge... 1743.34 0 KF530092 Human coronavirus OC43 strain OC43/human/USA/008-5/... 1743.34 0 KF530080 Human coronavirus OC43 strain OC43/human/USA/9712-3... 1743.34 0 KF530072 Human coronavirus OC43 strain OC43/human/USA/9712-1... 1743.34 0 KF530098 Human coronavirus OC43 strain OC43/human/USA/965-6/... 1735.23 0 AY903459 Human coronavirus OC43 strain 87309 Belgium 2003, c... 1736.13 0 KY967360 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1733.42 0 KY014282 Human coronavirus OC43 isolate 2007-09, complete ge... 1733.42 0 KF923900 Human coronavirus OC43 isolate 3647/2006, complete ... 1734.32 0 KF923899 Human coronavirus OC43 isolate 3582/2006, complete ... 1734.32 0 KF572664 Human coronavirus OC43 strain 229_05 hemagglutinin-... 1734.32 0 JN129834 Human coronavirus OC43 strain HK04-01, complete genome 1734.32 0 KF530084 Human coronavirus OC43 strain OC43/human/USA/951-18... 1730.72 0 KF530070 Human coronavirus OC43 strain OC43/human/USA/991-19... 1731.62 0 KF530068 Human coronavirus OC43 strain OC43/human/USA/007-11... 1731.62 0 MT118672 Human coronavirus OC43 strain 2018_8663, partial ge... 1728.91 0 MT118671 Human coronavirus OC43 strain 2018_8596, partial ge... 1728.91 0 LC654456 Human coronavirus OC43 Tokyo_SGH-71_2016 RNA, compl... 1728.91 0 LC654450 Human coronavirus OC43 Fukushima_O120_2017 RNA, com... 1728.91 0 LC315649 Human coronavirus OC43 Tokyo/SGH-65/2016 RNA, compl... 1728.91 0 KF923905 Human coronavirus OC43 isolate 229/2005, complete g... 1729.82 0 KF923891 Human coronavirus OC43 isolate 5240/2007, complete ... 1729.82 0 KF923889 Human coronavirus OC43 isolate 1926/2006, complete ... 1728.91 0 KF572676 Human coronavirus OC43 strain 5240_07 hemagglutinin... 1729.82 0 KF572657 Human coronavirus OC43 strain 1926_06 hemagglutinin... 1728.91 0 KF572650 Human coronavirus OC43 strain 1537A_09 hemagglutini... 1729.82 0 AY903460 Human coronavirus OC43 strain 19572 Belgium 2004, c... 1729.82 0 KF572700 Human coronavirus OC43 strain 8164_09 hemagglutinin... 1728.91 0 KF572656 Human coronavirus OC43 strain 1919A_10 hemagglutini... 1727.11 0 KF530081 Human coronavirus OC43 strain OC43/human/USA/991-5/... 1727.11 0 MW532110 Human coronavirus OC43 strain OC43/China/02/2009, c... 1725.31 0 MW052042 Human coronavirus OC43 strain 2019_0536, partial ge... 1724.41 0 MN306043 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1724.41 0 MK327281 Human coronavirus OC43 isolate MDS15, partial genome 1724.41 0 KY674918 Human coronavirus OC43 strain N07-1647B, complete g... 1725.31 0 KY674917 Human coronavirus OC43 strain N07-1609B, complete g... 1725.31 0 KY554973 Human coronavirus OC43 strain N07-1689B_116X, compl... 1725.31 0 KY554972 Human coronavirus OC43 strain N07-1541B_433X, compl... 1725.31 0 KF923924 Human coronavirus OC43 isolate 10290/2010, complete... 1725.31 0 KF923921 Human coronavirus OC43 isolate 69A/2007, complete g... 1725.31 0 KF923920 Human coronavirus OC43 isolate 5617/2007, complete ... 1725.31 0 KF923919 Human coronavirus OC43 isolate 5595/2007, complete ... 1725.31 0 KF923918 Human coronavirus OC43 isolate 10108/2010, complete... 1725.31 0 KF923917 Human coronavirus OC43 isolate 5566/2007, complete ... 1725.31 0 KF923916 Human coronavirus OC43 isolate 5519/2007, complete ... 1725.31 0 KF923915 Human coronavirus OC43 isolate 5517/2007, complete ... 1725.31 0 KF923914 Human coronavirus OC43 isolate 5508/2007, complete ... 1725.31 0 KF923913 Human coronavirus OC43 isolate 5485/2007, complete ... 1725.31 0 KF923912 Human coronavirus OC43 isolate 5484/2007, complete ... 1725.31 0 KF923911 Human coronavirus OC43 isolate 5479/2007, complete ... 1725.31 0 KF923910 Human coronavirus OC43 isolate 5445/2007, complete ... 1725.31 0 KF923909 Human coronavirus OC43 isolate 5442/2007, complete ... 1725.31 0 KF923908 Human coronavirus OC43 isolate 5414/2007, complete ... 1725.31 0 KF923907 Human coronavirus OC43 isolate 5370/2007, complete ... 1725.31 0 KF923896 Human coronavirus OC43 isolate 3074A/2012, complete... 1724.41 0 KF923892 Human coronavirus OC43 isolate 5345/2007, complete ... 1725.31 0 KF572707 Human coronavirus OC43 strain 10290_10 hemagglutini... 1725.31 0 KF572669 Human coronavirus OC43 strain 3194A_12 hemagglutini... 1724.41 0 KF572665 Human coronavirus OC43 strain 2941A_11 hemagglutini... 1724.41 0 KF572663 Human coronavirus OC43 strain 2171A_10 hemagglutini... 1725.31 0 KF572662 Human coronavirus OC43 strain 2151A_10 hemagglutini... 1725.31 0 KF572653 Human coronavirus OC43 strain 1702_06 hemagglutinin... 1724.41 0 KF572649 Human coronavirus OC43 strain 1489A_09 hemagglutini... 1725.31 0 KF572631 Human coronavirus OC43 strain 1034A_08 hemagglutini... 1725.31 0 KF572630 Human coronavirus OC43 strain 1029A_08 hemagglutini... 1725.31 0 KF572628 Human coronavirus OC43 strain 10108_10 hemagglutini... 1725.31 0 KF530099 Human coronavirus OC43 strain OC43/human/USA/971-5/... 1724.41 0 KF530069 Human coronavirus OC43 strain OC43/human/USA/982-4/... 1724.41 0 KF530063 Human coronavirus OC43 strain OC43/human/USA/9612-4... 1724.41 0 JN129835 Human coronavirus OC43 strain HK04-02, complete genome 1725.31 0 KF923922 Human coronavirus OC43 isolate 8164/2009, complete ... 1724.41 0 KF923886 Human coronavirus OC43 isolate 1908A/2010, complete... 1722.6 0 KF572655 Human coronavirus OC43 strain 1908A_10 hemagglutini... 1722.6 0 MK303624 Human coronavirus OC43 isolate MDS14, complete genome 1720.8 0 MK303623 Human coronavirus OC43 isolate MDS12, complete genome 1720.8 0 MG197722 Human coronavirus OC43 strain YC-207, complete genome 1720.8 0 MG197716 Human coronavirus OC43 strain WZ-303, complete genome 1720.8 0 MG197715 Human coronavirus OC43 strain GZYF-26, complete genome 1720.8 0 MG197713 Human coronavirus OC43 strain BJ-221, complete genome 1720.8 0 MG197710 Human coronavirus OC43 strain BJ-124, complete genome 1720.8 0 MF314143 Human coronavirus OC43 isolate HCoV-OC43/USA/ACRI_0... 1719.9 0 KY674920 Human coronavirus OC43 strain N09-595B, complete ge... 1720.8 0 KY554975 Human coronavirus OC43 strain N09-382B, complete ge... 1720.8 0 KY554974 Human coronavirus OC43 strain N08-33B_360X, complet... 1720.8 0 KX538979 Human coronavirus OC43 isolate MY-U1975/13, complet... 1720.8 0 KX538978 Human coronavirus OC43 isolate MY-U1758/13, complet... 1720.8 0 KX538972 Human coronavirus OC43 isolate MY-U774/12, complete... 1720.8 0 KX538970 Human coronavirus OC43 isolate MY-U710/12, complete... 1720.8 0 KX538966 Human coronavirus OC43 isolate MY-U236/12, complete... 1720.8 0 KX538964 Human coronavirus OC43 isolate MY-U002/12, complete... 1720.8 0 KX344031 Human coronavirus OC43 isolate LRTI_238, complete g... 1720.8 0 KU131570 Human coronavirus OC43 strain HCoV-OC43/UK/London/2... 1719.9 0 KF923906 Human coronavirus OC43 isolate 3194A/2012, complete... 1719.9 0 KF923904 Human coronavirus OC43 isolate 12694/2012, complete... 1720.8 0 KF923901 Human coronavirus OC43 isolate 5472/2007, complete ... 1720.8 0 KF923895 Human coronavirus OC43 isolate 10285/2010, complete... 1720.8 0 KF923894 Human coronavirus OC43 isolate 5352/2007, complete ... 1720.8 0 KF923893 Human coronavirus OC43 isolate 2151A/2010, complete... 1720.8 0 KF923890 Human coronavirus OC43 isolate 39A/2007, complete g... 1720.8 0 KF923888 Human coronavirus OC43 isolate 2145A/2010, complete... 1719.9 0 KF923887 Human coronavirus OC43 isolate 1997A/2010, complete... 1719.9 0 KF572703 Human coronavirus OC43 strain 8942_09 hemagglutinin... 1720.8 0 KF572696 Human coronavirus OC43 strain 5656_07 hemagglutinin... 1720.8 0 KF572695 Human coronavirus OC43 strain 5625_07 hemagglutinin... 1720.8 0 KF572684 Human coronavirus OC43 strain 5472_07 hemagglutinin... 1720.8 0 KF572673 Human coronavirus OC43 strain 39A_07 hemagglutinin-... 1720.8 0 KF572661 Human coronavirus OC43 strain 2145A_10 hemagglutini... 1719.9 0 KF572658 Human coronavirus OC43 strain 1997A_10 hemagglutini... 1719.9 0 KF572652 Human coronavirus OC43 strain 1593A_09 hemagglutini... 1720.8 0 KF572639 Human coronavirus OC43 strain 12651_12 hemagglutini... 1720.8 0 KF572633 Human coronavirus OC43 strain 10574_10 hemagglutini... 1720.8 0 KF572629 Human coronavirus OC43 strain 10285_10 hemagglutini... 1720.8 0 KF572627 Human coronavirus OC43 strain 079A_07 hemagglutinin... 1720.8 0 KF923923 Human coronavirus OC43 isolate 892A/2008, complete ... 1719.0 0 KF923898 Human coronavirus OC43 isolate 3184A/2012, complete... 1718.09 0 KF572702 Human coronavirus OC43 strain 892A_08 hemagglutinin... 1719.0 0 KF572668 Human coronavirus OC43 strain 3184A_12 hemagglutini... 1718.09 0 OL770288 Human coronavirus OC43 isolate HCoV-OC43/09-83/QLD/... 1716.29 0 OL770287 Human coronavirus OC43 isolate HCoV-OC43/03-16118/N... 1716.29 0 MW559057 Human coronavirus OC43 isolate Guangzhou 201301, co... 1715.39 0 MW532111 Human coronavirus OC43 strain OC43/China/01/2009, c... 1716.29 0 MK303622 Human coronavirus OC43 isolate MDS11, complete genome 1716.29 0 MK303621 Human coronavirus OC43 isolate MDS4, complete genome 1716.29 0 MK303620 Human coronavirus OC43 isolate MDS2, complete genome 1716.29 0 MK303619 Human coronavirus OC43 isolate MDS6, complete genome 1716.29 0 MG197717 Human coronavirus OC43 strain WZ-522, complete genome 1716.29 0 MG197712 Human coronavirus OC43 strain BJ-165, complete genome 1716.29 0 LC315647 Human coronavirus OC43 Tokyo/SGH-61/2014 RNA, compl... 1716.29 0 LC315646 Human coronavirus OC43 Tokyo/SGH-36/2014 RNA, compl... 1716.29 0 KX538977 Human coronavirus OC43 isolate MY-U1140/12, complet... 1716.29 0 KX538976 Human coronavirus OC43 isolate MY-U1057/12, complet... 1716.29 0 KX538973 Human coronavirus OC43 isolate MY-U868/12, complete... 1716.29 0 KX538969 Human coronavirus OC43 isolate MY-U523/12, complete... 1716.29 0 KX538968 Human coronavirus OC43 isolate MY-U464/12, complete... 1716.29 0 KX538965 Human coronavirus OC43 isolate MY-U208/12, complete... 1716.29 0 KP198611 Human coronavirus OC43 strain 1783A/10, complete ge... 1715.39 0 KJ958219 Human coronavirus OC43 strain LY342, complete genome 1716.29 0 KF923925 Human coronavirus OC43 isolate 10574/2010, complete... 1716.29 0 KF923903 Human coronavirus OC43 isolate 12691/2012, complete... 1716.29 0 KF923902 Human coronavirus OC43 isolate 12689/2012, complete... 1716.29 0 KF923897 Human coronavirus OC43 isolate 3269A/2012, complete... 1716.29 0 KF572705 Human coronavirus OC43 strain 9138_09 hemagglutinin... 1716.29 0 KF572654 Human coronavirus OC43 strain 1783A_10 hemagglutini... 1715.39 0 KF572645 Human coronavirus OC43 strain 12747_12 hemagglutini... 1716.29 0 KF572643 Human coronavirus OC43 strain 12700_12 hemagglutini... 1716.29 0 KF572641 Human coronavirus OC43 strain 12691_12 hemagglutini... 1716.29 0 KF572640 Human coronavirus OC43 strain 12689_12 hemagglutini... 1716.29 0 KP198610 Human coronavirus OC43 strain 2058A/10, complete ge... 1713.58 0 KF572667 Human coronavirus OC43 strain 3089A_12 hemagglutini... 1713.58 0 KF572659 Human coronavirus OC43 strain 2058A_10 hemagglutini... 1713.58 0 OK500303 Human coronavirus OC43 strain OC43/China/67/2021, c... 1711.78 0 OK500302 Human coronavirus OC43 strain OC43/China/58/2019, c... 1711.78 0 OK500300 Human coronavirus OC43 strain OC43/China/56/2019, c... 1711.78 0 OK391227 Human coronavirus OC43 strain OC43/China/43/2019, c... 1711.78 0 OK318947 Human coronavirus OC43 strain OC43/China/51/2019, c... 1711.78 0 OK318945 Human coronavirus OC43 strain OC43/China/40/2019, p... 1711.78 0 OK318918 Human coronavirus OC43 strain OC43/China/38/2019, c... 1711.78 0 OK318917 Human coronavirus OC43 strain OC43/China/47/2019, c... 1711.78 0 MW532112 Human coronavirus OC43 strain OC43/China/03/2010, c... 1711.78 0 MF374984 Human coronavirus OC43 isolate HCoV-OC43/USA/TCNP_0... 1711.78 0 LC654452 Human coronavirus OC43 Fukushima_H478_2018 RNA, com... 1711.78 0 LC315648 Human coronavirus OC43 Tokyo/SGH-06/2015 RNA, compl... 1711.78 0 KX538975 Human coronavirus OC43 isolate MY-U1024/12, complet... 1711.78 0 KX538967 Human coronavirus OC43 isolate MY-U413/12, complete... 1711.78 0 KJ958218 Human coronavirus OC43 strain LY341, complete genome 1711.78 0 KF572638 Human coronavirus OC43 strain 12642_12 hemagglutini... 1711.78 0 KF572632 Human coronavirus OC43 strain 10352_10 hemagglutini... 1711.78 0 JN874562 Rabbit coronavirus HKU14 strain HKU14-10, complete ... 1716.29 0 OK500301 Human coronavirus OC43 strain OC43/China/57/2019, c... 1709.98 0 OK500298 Human coronavirus OC43 strain OC43/China/54/2019, c... 1707.27 0 OK500297 Human coronavirus OC43 strain OC43/China/53/2019, c... 1707.27 0 OK391238 Human coronavirus OC43 strain OC43/China/41/2019, p... 1707.27 0 OK318946 Human coronavirus OC43 strain OC43/China/45/2019, c... 1707.27 0 LC720429 Human coronavirus OC43 HCoVOC43_Fukushima_O989_2019... 1707.27 0 LC687400 Human coronavirus OC43 Fukushima_O502_2019 RNA, com... 1707.27 0 LC654451 Human coronavirus OC43 Fukushima_H509_2019 RNA, com... 1707.27 0 KX538974 Human coronavirus OC43 isolate MY-U945/12, complete... 1707.27 0 KX538971 Human coronavirus OC43 isolate MY-U732/12, complete... 1707.27 0 KF572644 Human coronavirus OC43 strain 12741_12 hemagglutini... 1707.27 0 OK500299 Human coronavirus OC43 strain OC43/China/55/2019, c... 1705.47 0 OK318944 Human coronavirus OC43 strain OC43/China/34/2019, c... 1704.57 0 OK318943 Human coronavirus OC43 strain OC43/China/27/2019, c... 1704.57 0 OK318942 Human coronavirus OC43 strain OC43/China/24/2019, c... 1704.57 0 OK318941 Human coronavirus OC43 strain OC43/China/22/2019, c... 1704.57 0 OK318940 Human coronavirus OC43 strain OC43/China/21/2019, c... 1704.57 0 MH685718 Betacoronavirus 1 isolate E0-034 ORF1ab gene, compl... 1706.37 0 MG197720 Human coronavirus OC43 strain YC-68, complete genome 1704.57 0 MG197714 Human coronavirus OC43 strain CC-23, complete genome 1704.57 0 MG197711 Human coronavirus OC43 strain BJ-164, complete genome 1704.57 0 LC654453 Human coronavirus OC43 Fukushima_H189_2018 RNA, com... 1704.57 0 OK391226 Human coronavirus OC43 strain OC43/China/36/2019, c... 1702.76 0 LC687399 Human coronavirus OC43 Fukushima_H773_2019 RNA, com... 1702.76 0 LC654454 Human coronavirus OC43 Fukushima_H148_2018 RNA, com... 1702.76 0 KY967356 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1702.76 0 MW532108 Human coronavirus OC43 strain OC43/China/07/2017, c... 1700.06 0 MK303625 Human coronavirus OC43 isolate MDS16, complete genome 1700.06 0 MG197721 Human coronavirus OC43 strain YC-72, complete genome 1700.06 0 MG197719 Human coronavirus OC43 strain YC-67, complete genome 1700.06 0 MG197718 Human coronavirus OC43 strain YC-55, complete genome 1700.06 0 MG197709 Human coronavirus OC43 strain BJ-112, complete genome 1700.06 0 MH828490 Human coronavirus OC43 strain vzcorona-b1 replicase... 1698.26 0 OK391225 Human coronavirus OC43 strain OC43/China/32/2019, c... 1695.55 0 OK318939 Human coronavirus OC43 strain OC43/China/19/2019, c... 1695.55 0 MT118668 Human coronavirus OC43 strain 2018_0004, partial ge... 1695.55 0 MN310476 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA... 1691.04 0 OL770289 Human coronavirus OC43 isolate HCoV-OC43/15-318/WA/... 1687.44 0 MW202339 Human coronavirus OC43 isolate OC43_S219, complete ... 1686.53 0 LC687398 Human coronavirus OC43 Fukushima_H763_2019 RNA, com... 1674.81 0 MN514966 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU... 1673.91 0 MW532109 Human coronavirus OC43 strain OC43/China/12/2018, c... 1666.7 0 OK391229 Human coronavirus OC43 strain OC43/China/44/2019 he... 1440.37 0 ALIGNMENTS >U00735 Bovine coronavirus strain Mebus, complete genome Length = 31032 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >S50936 H=hemagglutinin protein...Iorf2 protein [bovine coronavirus, Genomic RNA, 3 genes, 1290 nt] Length = 1290 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >OP037432 Bovine coronavirus isolate VDC/2019/03/E, partial genome Length = 31008 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22464 CGCTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22764 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAC 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACTCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23424 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >OP037431 Bovine coronavirus isolate VDC/2019/02/E, partial genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037428 Bovine coronavirus isolate VDC/2018/13/E, partial genome Length = 31006 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTACTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >OP037426 Bovine coronavirus isolate VDC/2018/11/E, partial genome Length = 31014 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037425 Bovine coronavirus isolate VDC/2018/10/E, partial genome Length = 31012 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22348 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22407 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22408 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22467 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22468 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22527 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22528 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22587 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22588 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22647 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22648 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22707 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22708 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22767 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22768 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22827 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22828 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22887 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22888 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22947 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22948 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23007 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23008 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23067 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23068 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23127 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23128 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23187 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23188 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23247 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23248 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23307 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23308 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23367 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23368 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23427 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23428 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23487 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23488 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23547 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23548 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23607 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23608 CTGCATGATGCTTAG 23622 >OP037424 Bovine coronavirus isolate VDC/2018/09/E, partial genome Length = 31008 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23424 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >OP037423 Bovine coronavirus isolate VDC/2018/08/E, partial genome Length = 31014 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037422 Bovine coronavirus isolate VDC/2018/07/E, partial genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTACTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037417 Bovine coronavirus isolate VDC/2018/02/R, partial genome Length = 31008 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAC 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037415 Bovine coronavirus isolate VDC/2017/02/E&N, partial genome Length = 31009 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23005 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACTCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23365 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23425 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23485 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23545 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >OP037401 Bovine coronavirus isolate SDSU/2020/05/R, partial genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037387 Bovine coronavirus isolate MARC/2018/02/R, partial genome Length = 31000 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22338 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22397 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22398 AACCCTCCTACCAATTTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22457 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22458 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22517 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22518 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22577 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22578 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22637 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22638 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22697 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22698 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22757 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22758 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22817 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22818 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22877 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22878 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22937 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22938 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22997 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22998 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23057 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23058 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23117 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23118 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23177 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23178 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23237 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23238 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23297 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23298 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23357 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23358 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23417 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23418 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23477 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23478 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23537 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23538 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23597 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23598 CTGCATGATGCTTAG 23612 >OP037386 Bovine coronavirus isolate MARC/2018/01/R, partial genome Length = 31014 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATTTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037385 Bovine coronavirus isolate MARC/2017/06/R, partial genome Length = 31017 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22765 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23005 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATCAATCACGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23365 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23425 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23485 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23545 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >OP037383 Bovine coronavirus isolate MARC/2017/04/E, partial genome Length = 31004 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037382 Bovine coronavirus isolate MARC/2017/03/E, partial genome Length = 31008 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23005 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23365 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23425 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23485 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23545 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >OP037381 Bovine coronavirus isolate MARC/2017/02/E, partial genome Length = 31009 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22526 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22766 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22826 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22886 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22945 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22946 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23005 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23006 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23065 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23066 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23125 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23126 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23185 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23186 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23245 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23246 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23305 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23306 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23365 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23366 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23425 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23426 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23485 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23486 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23545 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23546 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23605 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23606 CTGCATGATGCTTAG 23620 >OP037379 Bovine coronavirus isolate MARC/2016/07/R, partial genome Length = 31006 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >OP037378 Bovine coronavirus isolate MARC/2016/06/R, partial genome Length = 31003 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22339 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22398 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22399 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22458 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22459 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22518 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22519 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22578 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22579 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22638 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22639 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22698 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22699 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22758 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22759 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22818 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22819 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22878 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22879 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22938 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22939 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22998 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22999 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23058 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23059 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23118 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23119 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23178 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23179 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23238 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23239 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23298 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23299 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23358 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23359 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23418 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23419 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23478 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23479 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23538 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23539 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23598 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23599 CTGCATGATGCTTAG 23613 >OP037376 Bovine coronavirus isolate MARC/2016/04/R, partial genome Length = 31006 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >OP037375 Bovine coronavirus isolate MARC/2016/03/R, partial genome Length = 31009 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAGCACTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23005 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23365 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23425 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23485 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23545 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >OP037374 Bovine coronavirus isolate MARC/2016/02/R, partial genome Length = 31005 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037373 Bovine coronavirus isolate MARC/2016/01/R, partial genome Length = 31009 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAGCACTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23005 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23365 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23425 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23485 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23545 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >OP037370 Bovine coronavirus isolate MARC/2014/04/R, partial genome Length = 30996 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22332 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22391 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22392 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22451 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22452 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22511 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22512 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22571 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22572 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22631 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22632 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22691 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22692 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22751 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22752 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22811 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22812 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22871 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22872 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23472 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23532 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >OP037369 Bovine coronavirus isolate MARC/2014/03/R, partial genome Length = 30996 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22332 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22391 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22392 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22451 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22452 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22511 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22512 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22571 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22572 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22631 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22632 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22691 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22692 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22751 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22752 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22811 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22812 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22871 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22872 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23472 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23532 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >OP037368 Bovine coronavirus isolate MARC/2014/02/R, partial genome Length = 30990 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22326 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22385 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22386 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22445 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22446 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22505 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22506 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22565 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22566 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22625 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22626 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22685 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22686 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22745 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22746 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22805 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22806 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22865 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22866 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23286 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23406 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23466 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23526 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >OP037367 Bovine coronavirus isolate MARC/2014/01/R, partial genome Length = 30996 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22332 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22391 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22392 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22451 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22452 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22511 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22512 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22571 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22572 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22631 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22632 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22691 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22692 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22751 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22752 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22811 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22812 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22871 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22872 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23472 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23532 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >OP037366 Bovine coronavirus isolate MARC/2013/02/R, partial genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAA 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCCTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCCGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037365 Bovine coronavirus isolate MARC/2013/01/R, partial genome Length = 31007 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAA 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCCTATATGGACCTT 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCCGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >ON146444 Bovine coronavirus strain MARC/BRCV_2014, complete genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCATGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >ON142317 Bovine coronavirus isolate BCoV4/2021/CHN, complete genome Length = 30994 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22320 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22379 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22380 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22439 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22440 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22499 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22500 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22559 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22560 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22619 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22620 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22679 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22680 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22739 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22740 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22799 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22800 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22859 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22860 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22919 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22920 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22979 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22980 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23039 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23040 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23099 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23100 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23159 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23160 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23219 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23220 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23279 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23280 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23339 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23340 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23399 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23400 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23459 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23460 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23519 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23520 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23579 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23580 CTGCATGATGCTTAG 23594 >ON093194 Bovine coronavirus strain BCoV2/2021/CHN, complete genome Length = 30993 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22320 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22379 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22380 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22439 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22440 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22499 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22500 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22559 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22560 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22619 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22620 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22679 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22680 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22739 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22740 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22799 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22800 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22859 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22860 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22919 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22920 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22979 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22980 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23039 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23040 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23099 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23100 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23159 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23160 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23219 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23220 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23279 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23280 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23339 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23340 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23399 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23400 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23459 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23460 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23519 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23520 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23579 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23580 CTGCATGATGCTTAG 23594 >NC_003045 Bovine coronavirus isolate BCoV-ENT, complete genome Length = 31028 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MW711307 Bovine coronavirus strain SWUN/NX-YC10/2019 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH043954 Bovine coronavirus isolate 4-17-08, complete genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MG757141 Bovine coronavirus isolate ICSA-pool-EN, complete genome Length = 31019 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AACCCCGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAACGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23415 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23475 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23535 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >MG757139 Bovine coronavirus isolate ICSA16-EN, complete genome Length = 31028 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22338 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22397 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22398 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22457 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22458 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22517 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22518 AACCCCGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22577 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22578 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22637 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22638 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGAT 22697 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22698 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22757 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22758 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22817 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22818 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22877 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22878 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 22937 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22938 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22997 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22998 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23057 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23058 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23117 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23118 GCCATTTCAAACGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23177 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23178 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23237 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23238 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23297 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23298 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23357 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23358 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23417 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23418 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23477 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23478 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23537 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23538 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23597 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23598 CTGCATGATGCTTAG 23612 >M76372 Bovine coronavirus strain L9 hemagglutinin/esterase glycoprotein (HE) gene Length = 1304 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTCTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >LC642814 Bovine coronavirus BoCoV GF2020 RNA, complete genome Length = 31015 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCTGCATACATAGCTCGTGAAGCTAAT 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22949 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23489 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23549 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >LC494192 Bovine coronavirus TCG-33 RNA, complete genome Length = 30942 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494191 Bovine coronavirus TCG-32 RNA, complete genome Length = 30942 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494190 Bovine coronavirus TCG-31 RNA, complete genome Length = 30898 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCATGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494189 Bovine coronavirus TCG-30 RNA, complete genome Length = 30937 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494187 Bovine coronavirus TCG-28 RNA, complete genome Length = 30940 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22323 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22382 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22383 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22442 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22443 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22502 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22503 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22562 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22563 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22622 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22623 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22682 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22683 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22742 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22743 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22802 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22803 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22862 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22863 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22922 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22923 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22982 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22983 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23042 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23043 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23102 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23103 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23162 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23163 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23222 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23223 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23282 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23283 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23342 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23343 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23402 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23403 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23462 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23463 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23522 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23523 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23582 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23583 CTGCATGATGCTTAG 23597 >LC494186 Bovine coronavirus TCG-27 RNA, complete genome Length = 30942 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494184 Bovine coronavirus TCG-25 RNA, complete genome Length = 30940 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22323 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22382 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22383 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22442 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22443 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22502 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22503 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22562 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22563 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22622 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22623 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22682 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22683 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22742 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22743 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22802 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22803 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22862 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22863 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22922 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22923 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22982 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22983 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23042 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23043 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23102 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23103 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23162 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23163 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23222 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23223 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23282 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23283 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23342 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23343 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23402 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23403 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23462 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23463 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23522 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23523 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23582 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23583 CTGCATGATGCTTAG 23597 >LC494183 Bovine coronavirus TCG-24 RNA, complete genome Length = 30936 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22320 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22379 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22380 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22439 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22440 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22499 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22500 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22559 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22560 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22619 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22620 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22679 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22680 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22739 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22740 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22799 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22800 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22859 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22860 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22919 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22920 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22979 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22980 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23039 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23040 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23099 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23100 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23159 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23160 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCTGTCTGAT 23219 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23220 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23279 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23280 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23339 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23340 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23399 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23400 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23459 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23460 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23519 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23520 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23579 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23580 CTGCATGATGCTTAG 23594 >LC494182 Bovine coronavirus TCG-23 RNA, complete genome Length = 30940 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22496 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22796 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22915 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22916 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22975 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22976 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23035 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23036 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23095 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23096 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23155 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23156 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23215 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23216 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23275 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23276 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23335 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23336 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23395 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23396 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23455 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23456 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23515 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23516 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23575 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23576 CTGCATGATGCTTAG 23590 >LC494181 Bovine coronavirus TCG-22 RNA, complete genome Length = 30923 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22308 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22367 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22368 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22427 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22428 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22487 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22488 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22547 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22548 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22607 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22608 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22667 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22668 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22727 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22728 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22787 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22788 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22847 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22848 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22907 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22908 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22967 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22968 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23027 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23028 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23087 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23088 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23147 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23148 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23207 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23208 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23267 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23268 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23327 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23328 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23387 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23388 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23447 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23448 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23507 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23508 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23567 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23568 CTGCATGATGCTTAG 23582 >LC494180 Bovine coronavirus TCG-21 RNA, complete genome Length = 30939 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22496 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22796 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22915 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22916 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22975 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22976 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23035 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23036 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23095 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23096 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23155 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23156 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23215 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23216 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23275 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23276 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23335 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23336 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23395 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23396 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23455 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23456 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23515 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23516 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23575 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23576 CTGCATGATGCTTAG 23590 >LC494178 Bovine coronavirus TCG-19 RNA, complete genome Length = 30949 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22323 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22382 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22383 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22442 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22443 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22502 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22503 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22562 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22563 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22622 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22623 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22682 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22683 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22742 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22743 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22802 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22803 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22862 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22863 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22922 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22923 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22982 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22983 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23042 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23043 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23102 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23103 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23162 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23163 AAGGATTTTACGCCTGTACAGGTCGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23222 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23223 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23282 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23283 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23342 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23343 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23402 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23403 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23462 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23463 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23522 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23523 GCTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23582 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23583 CTGCATGATGCTTAG 23597 >LC494176 Bovine coronavirus TCG-17 RNA, complete genome Length = 30945 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCGGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494175 Bovine coronavirus TCG-18 RNA, complete genome Length = 30941 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22321 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22380 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22381 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22440 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22441 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22500 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22501 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22560 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22561 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22620 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22621 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22680 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22681 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22740 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22741 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22800 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22801 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCTGCATACATAGCTCGTGAAGCTAAT 22860 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22861 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22920 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22921 ATCGTACCACTTTGTATTTTCAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22980 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22981 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23040 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23041 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23100 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23101 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23160 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23161 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCGGGCTGTCTGAT 23220 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23221 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23280 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23281 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23340 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23341 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23400 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23401 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23460 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23461 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23520 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23521 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23580 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23581 CTGCATGATGCTTAG 23595 >LC494172 Bovine coronavirus TCG-6 RNA, complete genome Length = 30952 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTTTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494171 Bovine coronavirus TCG-16 RNA, complete genome Length = 30936 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22496 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGATTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22796 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22915 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22916 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22975 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22976 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23035 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23036 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23095 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23096 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23155 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23156 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCCGTCTGAT 23215 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23216 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23275 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23276 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23335 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23336 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23395 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23396 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23455 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23456 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23515 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23516 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23575 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23576 CTGCATGATGCTTAG 23590 >LC494170 Bovine coronavirus TCG-15 RNA, complete genome Length = 30938 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22313 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22372 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22373 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22432 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22433 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22492 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22493 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22552 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22553 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22612 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22613 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22672 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22673 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGATTTATAAGAATATGGCTGTGTAT 22732 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22733 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22792 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22793 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22852 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22853 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22913 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23093 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCCGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23453 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23513 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >LC494169 Bovine coronavirus TCG-14 RNA, complete genome Length = 30945 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGCACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494168 Bovine coronavirus TCG-13 RNA, complete genome Length = 30950 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494167 Bovine coronavirus TCG-12 RNA, complete genome Length = 30942 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22327 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22386 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22387 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22446 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22447 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22506 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22507 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22566 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22567 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22626 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22627 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22686 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22687 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22746 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22747 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22806 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22807 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22866 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22867 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22926 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22927 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22986 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22987 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23046 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23047 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23106 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23107 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23166 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23167 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23226 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23227 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23286 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23287 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23346 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23347 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23406 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23407 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23466 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23467 GATGCACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23526 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23527 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23586 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23587 CTGCATGATGCTTAG 23601 >LC494166 Bovine coronavirus TCG-11 RNA, complete genome Length = 30934 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22322 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22381 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22382 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22441 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22442 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22501 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22502 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22561 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22562 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22621 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22622 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22681 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22682 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22741 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22742 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22801 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22802 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22861 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22862 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22921 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22922 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22981 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22982 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23041 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23042 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23101 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23102 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23161 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23162 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTGTCTGAT 23221 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23222 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23281 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23282 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23341 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23342 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23401 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23402 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23461 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23462 GATGCACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23521 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23522 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23581 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23582 CTGCATGATGCTTAG 23596 >LC494165 Bovine coronavirus TCG-10 RNA, complete genome Length = 30926 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22312 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22371 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22372 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22431 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22432 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22491 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22492 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22551 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22552 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22611 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22612 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22671 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22672 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22731 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22732 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22791 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22792 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22851 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22852 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22911 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22912 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22971 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22972 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23031 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23032 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23091 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23092 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23151 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23152 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTGTCTGAT 23211 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23212 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23271 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23272 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23331 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23332 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23391 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23392 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23451 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23452 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23511 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23512 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23571 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23572 CTGCATGATGCTTAG 23586 >LC494164 Bovine coronavirus TCG-1 RNA, complete genome Length = 30951 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494161 Bovine coronavirus TCG-5 RNA, complete genome Length = 30940 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22318 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22377 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22378 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22437 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22438 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22497 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22498 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22557 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22558 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22617 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22618 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22677 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22678 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22737 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22738 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22797 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22798 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22857 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22858 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22917 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22918 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22977 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22978 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23037 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23038 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23097 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23098 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23157 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23158 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTTTCTGAT 23217 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23218 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23277 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23278 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23337 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23338 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23397 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23398 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23457 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23458 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23517 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23518 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23577 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23578 CTGCATGATGCTTAG 23592 >LC494159 Bovine coronavirus SHG-6 RNA, complete genome Length = 30947 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22321 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22380 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22381 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22440 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22441 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22500 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22501 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22560 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22561 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22620 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22621 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22680 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22681 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22740 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22741 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22800 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22801 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22860 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22861 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22920 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22921 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22980 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22981 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23040 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23041 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23100 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23101 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23160 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23161 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23220 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23221 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23280 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23281 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23340 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23341 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23400 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23401 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23460 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23461 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23520 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23521 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23580 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23581 CTGCATGATGCTTAG 23595 >LC494158 Bovine coronavirus SHG-5 RNA, complete genome Length = 30950 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22324 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22383 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22384 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22443 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22444 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22503 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22504 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22563 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22564 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22623 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22624 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22683 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22684 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22743 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22744 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22803 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22804 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22863 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22864 TTAGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22923 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22924 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22983 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22984 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23043 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23044 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23103 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23104 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAGTAAGCGT 23163 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23164 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACACTGCCAGGCTGTCTGAT 23223 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23224 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23283 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23284 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23343 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23344 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23403 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23404 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23463 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23464 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23523 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23524 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23583 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23584 CTGCATGATGCTTAG 23598 >LC494157 Bovine coronavirus SHG-4 RNA, complete genome Length = 30953 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATATCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTCGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494155 Bovine coronavirus SHG-2 RNA, complete genome Length = 30938 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22321 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAC 22380 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22381 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22440 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22441 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22500 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22501 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22560 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22561 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22620 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22621 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22680 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22681 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22740 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22741 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22800 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22801 CTTTGTAAATTTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTTAT 22860 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22861 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22920 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22921 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22980 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22981 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23040 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23041 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23100 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23101 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23160 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23161 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23220 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23221 AACATGACGGCAGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23280 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23281 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23340 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23341 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23400 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23401 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23460 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23461 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23520 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23521 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23580 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23581 CTGCATGATGCTTAG 23595 >LC494154 Bovine coronavirus SHG-1 RNA, complete genome Length = 30936 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22319 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAC 22378 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22379 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22438 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22439 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22498 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22499 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22558 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22559 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22618 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22619 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22678 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22679 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22738 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22739 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22798 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22799 CTTTGTAAATTTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTTAT 22858 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22859 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22918 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22919 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22978 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22979 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23038 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23039 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23098 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23099 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23158 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23159 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23218 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23219 AACATGACGGCAGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23278 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23279 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23338 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23339 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23398 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23399 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23458 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23459 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23518 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23519 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23578 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23579 CTGCATGATGCTTAG 23593 >LC494153 Bovine coronavirus IWT-27 RNA, complete genome Length = 30944 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22324 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22383 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22384 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22443 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22444 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22503 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22504 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22563 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22564 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22623 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22624 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22683 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22684 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22743 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22744 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22803 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22804 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22863 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22864 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22923 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22924 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22983 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22984 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23043 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23044 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23103 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23104 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23163 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23164 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23223 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23224 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23283 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23284 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23343 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23344 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23403 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23404 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23463 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23464 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23523 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23524 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23583 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23584 CTGCATGATGCTTAG 23598 >LC494152 Bovine coronavirus IWT-26 RNA, complete genome Length = 30950 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22324 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22383 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22384 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22443 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22444 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22503 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22504 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22563 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22564 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22623 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22624 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 22683 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22684 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22743 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22744 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22803 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22804 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22863 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22864 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22923 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22924 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22983 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22984 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23043 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23044 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23103 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23104 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23163 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23164 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23223 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23224 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23283 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23284 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23343 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23344 TTGTTATATGACTCACCTTGTTTTTCGCAGCAGGGTGTTTTTAGGTATGATAATGTTAGC 23403 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23404 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23463 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23464 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23523 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23524 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23583 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23584 CTGCATGATGCTTAG 23598 >LC494151 Bovine coronavirus IWT-25 RNA, complete genome Length = 30951 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAGGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494150 Bovine coronavirus IWT-24 RNA, complete genome Length = 30954 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAGGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494149 Bovine coronavirus IWT-23 RNA, complete genome Length = 30944 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22318 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22377 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22378 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22437 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22438 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22497 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22498 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22557 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22558 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22617 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22618 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 22677 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22678 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22737 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22738 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22797 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22798 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22857 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22858 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22917 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22918 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22977 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22978 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23037 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23038 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23097 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23098 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23157 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23158 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23217 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23218 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23277 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23278 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23337 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23338 TTGTTATATGACTCACCTTGTTTTTCGCAGCAGGGTGTTTTTAGGTATGATAATGTTAGC 23397 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23398 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23457 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23458 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23517 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23518 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23577 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23578 CTGCATGATGCTTAG 23592 >LC494148 Bovine coronavirus IWT-22 RNA, complete genome Length = 30946 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22320 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22379 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22380 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22439 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22440 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22499 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22500 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22559 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22560 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22619 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22620 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 22679 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22680 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22739 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22740 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22799 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22800 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22859 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22860 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22919 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22920 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22979 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22980 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23039 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23040 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23099 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23100 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23159 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23160 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23219 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23220 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23279 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23280 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23339 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23340 TTGTTATATGACTCACCTTGTTTTTCGCAGCAGGGTGTTTTTAGGTATGATAATGTTAGC 23399 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23400 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23459 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23460 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23519 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23520 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23579 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23580 CTGCATGATGCTTAG 23594 >LC494147 Bovine coronavirus IWT-17 RNA, complete genome Length = 30944 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22321 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22380 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22381 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22440 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22441 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22500 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22501 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22560 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22561 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22620 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22621 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 22680 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22681 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22740 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22741 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22800 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22801 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22860 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22861 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22920 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22921 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22980 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22981 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23040 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23041 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23100 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23101 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23160 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23161 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23220 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23221 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23280 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23281 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23340 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23341 TTGTTATATGACTCACCTTGTTTTTCGCAGCAGGGTGTTTTTAGGTATGATAATGTTAGC 23400 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23401 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23460 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23461 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23520 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23521 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23580 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23581 CTGCATGATGCTTAG 23595 >LC494145 Bovine coronavirus IWT-21 RNA, complete genome Length = 30954 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTCGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494143 Bovine coronavirus IWT-19 RNA, complete genome Length = 30954 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCGACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCATGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGCACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494142 Bovine coronavirus IWT-18 RNA, complete genome Length = 30954 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCGACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGCACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494141 Bovine coronavirus IWT-15 RNA, complete genome Length = 30950 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22324 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22383 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22384 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22443 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22444 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22503 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22504 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22563 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22564 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22623 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22624 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22683 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22684 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22743 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22744 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22803 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22804 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22863 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22864 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22923 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22924 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22983 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22984 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23043 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23044 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23103 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23104 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23163 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23164 AAGGATTTTACGCCTGTACAGGTCGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23223 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23224 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23283 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23284 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23343 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23344 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23403 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23404 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23463 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23464 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23523 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23524 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23583 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23584 CTGCATGATGCTTAG 23598 >LC494137 Bovine coronavirus IWT-11 RNA, complete genome Length = 30951 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAACCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTAAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494136 Bovine coronavirus IWT-8 RNA, complete genome Length = 30941 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22321 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAC 22380 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22381 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22440 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22441 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22500 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22501 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22560 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22561 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22620 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22621 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22680 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22681 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22740 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22741 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22800 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22801 CTTTGTAAATTTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTTAT 22860 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22861 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22920 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22921 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22980 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22981 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23040 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23041 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23100 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23101 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23160 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23161 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23220 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23221 AACATGACGGCAGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23280 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23281 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23340 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23341 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23400 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23401 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23460 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23461 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23520 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23521 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23580 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23581 CTGCATGATGCTTAG 23595 >LC494135 Bovine coronavirus IWT-7 RNA, complete genome Length = 30945 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATTTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTTAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494134 Bovine coronavirus IWT-6 RNA, complete genome Length = 30951 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTAGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCTAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494129 Bovine coronavirus IWT-1 RNA, complete genome Length = 30934 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22321 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22380 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22381 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22440 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22441 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22500 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22501 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22560 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22561 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22620 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22621 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22680 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22681 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22740 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22741 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22800 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22801 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22860 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22861 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22920 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22921 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22980 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22981 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23040 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23041 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23100 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23101 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23160 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23161 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23220 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23221 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23280 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23281 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23340 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23341 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23400 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23401 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23460 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23461 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23520 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23521 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23580 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23581 CTGCATGATGCTTAG 23595 >LC494128 Bovine coronavirus IWT-10 RNA, complete genome Length = 30954 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTAGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAGTAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACACTGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494127 Bovine coronavirus IWT-9 RNA, complete genome Length = 30951 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATATCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTCGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >L07747 Human enteric coronavirus 4408 hemagglutinin-esterase (HE) gene sequence Length = 1297 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAA 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGCAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGATTCACCCTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTTTGGCCTCTCTACCCCTATGGCAGGTGTCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >KU886219 Bovine coronavirus strain BCV-AKS-01, complete genome Length = 30975 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22326 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22385 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22386 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22445 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22446 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22505 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22506 AATCCTGCCTTGTGTAGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22565 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22566 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22625 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22626 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22685 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22686 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22745 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22746 CGCAGTCTTACTTTTGTTACTGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22805 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22806 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 22865 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22866 GTGGGTGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23286 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23406 AGTGTCTGGCCTCTCTACTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23466 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23526 GTTGCGGTCATAATTATTCTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >FJ938065 Bovine respiratory coronavirus AH187, complete genome Length = 30969 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22310 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22369 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22370 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22429 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22430 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22489 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22490 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCAGCTAAAGCTGGCAACTCCATTTTTAGG 22549 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22550 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22609 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22610 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22669 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22670 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22729 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22730 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22789 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22790 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22849 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22850 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22909 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22910 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22969 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22970 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 23029 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23030 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23089 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23090 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23149 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23150 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23209 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23210 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23269 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23270 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23329 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23330 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23389 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23390 AGTGTCTGGCCTCTCTACTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23449 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23450 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23509 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23510 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23569 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23570 CTGCATGATGCTTAG 23584 >FJ938064 Bovine coronavirus E-AH187-TC, complete genome Length = 30995 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCAGCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >FJ938063 Bovine coronavirus E-DB2-TC, complete genome Length = 31024 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTCCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACTAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >FJ425190 Sambar deer coronavirus US/OH-WD388-TC/1994 calf-passaged, complete genome Length = 30987 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22322 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTATCCTAGGTTTTGAC 22381 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22382 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22441 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22442 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22501 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22502 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22561 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22562 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22621 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22622 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22681 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22682 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22741 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22742 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22801 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22802 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22861 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22862 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22921 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22922 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22981 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22982 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23041 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23042 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23101 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23102 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23161 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23162 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23221 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23222 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23281 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23282 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23341 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23342 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23401 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23402 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23461 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23462 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23521 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23522 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23581 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23582 CTGCATGATGCTTAG 23596 >FJ425189 Sambar deer coronavirus US/OH-WD388/1994, complete genome Length = 30997 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22322 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTATCCTAGGTTTTGAC 22381 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22382 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22441 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22442 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22501 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22502 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22561 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22562 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22621 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22622 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22681 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22682 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22741 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22742 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22801 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22802 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22861 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22862 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22921 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22922 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22981 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22982 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23041 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23042 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23101 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23102 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23161 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23162 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23221 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23222 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23281 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23282 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23341 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23342 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23401 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23402 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23461 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23462 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23521 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23522 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23581 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23582 CTGCATGATGCTTAG 23596 >FJ425188 Sambar deer coronavirus US/OH-WD388-TC/1994, complete genome Length = 30995 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTATCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >FJ425187 White-tailed deer coronavirus US/OH-WD470/1994, complete genome Length = 31020 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22338 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22397 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22398 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22457 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22458 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22517 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22518 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22577 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22578 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22637 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22638 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22697 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22698 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22757 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22758 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22817 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22818 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22877 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22878 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22937 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22938 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22997 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22998 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23057 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23058 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23117 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23118 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23177 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23178 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23237 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23238 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23297 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23298 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23357 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23358 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23417 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23418 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23477 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23478 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23537 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23538 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23597 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23598 CTGCATGATGCTTAG 23612 >FJ425186 Waterbuck coronavirus US/OH-WD358/1994, complete genome Length = 30962 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22306 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTATCCTAGGTTTTGAC 22365 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22366 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22425 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22426 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22485 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22486 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22545 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22546 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22605 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22606 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22665 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22666 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22725 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22726 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22785 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22786 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22845 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22846 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22905 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22906 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22965 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22966 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23025 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23026 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23085 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23086 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23145 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23146 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23205 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23206 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23265 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23266 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23325 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23326 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23385 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23386 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23445 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23446 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23505 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23506 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23565 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23566 CTGCATGATGCTTAG 23580 >FJ425185 Waterbuck coronavirus US/OH-WD358-GnC/1994, complete genome Length = 30940 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22309 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTATCCTAGGTTTTGAC 22368 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22369 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22428 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22429 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22488 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22489 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22548 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22549 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22608 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22609 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22668 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22669 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22728 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22729 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22788 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22789 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22848 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22849 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22908 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22909 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22968 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22969 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23028 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23029 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23088 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23089 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23148 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23149 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23208 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23209 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23268 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23269 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23328 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23329 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23388 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23389 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23448 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23449 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23508 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23509 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23568 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23569 CTGCATGATGCTTAG 23583 >FJ425184 Waterbuck coronavirus US/OH-WD358-TC/1994, complete genome Length = 30995 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTATCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >FJ415324 Human enteric coronavirus 4408, complete genome Length = 31029 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAA 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGCAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGATTCACCCTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTTTGGCCTCTCTACCCCTATGGCAGGTGTCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >EF424624 Calf-giraffe coronavirus US/OH3/2006, complete genome Length = 30979 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424623 Giraffe coronavirus US/OH3/2003, complete genome Length = 31002 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424622 Giraffe coronavirus US/OH3-TC/2006, complete genome Length = 30979 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424621 Sable antelope coronavirus US/OH1/2003, complete genome Length = 30995 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22337 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22396 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22397 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22456 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22457 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22516 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22517 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22576 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22577 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22636 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22637 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22696 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22697 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22756 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22757 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22816 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22817 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22876 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22877 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22936 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22937 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22996 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22997 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23056 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23057 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23116 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23117 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23176 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23177 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23236 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23237 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23296 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23297 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23356 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23357 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23416 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23417 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23476 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23477 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23536 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23537 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23596 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23597 CTGCATGATGCTTAG 23611 >EF424620 Bovine coronavirus R-AH187, complete genome Length = 30964 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCAGCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424619 Bovine coronavirus E-AH187, complete genome Length = 30995 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1138/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||||||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCAKCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACYGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424618 Bovine coronavirus R-AH65-TC, complete genome Length = 30995 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAGTTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424617 Bovine coronavirus R-AH65, complete genome Length = 31016 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAGTTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >DQ811784 Bovine coronavirus DB2, complete genome Length = 31007 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22337 ATGTTTTTGCTTCCTAGATTTGTCCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22396 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22397 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22456 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22457 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22516 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22517 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22576 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22577 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22636 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22637 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22696 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22697 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22756 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22757 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22816 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22817 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22876 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22877 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22936 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22937 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22996 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22997 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23056 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23057 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23116 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23117 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23176 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23177 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23236 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23237 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACTAAT 23296 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23297 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23356 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23357 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23416 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23417 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23476 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23477 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23536 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23537 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23596 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23597 CTGCATGATGCTTAG 23611 >DQ389651 Bovine coronavirus isolate KCD10 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ389644 Bovine coronavirus isolate KCD3 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AF391542 Bovine coronavirus isolate BCoV-LUN, complete genome Length = 31028 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCAGCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >AF391541 Bovine coronavirus isolate BCoV-ENT, complete genome Length = 31028 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >AF220295 Bovine coronavirus strain Quebec, complete genome Length = 31100 E-value = 0, Score = 2134, Bitscore = 1925.48, Identities = 1137/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22366 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22425 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22426 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22485 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22486 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22545 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22546 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22605 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22606 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22665 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22666 GAGGGTCTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22725 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22726 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22785 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22786 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22845 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22846 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22905 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22906 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22965 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22966 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23025 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23026 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23085 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23086 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23145 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23146 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 23205 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23206 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23265 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23266 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23325 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23326 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23385 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23386 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23445 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23446 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23505 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23506 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 23565 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23566 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23625 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23626 CTGCATGATGCTTAG 23640 >OP037421 Bovine coronavirus isolate VDC/2018/06/E, partial genome Length = 31011 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22765 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+||||||||| ||||||+|||||||||||||||||||| Sbjct: 22885 TTTAGGGATTATTATTATAAGGTTGAAGCTGAGTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23005 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23365 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23425 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23485 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23545 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >ON142320 Bovine coronavirus isolate BCoV7/2021/CHN, complete genome Length = 31008 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+||||| ||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATGACTCACCTTGTTTATCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23475 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23535 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >MW711312 Bovine coronavirus strain SWUN/NMG-D10/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+|| ||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCTTATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MW711310 Bovine coronavirus strain SWUN/XC-7/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MW711287 Bovine coronavirus isolate SWUN/NMG-D10/2020, complete genome Length = 31008 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+|| ||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCTTATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MK045998 Bovine coronavirus isolate HCM306 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+||||||||||| Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTC 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >LC494185 Bovine coronavirus TCG-26 RNA, complete genome Length = 30942 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|||||||| |||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTGTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494131 Bovine coronavirus IWT-3 RNA, complete genome Length = 30955 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGGTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACGGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 |||||| |||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTATTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGCCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTTAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >FJ938067 Human enteric coronavirus strain 4408, complete genome Length = 30953 E-value = 0, Score = 2131, Bitscore = 1922.78, Identities = 1140/1275 (89%), Positives = 1275/1275 (100%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22293 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAA 22352 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||||||||||||||||||||||||||||||||||||||| Sbjct: 22353 AACCCTCCTACCAATGTTGTTTCKCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22412 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22413 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22472 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22473 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22532 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22533 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22592 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22593 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22652 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22653 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22712 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||||||||||||||||||+|+|+|||+ Sbjct: 22713 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTAYAATGGCTCTGCACAATCTACAGCT 22772 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22773 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22832 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|+|||||||||||||||||| Sbjct: 22833 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTRTCAGGTTGTGACGAGTAT 22892 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22893 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22952 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+||||+||||| Sbjct: 22953 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCYACTGAAACC 23012 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23013 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGCAATTATTTA 23072 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||||||+||||||||||||||||++|||||| Sbjct: 23073 GCCATTTCAAATGAGCTATTGTTAACTGTTCCYACTAAAGCAATCTGTCTTAATAAGCGT 23132 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23133 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23192 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23193 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23252 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23253 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23312 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23313 TTGTTATATGATTCACCCTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23372 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23373 AGTGTTTGGCCTCTCTACCCCTATGGCAGGTGTCCTACTGCTGCTGATATTAATACCCCT 23432 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23433 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23492 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23493 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23552 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23553 CTGCATGATGCTTAG 23567 >DQ389643 Bovine coronavirus isolate KCD2 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+||||| |||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACGTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AF058943 Bovine coronavirus strain LSU-94LSS-051-2 32 kDa putative non-structural protein, hemagglutinin esterase (HE), spike glycoprotein (S), truncated 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, structural protein E (E), struc Length = 9538 E-value = 0, Score = 2132, Bitscore = 1923.68, Identities = 1137/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 863 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 922 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 923 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 982 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 983 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 1042 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1043 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1102 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1103 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 1162 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 1163 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 1222 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+|||||||||||| |||||||||||||||||||+||| Sbjct: 1223 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGCTTTATAAGAATATGGCTGTGTAT 1282 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1283 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1342 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1343 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1402 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1403 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 1462 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1463 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1522 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1523 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 1582 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1583 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 1642 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1643 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 1702 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1703 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCATGCAGTCTGAT 1762 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1763 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 1822 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1823 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1882 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1883 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1942 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1943 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 2002 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2003 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 2062 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 2063 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2122 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2123 CTGCATGATGCTTAG 2137 >OP296992 Bovine coronavirus isolate p95, complete genome Length = 31032 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+ ||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCCGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGTT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP186334 Bovine coronavirus isolate KBR-1 HE gene, complete cds Length = 1275 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP037420 Bovine coronavirus isolate VDC/2018/05/R, partial genome Length = 30989 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGTATAATTGGTAGCCTAGGTTTTGAT 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTTTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+|||||||||||||| |||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >OP037419 Bovine coronavirus isolate VDC/2018/04/R, partial genome Length = 31005 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGTATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAACAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 || ||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAAGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTTTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037414 Bovine coronavirus isolate VDC/2017/01/E, partial genome Length = 30988 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22324 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22383 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22384 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22443 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22444 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22503 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22504 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22563 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22564 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22623 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22624 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22683 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22684 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22743 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22744 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22803 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22804 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22863 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22864 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22923 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22924 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22983 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22984 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23043 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23044 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23103 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23104 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23163 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||| ||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23164 AAGGATTTCACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23223 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23224 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23283 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23284 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23343 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23344 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23403 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23404 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23463 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23464 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23523 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23524 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23583 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23584 CTGCATGATGCTTAG 23598 >OP037409 Bovine coronavirus isolate SDSU/2021/06/R, partial genome Length = 30822 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22283 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22342 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22343 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22402 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22403 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22462 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22463 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22522 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22523 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22582 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22583 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22642 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22643 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22702 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22703 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22762 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22763 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22822 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22823 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22882 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22883 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22942 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22943 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23002 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23003 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23062 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|| ||| Sbjct: 23063 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAATCGT 23122 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23123 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23182 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23183 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23242 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23243 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23302 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23303 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23362 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23363 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23422 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23423 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23482 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23483 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23542 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23543 CTGCATGATGCTTAG 23557 >OP037407 Bovine coronavirus isolate SDSU/2021/04/R, partial genome Length = 30968 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22312 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22371 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22372 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22431 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22432 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22491 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22492 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22551 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22552 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22611 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22612 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22671 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22672 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22731 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22732 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22791 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22792 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22851 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22852 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22911 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22912 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22971 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22972 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23031 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23032 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23091 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23092 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23151 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||||| |||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23152 AAGGACTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23211 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23212 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23271 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23272 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23331 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23332 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23391 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23392 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23451 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23452 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23511 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23512 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23571 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23572 CTGCATGATGCTTAG 23586 >OP037390 Bovine coronavirus isolate MARC/2019/02/R, partial genome Length = 31005 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTCACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037389 Bovine coronavirus isolate MARC/2019/01/R, partial genome Length = 31003 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+|||| |+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTCTTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037384 Bovine coronavirus isolate MARC/2017/05/R, partial genome Length = 31005 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGTATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 |+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 GATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTTTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037377 Bovine coronavirus isolate MARC/2016/05/R, partial genome Length = 31004 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++| ||||||||+ Sbjct: 22340 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTTGGTTTTGAT 22399 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22400 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22459 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22460 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22519 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22520 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22579 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22580 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22639 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22640 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22699 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22700 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22759 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22760 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22819 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22820 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22879 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22880 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22939 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22940 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22999 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23000 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23059 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23060 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23119 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23120 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23179 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23180 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23239 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23240 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23299 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23300 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23359 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23360 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23419 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23420 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23479 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23480 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23539 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23540 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23599 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23600 CTGCATGATGCTTAG 23614 >OP037371 Bovine coronavirus isolate MARC/2015/01/R, partial genome Length = 31017 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAA 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCCTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCCGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++||||||| |||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAGGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MT543034 Bovine coronavirus strain BCV 22BC07SK hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK903507 Bovine coronavirus isolate BCoV/CH/HB-BD/2019 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||| |||||||| Sbjct: 1261 CTGCATCATGCTTAG 1275 >MH043955 Bovine coronavirus isolate 7-16-23, complete genome Length = 31032 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >M80842 Bovine coronavirus hemagglutinin mRNA, partial cds Length = 1304 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAA 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGCAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 || |||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TACGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTTTGGCCTCTCTACCCCTATGGCAGGTGTCCTACTGCTGCTGATATTAACACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >LC494179 Bovine coronavirus TCG-20 RNA, complete genome Length = 30936 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22315 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22374 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22375 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22434 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22435 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22494 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22495 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22554 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22555 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22614 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22615 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22674 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22675 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22734 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22735 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22794 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22795 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22854 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22855 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22914 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||| +||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22915 ATCGTACCACTTTGTATTTCCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22974 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22975 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23034 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23035 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23094 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23095 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23154 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23155 AAGGATTTTACGCCTGTACAGGTCGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23214 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23215 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23274 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23275 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23334 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23335 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23394 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23395 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23454 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23455 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23514 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23515 GCTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23574 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23575 CTGCATGATGCTTAG 23589 >LC494177 Bovine coronavirus TCG-9 RNA, complete genome Length = 30936 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22313 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22372 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22373 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22432 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22433 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22492 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22493 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22552 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22553 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22612 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+ |||||+||||||||| Sbjct: 22613 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCAAATCTGGTAGTAATGAT 22672 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22673 ATTTGGATGCAGAATAAAGGCTTTTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22732 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22733 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22792 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22793 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22852 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22853 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22913 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23093 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCTGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23453 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23513 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >LC494174 Bovine coronavirus TCG-8 RNA, complete genome Length = 30951 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+|||| |||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTTGAACAATGCCAGGCTTTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494163 Bovine coronavirus TCG-2 RNA, complete genome Length = 30923 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22303 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22362 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22363 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22422 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22423 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22482 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||| ||||||||+|||||| Sbjct: 22483 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGTAACTCCATCTTTAGG 22542 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22543 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22602 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22603 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22662 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22663 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22722 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22723 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22782 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22783 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22842 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22843 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22902 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22903 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22962 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22963 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23022 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23023 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23082 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23083 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23142 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23143 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCTGTCTGAT 23202 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23203 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23262 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23263 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23322 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23323 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23382 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23383 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23442 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23443 GATGTACCTATTTGTGTGTATGATCCTCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23502 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23503 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23562 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23563 CTGCATGATGCTTAG 23577 >LC494162 Bovine coronavirus TCG-3 RNA, complete genome Length = 30936 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22315 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22374 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22375 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22434 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22435 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22494 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22495 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22554 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22555 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22614 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22615 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22674 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22675 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22734 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22735 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22794 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22795 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22854 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22855 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22914 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22915 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22974 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22975 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23034 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23035 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23094 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23095 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23154 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23155 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23214 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23215 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23274 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 || |||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23275 TACGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23334 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23335 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23394 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23395 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23454 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23455 GATGTACCTATTTGTGTGTATGATCCTCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23514 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23515 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23574 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23575 CTGCATGATGCTTAG 23589 >LC494156 Bovine coronavirus SHG-3 RNA, complete genome Length = 30942 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||| | Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTATG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494144 Bovine coronavirus IWT-20 RNA, complete genome Length = 30954 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCGACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+| ||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTTCCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCTGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494139 Bovine coronavirus IWT-13 RNA, complete genome Length = 30942 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22317 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22376 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22377 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22436 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22437 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22496 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22497 AACCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22556 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22557 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22616 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22617 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22676 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22677 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22736 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22737 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22796 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22797 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22856 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22857 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22916 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22917 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22976 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22977 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23036 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23037 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23096 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23097 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23156 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23157 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23216 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23217 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23276 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23277 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23336 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23337 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23396 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23397 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23456 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+ |||||+||||||||||||||||+|||||||+| Sbjct: 23457 GATGTACCTATTTGTGTGTATGATCCTTTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23516 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23517 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23576 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23577 CTGCATGATGCTTAG 23591 >LC494138 Bovine coronavirus IWT-12 RNA, complete genome Length = 30954 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++||| |||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCTTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAC 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494133 Bovine coronavirus IWT-5 RNA, complete genome Length = 30954 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494132 Bovine coronavirus IWT-4 RNA, complete genome Length = 30954 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGGTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACGGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATTAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGCCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTTAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGACAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >LC494130 Bovine coronavirus IWT-2 RNA, complete genome Length = 30954 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||| |||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGACAACTCCATCTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >KX982264 Bovine coronavirus isolate BCoV_2014_13, complete genome Length = 30847 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22278 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22337 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22338 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22397 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22398 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22457 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22458 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22517 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22518 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTAT 22577 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22578 GAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGAT 22637 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22638 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22697 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22698 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22757 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22758 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22817 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22818 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 22877 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22878 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22937 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22938 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22997 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22998 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23057 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23058 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23117 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23118 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23177 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23178 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23237 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23238 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23297 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23298 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23357 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||| ||||||++||||||+||+||| Sbjct: 23358 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACAGCTGCTGATATTAATACACCT 23417 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23418 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23477 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23478 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23537 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23538 CTGCATGATGCTTAG 23552 >HM573321 Bovine coronavirus strain Wisent 10/01 hemagglutinin-esterase protein precursor (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGTGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >FJ938066 Bovine respiratory coronavirus bovine/US/OH-440-TC/1996, complete genome Length = 30953 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22307 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22366 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22367 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22426 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22427 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22486 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22487 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22546 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22547 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22606 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22607 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22666 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22667 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22726 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22727 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22786 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 22787 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 22846 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22847 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22906 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22907 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22966 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22967 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23026 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23027 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23086 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23087 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23146 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23147 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCATGCAGTCTGAT 23206 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23207 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23266 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23267 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23326 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23327 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23386 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23387 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23446 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23447 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23506 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23507 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGAGGATAATGGTACTAGG 23566 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23567 CTGCATGATGCTTAG 23581 >EU401975 Bovine coronavirus isolate 0501 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||| ||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACCAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >EU019216 Bovine coronavirus Bubalus/Italy/179/07-11 nonstructural protein 1b (ORF1b) gene, partial cds; and 32 kDa nonstructural protein, hemagglutinin-esterase (HE), spike protein (S), 4.9 kDa nonstructural protein, 4.8 kDa nonstructural protein, 12.7 kDa nonstructural protein, envelope protein (E), membran Length = 9679 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1048 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 1107 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1108 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1167 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1168 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 1227 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1228 AACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1287 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1288 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 1347 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 1348 GAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGAT 1407 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1408 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 1467 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1468 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 1527 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1528 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1587 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1588 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 1647 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||| ||+|||||+||||||||||||||||||||+ Sbjct: 1648 ATCGTACCACTTTGTATTTTTAACGGCAATTTTTTGTCGAATACAAAGTATTATGATGAT 1707 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1708 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 1767 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1768 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 1827 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1828 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 1887 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1888 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 1947 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1948 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 2007 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 2008 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2067 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 2068 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 2127 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 2128 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 2187 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2188 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 2247 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 2248 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2307 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2308 CTGCATGATGCTTAG 2322 >EF424616 Bovine coronavirus E-AH65-TC, complete genome Length = 30970 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 ATTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+ ||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTAGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >EF424615 Bovine coronavirus E-AH65, complete genome Length = 31017 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCAGCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAACGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|| ||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCCGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >DQ915164 Bovine coronavirus isolate Alpaca, complete genome Length = 31076 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||| |||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATCTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCACGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >AH014870 Bovine coronavirus strain KWD5 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014866 Bovine coronavirus strain KWD1 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH010363 Bovine coronavirus hemagglutinin (HE) gene, complete cds; spike protein S1 subunit (S1) gene, partial cds; and 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, and E small membrane protein genes, complete cds Length = 4663 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCTTAGATTTGTCCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTCTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||| ||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCAGACTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF230528 Bovine coronavirus isolate Quebec BCQ.3708 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 || ||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AATCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF230527 Bovine coronavirus isolate Quebec BCQ.701 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 || ||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AATCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF230526 Bovine coronavirus isolate Quebec BCQ.376 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 || ||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AATCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF230524 Bovine coronavirus isolate Quebec BCQ.2442 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||| ||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTTGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF230523 Bovine coronavirus isolate Quebec BCQ.2508 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||| ||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTTGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATCCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF058944 Bovine coronavirus strain OK-0514-3 32 kDa putative non-structural protein, hemagglutinin esterase (HE), spike glycoprotein (S), 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, structural protein E (E), structural protein M Length = 9538 E-value = 0, Score = 2129, Bitscore = 1920.97, Identities = 1136/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 863 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 922 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 923 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 982 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 983 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 1042 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1043 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1102 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1103 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 1162 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 1163 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 1222 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1223 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 1282 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1283 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 1342 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1343 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1402 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1403 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 1462 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1463 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1522 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1523 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 1582 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1583 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 1642 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1643 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 1702 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1703 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1762 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1763 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 1822 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1823 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1882 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1883 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1942 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1943 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 2002 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||| +| Sbjct: 2003 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGAGT 2062 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 2063 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2122 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2123 CTGCATGATGCTTAG 2137 >OP037434 Bovine coronavirus isolate VDC/2019/05/E, partial genome Length = 31015 E-value = 0, Score = 2127, Bitscore = 1919.17, Identities = 1136/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22348 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22407 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22408 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22467 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22468 CGCTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22527 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22528 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22587 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22588 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22647 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22648 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22707 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22708 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22767 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22768 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22827 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22828 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22887 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22888 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22947 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22948 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 23007 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23008 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23067 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23068 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23127 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23128 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23187 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23188 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23247 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23248 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23307 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 23308 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGC 23367 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23368 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23427 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23428 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23487 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23488 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23547 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23548 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23607 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23608 CTGCATGATGCTTAG 23622 >OP037429 Bovine coronavirus isolate VDC/2019/01/E, partial genome Length = 31011 E-value = 0, Score = 2127, Bitscore = 1919.17, Identities = 1136/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22464 CGCTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22764 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGC 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23424 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >LC494160 Bovine coronavirus TCG-4 RNA, complete genome Length = 30954 E-value = 0, Score = 2127, Bitscore = 1919.17, Identities = 1136/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22328 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22387 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22388 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22447 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22448 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22507 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22508 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22567 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22568 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22627 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22628 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22687 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22688 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22747 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22748 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22807 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22808 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22928 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCTAATACAAAGTATTATGATGAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+|| ||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACTCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23468 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23528 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >DQ389649 Bovine coronavirus isolate KCD8 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2126, Bitscore = 1918.27, Identities = 1135/1275 (89%), Positives = 1274/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+||+||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCYGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||| ||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATATTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ389647 Bovine coronavirus isolate KCD6 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2127, Bitscore = 1919.17, Identities = 1136/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+ ||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACACCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+||||| |||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACGTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH010241 Bovine coronavirus isolate Ontario BCO.43277 hemagglutinin-esterase (HE) gene, complete cds; spike protein S1 subunit (S1) gene, partial cds; and 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, and E small membrane protein genes, complete cds Length = 4663 E-value = 0, Score = 2127, Bitscore = 1919.17, Identities = 1136/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 || ||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AATCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 || |||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGGTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >OP037437 Bovine coronavirus isolate VDC/2022/02/E, partial genome Length = 31001 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22337 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22396 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22397 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22456 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22457 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22516 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22517 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22576 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22577 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22636 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22637 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22696 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22697 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22756 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22757 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22816 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22817 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22876 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22877 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22936 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22937 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22996 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22997 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23056 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23057 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23116 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23117 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23176 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23177 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23236 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23237 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23296 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23297 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23356 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23357 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23416 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23417 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23476 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23477 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23536 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23537 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23596 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23597 CTGCATGATGCTTAG 23611 >OP037416 Bovine coronavirus isolate VDC/2018/01/R, partial genome Length = 31006 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGTAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| || Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >OP037406 Bovine coronavirus isolate SDSU/2021/03/R, partial genome Length = 30941 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22300 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22359 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22360 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22419 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22420 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22479 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22480 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22539 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22540 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22599 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22600 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22659 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22660 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22719 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22720 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22779 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22780 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22839 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22840 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22899 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22900 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAC 22959 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22960 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23019 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23020 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23079 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23080 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23139 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23140 AAGGATTTTACTCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23199 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23200 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23259 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23260 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23319 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23320 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23379 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23380 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23439 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23440 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23499 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23500 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23559 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23560 CTGCATGATGCTTAG 23574 >OP037388 Bovine coronavirus isolate MARC/2018/05/E, partial genome Length = 31016 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|| |||||||+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAAGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+| |||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTCAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTCAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037380 Bovine coronavirus isolate MARC/2017/01/R, partial genome Length = 31013 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+|||+ Sbjct: 22761 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ |||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGTATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCACGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037372 Bovine coronavirus isolate MARC/2015/02/R, partial genome Length = 31016 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||| +||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAACGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTTTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||| |||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGACTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MW711320 Bovine coronavirus strain SWUN/NMG-13/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ |||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGTATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095142 Bovine coronavirus strain BCOV-China/SWUN/LN3/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH203059 Bovine coronavirus strain ND65 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||| ||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTGTTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||| ||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTCACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH043953 Bovine coronavirus isolate 4-17-25, complete genome Length = 31032 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCGCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCCTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||| ||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTCACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MH043952 Bovine coronavirus isolate 4-17-03, complete genome Length = 31019 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAA 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCCTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+| |||||||||||||||||+|||||| Sbjct: 22532 AATCCCGCCTTGTGTGGTTCTGGTAAAATATCATCCAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+|| |||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTCAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MG518518 Water deer coronavirus isolate W17-18, complete genome Length = 31034 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >LC494188 Bovine coronavirus TCG-29 RNA, complete genome Length = 30942 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||| ||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGCAAAATATCATCTAAATTTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >LC494126 Bovine coronavirus GIF-1 RNA, complete genome Length = 30951 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||| ||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGCAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||| ||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTCACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >L38963 Bovine coronavirus hemagglutinin gene, complete cds Length = 1304 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+ |||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACCTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||| ||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTAGTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >EU401979 Bovine coronavirus strain BC94 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||| +++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTTGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >EF445634 Bovine coronavirus strain 339/06 hemagglutinin-esterase (HE) and spike protein (S) genes, complete cds Length = 5659 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 261 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 320 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 321 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 380 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 381 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 440 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 441 AACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 500 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 501 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAC 560 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 561 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 620 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 621 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 680 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 681 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 740 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 741 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 800 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 801 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 860 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 861 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 920 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 921 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 980 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 981 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 1040 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1041 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 1100 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1101 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 1160 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||| |||||||||||||||||||||||+||+ Sbjct: 1161 AACATGACGGCAGTTGCTTGTCAACCCCCGTATTGTTATTTTCGTAATTCTACTACCAAT 1220 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1221 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1280 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1281 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1340 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1341 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 1400 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1401 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1460 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1461 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1520 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1521 CTGCATGATGCTTAG 1535 >DQ389642 Bovine coronavirus isolate KCD1 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||| || |||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGCCGGGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH010063 Bovine coronavirus isolate Ontario BCO.44175 hemagglutinin-esterase (HE) gene, complete cds; spike protein S1 subunit (S1) gene, partial cds; and 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-stuctural protein, and E small protein membrane pr Length = 4663 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||| |||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTACTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||| ||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTTCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AH010061 Bovine coronavirus isolate Quebec BCQ.7373 hemagglutinin-esterase (HE) gene, complete cds; spike protein S1 subunit (S1) gene, partial cds; and 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, and E small membrane protein gen Length = 4663 E-value = 0, Score = 2124, Bitscore = 1916.46, Identities = 1135/1275 (89%), Positives = 1273/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||| ||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTCTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGGTTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF230525 Bovine coronavirus isolate Quebec BCQ.2439 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2125, Bitscore = 1917.37, Identities = 1136/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+||||||||||| Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTC 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 |||||| |||+||||||||||+||||||||||||||||||+||+ |||||+||||||||| Sbjct: 316 GAGGGTATTAATTTTACGCCTTATCATGCCTTTAAATGCACCACCTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >OP037430 Bovine coronavirus isolate VDC/2019/01/R, partial genome Length = 31014 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTTAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGCTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22762 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 ||||||||||||||||||||| |+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAAACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAACACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >OP037397 Bovine coronavirus isolate SDSU/2020/01/R, partial genome Length = 31002 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22456 CGCTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22516 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22756 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22816 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||| +|||||||||||||||||||| Sbjct: 22876 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTACTTGTCAGGTTGTGACGAGTAT 22935 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22936 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 22995 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22996 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23055 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23056 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23115 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+ |||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23116 GCCATTTCAAATCAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23175 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23176 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23235 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23236 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23295 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23296 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23355 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23356 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23415 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23416 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23475 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23476 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23535 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23536 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23595 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23596 CTGCATGATGCTTAG 23610 >OP037395 Bovine coronavirus isolate MARC/2021/02/R, partial genome Length = 31007 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22353 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22412 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22413 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22472 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22473 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22532 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22533 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22592 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22593 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22652 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22653 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22712 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22713 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22772 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22773 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22832 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22833 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22892 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22893 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22952 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22953 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23012 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23013 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23072 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23073 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23132 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23133 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23192 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23193 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23252 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23253 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23312 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23313 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23372 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23373 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23432 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23433 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23492 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23493 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23552 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23553 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23612 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23613 CTGCATGATGCTTAG 23627 >MZ100070 Tapir coronavirus 1044512-1, complete genome Length = 31016 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MW711318 Bovine coronavirus strain SWUN/NMG-9/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||| ||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAACCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MW711316 Bovine coronavirus strain SWUN/NMG-7/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCATATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTTGGGGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ389650 Bovine coronavirus isolate KCD9 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+ ||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACACCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+||||| |||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACGTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGATACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ389648 Bovine coronavirus isolate KCD7 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2122, Bitscore = 1914.66, Identities = 1135/1275 (89%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+|| |||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTATGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+ ||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACACCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+||||| |||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACGTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186344 Bovine coronavirus isolate KHN-13 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186343 Bovine coronavirus isolate KHN-11 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186342 Bovine coronavirus isolate KIS-1 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186341 Bovine coronavirus isolate KBR-2 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186340 Bovine coronavirus isolate KNS-11 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186337 Bovine coronavirus isolate KJS-1 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186336 Bovine coronavirus isolate KHS HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCTCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186333 Bovine coronavirus isolate KJS-5 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186331 Bovine coronavirus isolate KJS-4 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186330 Bovine coronavirus isolate KTY-7 HE gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP037436 Bovine coronavirus isolate VDC/2022/01/E, partial genome Length = 31023 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAC 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||| +|||||||||||||||||||| Sbjct: 22892 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTACTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||||||||| |||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAGTTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037399 Bovine coronavirus isolate SDSU/2020/03/R, partial genome Length = 31027 E-value = 0, Score = 2120, Bitscore = 1912.86, Identities = 1135/1275 (89%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22351 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22471 CGCTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22531 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+|||||||||||| |||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGCTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22771 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22830 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 22831 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 22890 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22891 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 23311 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGC 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23431 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23491 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23551 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >OP037392 Bovine coronavirus isolate MARC/2020/02/R, partial genome Length = 31013 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23429 AGTGTTTGGCCTCTTCACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23489 GATGTACCTATTTGTTTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23549 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >MZ825083 Bovine coronavirus isolate KCD BA 2020 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MT543033 Bovine coronavirus strain BCV 31BC02Sk hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+ Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGG 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095144 Bovine coronavirus strain BCOV-China/SWUN/LN5/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| |+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 181 AATCCTGTCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095141 Bovine coronavirus strain BCOV-China/SWUN/LN2/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| |+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 181 AATCCTGTCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK045994 Bovine coronavirus isolate NA226 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|| ||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCTGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCATTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+| +||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTCCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||| ||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCTATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MG757142 Bovine coronavirus isolate ICSA-pool-LBA, complete genome Length = 30939 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||| |+ Sbjct: 22249 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTT---AT 22305 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22306 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22365 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22366 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22425 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22426 AACCCCGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22485 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22486 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22545 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22546 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGAT 22605 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22606 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22665 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22666 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22725 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22726 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22785 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22786 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 22845 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22846 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22905 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22906 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22965 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22966 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23025 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23026 GCCATTTCAAACGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23085 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23086 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23145 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23146 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23205 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23206 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23265 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23266 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23325 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23326 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23385 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23386 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23445 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23446 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23505 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23506 CTGCATGATGCTTAG 23520 >MG757140 Bovine coronavirus isolate ICSA16-LBA, complete genome Length = 31024 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||| |+ Sbjct: 22350 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTT---AT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22527 AACCCCGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22647 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22826 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22827 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22886 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22887 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 22946 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22947 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23006 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23007 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23066 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23067 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23126 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23127 GCCATTTCAAACGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23186 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23187 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23246 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23247 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23306 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23307 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23366 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23367 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23426 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23427 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23486 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23487 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23546 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23547 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23606 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23607 CTGCATGATGCTTAG 23621 >MG757138 Bovine coronavirus isolate ICSA21-LBA, complete genome Length = 31026 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22949 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||||||||||+||||| ++|||+||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACCGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+ || Sbjct: 23429 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACATCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23489 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23549 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >LC494173 Bovine coronavirus TCG-7 RNA, complete genome Length = 30951 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22505 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTATAGCC 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||| ||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22805 TTTTGTAAATCTGGTGGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||| ||+|||||+||||||||||||||||||||+ Sbjct: 22925 ATCGTACCACTTTGTATTTTCAACGGCAACTTTTTGTCGAATACAAAGTATTATGATGAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+| +||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTCCTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCTGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23405 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTAATATTAATACCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23465 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23525 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >JX860640 Canine respiratory coronavirus strain K37, complete genome Length = 31028 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||| +++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTTGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+|||||| |||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCATAATAAAGGCTTGTTTTACTCTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >GQ918142 Canine respiratory coronavirus strain K37 32 kDa protein, hemagglutinin-esterase, spike protein, 4.9 kDa protein, 2.7 kDa protein, 12.8 kDa protein, E protein, membrane protein, nucleocapsid protein, and internal N-gene protein genes, complete cds Length = 9686 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||| +++||||||||||+ Sbjct: 1017 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTTGCCTAGGTTTTGAT 1076 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1077 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1136 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1137 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 1196 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1197 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1256 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1257 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 1316 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 1317 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 1376 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+|||||| |||||+|||||||||||||||||||+||| Sbjct: 1377 ATTTGGATGCATAATAAAGGCTTGTTTTACTCTCAGGTTTATAAGAATATGGCTGTGTAT 1436 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1437 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1496 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1497 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1556 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1557 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 1616 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1617 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1676 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1677 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 1736 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1737 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 1796 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1797 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 1856 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1857 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 1916 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1917 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1976 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1977 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2036 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 2037 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 2096 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 2097 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 2156 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2157 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 2216 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 2217 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2276 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2277 CTGCATGATGCTTAG 2291 >EU401977 Bovine coronavirus isolate A3 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||| +++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTTGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|| |||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATTATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ994167 Bovine coronavirus isolate KWD16 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||| ++ ||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTCCCCAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH010062 Bovine coronavirus isolate Quebec BCQ.1523 hemagglutinin-esterase (HE) gene, complete cds; spike protein S1 subunit (S1) gene, partial cds; and 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, and E small membrane protein gen Length = 4663 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||| ||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTTGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||| |||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGTTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF339836 Bovine coronavirus isolate Quebec BCQ.3994 hemagglutinin-esterase (HE) gene, complete cds; and spike protein S1 subunit (S1) gene, partial cds Length = 3608 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||| |||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTCTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||| |||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTACTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AB354579 Bovine coronavirus genomic RNA, complete genome, strain: Kakegawa Length = 31038 E-value = 0, Score = 2119, Bitscore = 1911.96, Identities = 1134/1275 (88%), Positives = 1272/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||| +++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTTGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|| |||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATTATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >LC494140 Bovine coronavirus IWT-14 RNA, complete genome Length = 30939 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22313 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22372 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+| ||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22373 AACCCTCCTACCAATGTCGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22432 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22433 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22492 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22493 AATCCCGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATCTTTAGG 22552 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22553 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22612 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22613 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22672 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22673 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22732 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||| ||||||||||+|+|+|||+ Sbjct: 22733 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGACTCTGCACAATCTAAAGCC 22792 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22793 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22852 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22853 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22913 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23093 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+ +|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAAGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+ ||||||+| Sbjct: 23453 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTTTTTTGGGT 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23513 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >OP037441 Bovine coronavirus isolate VDC/2022/06/E, partial genome Length = 31006 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+ |+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTGCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >OP037438 Bovine coronavirus isolate VDC/2022/03/E, partial genome Length = 31016 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+ |+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTGCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP037408 Bovine coronavirus isolate SDSU/2021/05/R, partial genome Length = 31021 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22350 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22409 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||| ||||||||||||||||||||| Sbjct: 22410 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGACTGGTTTTTATTTGGTGACAGT 22469 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22470 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22529 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22530 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22589 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22590 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22649 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||| ||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22650 GAGGGTGTTAATTTCACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22709 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22710 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22769 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22770 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22829 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22830 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22889 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22890 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22949 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22950 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 23009 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23010 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23069 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23070 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23129 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23130 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23189 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23190 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23249 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23250 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23309 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 23310 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGC 23369 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23370 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23429 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23430 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23489 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23490 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23549 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23550 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23609 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23610 CTGCATGATGCTTAG 23624 >OP037396 Bovine coronavirus isolate MARC/2021/03/R, partial genome Length = 31008 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23424 AGTGTCTGGCCTCTTCACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCTATTTGTTTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >OP037394 Bovine coronavirus isolate MARC/2021/01/R, partial genome Length = 31005 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTTCACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >ON792962 Bovine coronavirus strain ABGEBB-129, complete genome Length = 31005 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22496 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22796 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22915 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22916 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22975 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22976 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23035 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23036 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23095 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23096 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23155 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23156 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23215 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23216 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23275 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23276 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23335 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23336 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23395 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23396 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23455 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23456 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23515 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23516 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23575 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23576 CTGCATGATGCTTAG 23590 >ON792960 Bovine coronavirus strain ABGEBB-110, complete genome Length = 31122 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22427 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22486 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22487 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22546 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22547 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22606 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22607 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22666 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22667 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22726 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22727 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22786 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22787 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22846 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22847 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22906 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22907 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22966 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22967 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 23026 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 23027 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23086 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23087 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23146 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23147 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23206 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23207 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23266 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23267 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23326 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23327 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23386 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23387 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23446 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23447 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23506 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23507 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23566 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23567 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23626 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23627 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23686 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23687 CTGCATGATGCTTAG 23701 >ON792958 Bovine coronavirus strain ABGEBB-78, complete genome Length = 30924 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22243 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22302 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22303 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22362 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22363 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22422 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22423 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22482 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22483 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22542 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22543 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22602 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22603 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22662 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22663 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22722 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22723 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22782 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22783 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22842 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22843 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22902 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22903 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 22962 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22963 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23022 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23023 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23082 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23083 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23142 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23143 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23202 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23203 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23262 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23263 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23322 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23323 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23382 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23383 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23442 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23443 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23502 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23503 CTGCATGATGCTTAG 23517 >ON792953 Bovine coronavirus strain ABGEB0-88, complete genome Length = 31061 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22347 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22527 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22647 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22826 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22827 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22886 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22887 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22946 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22947 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23006 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23007 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23066 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23067 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23126 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23127 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23186 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23187 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23246 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23247 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23306 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23307 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23366 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23367 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23426 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23427 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23486 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23487 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23546 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23547 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23606 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23607 CTGCATGATGCTTAG 23621 >ON792952 Bovine coronavirus strain ABGEB0-81, complete genome Length = 31124 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22403 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22462 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22463 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22522 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22523 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22582 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22583 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22642 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22643 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22702 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22703 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22762 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22763 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22822 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22823 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22882 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22883 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22942 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22943 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 23002 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 23003 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23062 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23063 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23122 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23123 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23182 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23183 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23242 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23243 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23302 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23303 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23362 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23363 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23422 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23423 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23482 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23483 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23542 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23543 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23602 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23603 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23662 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23663 CTGCATGATGCTTAG 23677 >ON792951 Bovine coronavirus strain ABGEB0-79, complete genome Length = 31060 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22360 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22419 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22420 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22479 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22480 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22539 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22540 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22599 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22600 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22659 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22660 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22719 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22720 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22779 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22780 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22839 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22840 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22899 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22900 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22959 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22960 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23019 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23020 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23079 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23080 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23139 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23140 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23199 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23200 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23259 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23260 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23319 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23320 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23379 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23380 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23439 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23440 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23499 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23500 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23559 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23560 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23619 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23620 CTGCATGATGCTTAG 23634 >ON792950 Bovine coronavirus strain ABGEB0-78, complete genome Length = 31017 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22308 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22367 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22368 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22427 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22428 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22487 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22488 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22547 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22548 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22607 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22608 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22667 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22668 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22727 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22728 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22787 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22788 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22847 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22848 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22907 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22908 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22967 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22968 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23027 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23028 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23087 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23088 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23147 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23148 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23207 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23208 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23267 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23268 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23327 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23328 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23387 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23388 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23447 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23448 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23507 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23508 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23567 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23568 CTGCATGATGCTTAG 23582 >ON792949 Bovine coronavirus strain ABGEB0-74, complete genome Length = 31078 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22363 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22422 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22423 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22482 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22483 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22542 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22543 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22602 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22603 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22662 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22663 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22722 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22723 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22782 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22783 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22842 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22843 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22902 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22903 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22962 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22963 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23022 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23023 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23082 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23083 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23142 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23143 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23202 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23203 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23262 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23263 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23322 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23323 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23382 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23383 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23442 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23443 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23502 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23503 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23562 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23563 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23622 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23623 CTGCATGATGCTTAG 23637 >ON792948 Bovine coronavirus strain ABGEB0-72, complete genome Length = 31110 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22395 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22454 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22455 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22514 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22515 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22574 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22575 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22634 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22635 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22694 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22695 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22754 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22755 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22814 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22815 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22874 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22875 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22934 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22935 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22994 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22995 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23054 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23055 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23114 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23115 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23174 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23175 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23234 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23235 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23294 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23295 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23354 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23355 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23414 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23415 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23474 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23475 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23534 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23535 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23594 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23595 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23654 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23655 CTGCATGATGCTTAG 23669 >ON792946 Bovine coronavirus strain ABGEB0-66, complete genome Length = 31079 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22526 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22766 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22826 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22886 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22945 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22946 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23005 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23006 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23065 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23066 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23125 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23126 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23185 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23186 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23245 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23246 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23305 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23306 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23365 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23366 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23425 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23426 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23485 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23486 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23545 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23546 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23605 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23606 CTGCATGATGCTTAG 23620 >ON792945 Bovine coronavirus strain ABGEB0-62, complete genome Length = 31216 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22490 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22549 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22550 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22609 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22610 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22669 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22670 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22729 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22730 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22789 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22790 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22849 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22850 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22909 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22910 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22969 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22970 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 23029 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 23030 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 23089 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 23090 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23149 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23150 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23209 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23210 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23269 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23270 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23329 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23330 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23389 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23390 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23449 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23450 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23509 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23510 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23569 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23570 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23629 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23630 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23689 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23690 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23749 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23750 CTGCATGATGCTTAG 23764 >ON792944 Bovine coronavirus strain ABGEB0-59, complete genome Length = 30968 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22293 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22352 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22353 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22412 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22413 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22472 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22473 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22532 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22533 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22592 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22593 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22652 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22653 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22712 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22713 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22772 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22773 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22832 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22833 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22892 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22893 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22952 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22953 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23012 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23013 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23072 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23073 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23132 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23133 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23192 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23193 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23252 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23253 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23312 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23313 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23372 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23373 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23432 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23433 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23492 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23493 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23552 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23553 CTGCATGATGCTTAG 23567 >ON792943 Bovine coronavirus strain ABGEB0-56, complete genome Length = 31032 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23424 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >ON792942 Bovine coronavirus strain ABGEB0-54, complete genome Length = 31042 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22348 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22407 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22408 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22467 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22468 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22527 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22528 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22587 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22588 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22647 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22648 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22707 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22708 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22767 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22768 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22827 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22828 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22887 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22888 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22947 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22948 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23007 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23008 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23067 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23068 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23127 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23128 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23187 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23188 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23247 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23248 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23307 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23308 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23367 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23368 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23427 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23428 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23487 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23488 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23547 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23548 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23607 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23608 CTGCATGATGCTTAG 23622 >ON792941 Bovine coronavirus strain ABGEB0-52, complete genome Length = 31143 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22430 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22489 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22490 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22549 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22550 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22609 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22610 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22669 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22670 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22729 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22730 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22789 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22790 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22849 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22850 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22909 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22910 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22969 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22970 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 23029 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 23030 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23089 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23090 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23149 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23150 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23209 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23210 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23269 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23270 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23329 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23330 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23389 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23390 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23449 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23450 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23509 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23510 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23569 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23570 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23629 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23630 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23689 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23690 CTGCATGATGCTTAG 23704 >M84486 Bovine coronavirus strain LY138 hemagglutinin/esterase glycoprotein (HE) gene Length = 1304 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCTCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||| ||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTCAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+| +||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTGATATTAATAACCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTCGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >AF058942 Bovine coronavirus strain LY-138 32 kDa putative non-structural protein, hemagglutinin esterase (HE), spike glycoprotein (S), 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, structural protein E (E), structural protein M (M) Length = 9545 E-value = 0, Score = 2117, Bitscore = 1910.15, Identities = 1134/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 863 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 922 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 923 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 982 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 983 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 1042 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1043 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1102 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1103 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 1162 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 1163 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 1222 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1223 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 1282 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1283 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1342 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1343 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1402 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1403 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 1462 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1463 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1522 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1523 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 1582 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1583 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 1642 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1643 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1702 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1703 AAGGATTTTACGCCTGTACAGGTTGTTGACTCTCGGTGGAACAATGCCAGGCAGTCTGAT 1762 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1763 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1822 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1823 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1882 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||| ||||||+|+|||+||||| Sbjct: 1883 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTCAGGTATGATAATGTTAGC 1942 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+| +||| Sbjct: 1943 AGTGTCTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTGATATTAATAACCCT 2002 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2003 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 2062 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 2063 GTCGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2122 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2123 CTGCATGATGCTTAG 2137 >OP186339 Bovine coronavirus isolate KSC-2 HE gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+ ||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTTCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186335 Bovine coronavirus isolate KBR-9 HE gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||| +|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTTTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||| ||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGTAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTCCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186332 Bovine coronavirus isolate KBR-8 HE gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||| +|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTTTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||| ||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGTAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTCCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186329 Bovine coronavirus isolate KGS-2 HE gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+ ||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTTCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP037433 Bovine coronavirus isolate VDC/2019/04/E, partial genome Length = 31007 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22343 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22402 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22403 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22462 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22463 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22522 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22523 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22582 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22583 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22642 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22643 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22702 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22703 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22762 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22763 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22822 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22823 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22882 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22883 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22942 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22943 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23002 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23003 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23062 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23063 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23122 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23123 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23182 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23183 AAGGATTTTACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23242 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||| ||||||||+||+ Sbjct: 23243 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAAATCTACTACCAAT 23302 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23303 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23362 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23363 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23422 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23423 AGTGTCTGGCCTCTTCACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23482 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23483 GATGTACCTATTTGTTTGTATGACCCTCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23542 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23543 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23602 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23603 CTGCATGATGCTTAG 23617 >OP037418 Bovine coronavirus isolate VDC/2018/03/R, partial genome Length = 31007 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22340 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22399 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22400 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22459 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22460 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22519 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22520 AATCCAGCTTTGTGTGGTTTTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22579 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22580 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22639 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22640 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22699 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22700 ATTTGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22759 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22760 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22819 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22820 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22879 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22880 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22939 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22940 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22999 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|||+||||| Sbjct: 23000 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACTGAAACC 23059 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23060 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23119 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||| | |||||||||||+||+||||||||||||||||++|||||| Sbjct: 23120 GCCATTTCAAATGAGCTACTTTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23179 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23180 AAGGATTTTACGCCTGTACAGGTTGTTGACTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23239 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23240 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23299 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23300 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23359 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23360 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23419 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23420 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 23479 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23480 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23539 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23540 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23599 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23600 CTGCATGATGCTTAG 23614 >OP020174 MAG: Betacoronavirus 1 isolate BCoV_NSW_L9, complete genome Length = 30869 E-value = 0, Score = 2115, Bitscore = 1908.35, Identities = 1134/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22330 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22389 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22390 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22449 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|||||| |||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22450 CGCTCAGATTGTAATCATGTTCTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22509 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22510 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22569 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22570 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22629 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22630 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22689 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22690 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22749 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22750 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22809 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22810 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22869 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22870 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22929 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22930 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22989 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22990 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23049 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23050 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23109 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23110 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23169 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23170 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23229 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23230 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23289 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23290 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23349 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||||| |||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23350 TTGTTATATGACTCACCATGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23409 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23410 AGTGTTTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23469 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+|| ||||||+||||||||||||||||+|||||||+| Sbjct: 23470 GATGTACCTATTTGTGTGTATGATCCACTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23529 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23530 GTAGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23589 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23590 CTGCATGATGCTTAG 23604 >MW711311 Bovine coronavirus strain SWUN/NMG-D7/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2115, Bitscore = 1908.35, Identities = 1134/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||| ||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCGCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK045996 Bovine coronavirus isolate HCM304 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||| |||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATCTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|| +||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACTTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTAGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH203061 Bovine coronavirus strain PL84 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAC 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ994168 Bovine coronavirus isolate KWD17 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| ||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTGGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||| ||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACCAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACCGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ994162 Bovine coronavirus isolate KWD11 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| ||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTGGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||| ||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACCAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >DQ389646 Bovine coronavirus isolate KCD5 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+ ||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACACCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+||| |||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTCAGATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014875 Bovine coronavirus strain KWD10 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| ||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTGGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||| ||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACCAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014874 Bovine coronavirus strain KWD9 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| ||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTGGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||| ||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACCAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014873 Bovine coronavirus strain KWD8 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| ||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTGGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||| ||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACCAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014872 Bovine coronavirus strain KWD7 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2114, Bitscore = 1907.45, Identities = 1133/1275 (88%), Positives = 1271/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| ||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTGGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||| ||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACCAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGTCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTACGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP186338 Bovine coronavirus isolate KBR-12 HE gene, complete cds Length = 1275 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||| ||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATATTTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||||||| |||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCAAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+|||| ++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCCGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP037439 Bovine coronavirus isolate VDC/2022/04/E, partial genome Length = 31010 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|||| ||+|||||||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTGTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22526 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22766 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||| ||++| Sbjct: 22826 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAATCTAAT 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22886 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22945 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22946 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23005 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23006 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23065 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23066 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23125 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23126 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23185 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||| ||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23186 AAGGATTTCACTCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23245 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23246 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23305 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23306 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23365 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23366 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23425 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23426 AGTGTCTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23485 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23486 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23545 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23546 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23605 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23606 CTGCATGATGCTTAG 23620 >ON792964 Bovine coronavirus strain ABGEDB-260, complete genome Length = 31034 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22327 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22386 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22387 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22446 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22447 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22506 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22507 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22566 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22567 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22626 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22627 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22686 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22687 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22746 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22747 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22806 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22807 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22866 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22867 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22926 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22927 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22986 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22987 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23046 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23047 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23106 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23107 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23166 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23167 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23226 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23227 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23286 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23287 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23346 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+| |||+|||||||||||||||+|+|||+||||| Sbjct: 23347 TTGTTATATGACTCACCTTGTTTCTCGCTGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23406 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23407 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23466 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23467 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23526 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23527 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23586 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23587 CTGCATGATGCTTAG 23601 >ON792963 Bovine coronavirus strain ABGEDB-205, complete genome Length = 30957 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22236 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22295 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22296 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22355 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22356 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22415 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22416 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22475 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22476 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22535 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22536 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22595 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22596 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22655 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22656 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22715 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22716 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22775 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22776 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22835 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22836 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22895 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22896 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 22955 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22956 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23015 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23016 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23075 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23076 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23135 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23136 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23195 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23196 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23255 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+| |||+|||||||||||||||+|+|||+||||| Sbjct: 23256 TTGTTATATGACTCACCTTGTTTCTCGCTGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23315 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23316 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23375 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23376 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23435 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23436 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23495 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23496 CTGCATGATGCTTAG 23510 >ON792957 Bovine coronavirus strain ABGEB0-128, complete genome Length = 30879 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22204 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22263 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22264 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22323 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22324 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22383 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22384 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22443 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22444 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22503 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22504 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22563 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22564 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22623 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+||||||| |||||||+|||||||||||||||+|+|+|||+ Sbjct: 22624 CGCAGCCTTACTTTTGTTAATGTACCACATGTTTATAATGGCTCTGCACAACCTACAGCC 22683 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22684 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22743 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22744 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22803 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22804 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 22863 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 22864 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 22923 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22924 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 22983 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22984 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23043 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23044 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23103 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23104 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23163 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23164 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23223 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23224 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23283 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23284 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23343 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23344 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23403 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23404 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23463 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23464 CTGCATGATGCTTAG 23478 >ON792947 Bovine coronavirus strain ABGEB0-70, complete genome Length = 31061 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22358 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22417 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22418 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22477 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22478 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22537 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22538 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22597 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22598 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22657 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22658 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22717 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22718 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22777 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22778 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22837 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22838 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22897 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22898 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22957 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22958 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23017 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23018 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23077 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23078 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23137 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23138 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23197 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23198 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23257 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23258 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23317 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23318 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23377 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23378 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23437 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+| ++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23438 AGTATCTGGCCTCTCTTCCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23497 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23498 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23557 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23558 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23617 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23618 CTGCATGATGCTTAG 23632 >OL840244 Bovine coronavirus isolate KCD CW31 2021 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||+ |||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCATAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCTAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||| ||||||||| Sbjct: 1261 CTGCAGGATGCTTAG 1275 >MW711315 Bovine coronavirus strain SWUN/NMG-17/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCCTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTTGGGGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MW711313 Bovine coronavirus strain SWUN/NMG-4/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2112, Bitscore = 1905.64, Identities = 1133/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP037427 Bovine coronavirus isolate VDC/2018/12/E, partial genome Length = 31008 E-value = 0, Score = 2109, Bitscore = 1902.94, Identities = 1132/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22526 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22766 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22826 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||| ||||||||||||||| Sbjct: 22886 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCTGGTTGTGACGAGTAT 22945 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22946 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 23005 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23006 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23065 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23066 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 23125 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23126 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23185 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23186 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23245 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23246 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23305 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23306 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23365 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23366 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23425 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23426 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23485 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+ Sbjct: 23486 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGG 23545 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||| +|||||||||||||||| Sbjct: 23546 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGATGGATAATGGTACTAGG 23605 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23606 CTGCATGATGCTTAG 23620 >OP020177 MAG: Betacoronavirus 1 isolate BCoV_NSW_L4, complete genome Length = 30955 E-value = 0, Score = 2110, Bitscore = 1903.84, Identities = 1133/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|||||| |||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22436 CGCTCAGATTGTAATCATGTTCTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22496 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||| ||||||++| Sbjct: 22796 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGCGAAGCTAAT 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22915 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22916 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22975 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22976 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23035 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23036 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23095 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23096 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23155 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23156 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23215 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23216 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23275 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23276 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23335 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||||| |||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23336 TTGTTATATGACTCACCATGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23395 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23396 AGTGTTTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23455 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+|| ||||||+||||||||||||||||+|||||||+| Sbjct: 23456 GATGTACCTATTTGTGTGTATGATCCACTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23515 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23516 GTAGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23575 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23576 CTGCATGATGCTTAG 23590 >OP020176 MAG: Betacoronavirus 1 isolate BCoV_NSW_L3, complete genome Length = 30983 E-value = 0, Score = 2110, Bitscore = 1903.84, Identities = 1133/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|||||| |||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22449 CGCTCAGATTGTAATCATGTTCTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22509 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22808 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||| ||||||++| Sbjct: 22809 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGCGAAGCTAAT 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22928 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22929 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22988 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22989 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23048 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23049 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23108 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23109 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23168 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23169 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23228 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23229 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23288 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23289 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23348 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||||| |||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23349 TTGTTATATGACTCACCATGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23408 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23409 AGTGTTTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23468 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+|| ||||||+||||||||||||||||+|||||||+| Sbjct: 23469 GATGTACCTATTTGTGTGTATGATCCACTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23528 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23529 GTAGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23588 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23589 CTGCATGATGCTTAG 23603 >ON142316 Bovine coronavirus isolate BCoV3/2021/CHN, complete genome Length = 31010 E-value = 0, Score = 2110, Bitscore = 1903.84, Identities = 1133/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| || |||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAACACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||| ||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATCAACCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23475 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23535 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >MK046001 Bovine coronavirus isolate HT316 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2109, Bitscore = 1902.94, Identities = 1132/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+||| |||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTATTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||| |||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGTTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||| ||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTGTTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAACAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||| ||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTCACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK045992 Bovine coronavirus isolate MC199 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2109, Bitscore = 1902.94, Identities = 1132/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||| ||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCCGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++ Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH203063 Bovine coronavirus strain BL104 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2109, Bitscore = 1902.94, Identities = 1132/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAC 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH203060 Bovine coronavirus strain PL83 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2109, Bitscore = 1902.94, Identities = 1132/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAC 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014867 Bovine coronavirus strain KWD2 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2109, Bitscore = 1902.94, Identities = 1132/1275 (88%), Positives = 1270/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| || Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGCAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 |||||||| |||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCCCTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+ ||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTATTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||| |||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGAACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH010256 Bovine coronavirus isolate Winter dysentery bovine coronavirus Quebec BCQ.2590 haemagglutinin gene, complete cds; spike protein S1 subunit (S1) gene, partial cds; and 4.9 kDa putative non-structural protein, 4.8 kDa putative non-structural protein, 12.7 kDa putative non-structural protein, and E sma Length = 4777 E-value = 0, Score = 2108, Bitscore = 1902.04, Identities = 1133/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||| +|||||||||||+||||||||||+++||||||||||+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTGCTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||| +||||||||+||||||||||| Sbjct: 136 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCCTAATTATTCTTATATGGACCTC 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +| +|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TTCGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||| +|||||+|||||+||+| |||+|||||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATGCCTCACCTTGTTTTTCGCGGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+|| ||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACTCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1156 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >OP037442 Bovine coronavirus isolate VDC/2022/07/E, partial genome Length = 31002 E-value = 0, Score = 2107, Bitscore = 1901.14, Identities = 1132/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22338 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22397 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||| ||||||||||||||||||||| Sbjct: 22398 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGACTGGTTTTTATTTGGTGACAGT 22457 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22458 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22517 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22518 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22577 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22578 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22637 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22638 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22697 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22698 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22757 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+| |+|||+ Sbjct: 22758 CGCAGCCTTACATTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCCACAGCC 22817 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22818 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22877 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||| +||||||+|||||||||||||||||||| Sbjct: 22878 TTTAGGGATTATTATTATAAGGTTGAAGCTGGTTTTTATTTGTCAGGTTGTGACGAGTAT 22937 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22938 ATCGTACCACTTTGTATTTTTAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 22997 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22998 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23057 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23058 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23117 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23118 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23177 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23178 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23237 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23238 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23297 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 23298 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGC 23357 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+ ||||+|||||+||+|||||+|||||||||||||||+|+|||+|||| Sbjct: 23358 TTGTTATATGACGCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGT 23417 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23418 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAACACCCCT 23477 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23478 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTT 23537 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23538 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23597 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23598 CTGCATGATGCTTAG 23612 >ON792961 Bovine coronavirus strain ABGEBB-115, complete genome Length = 31122 E-value = 0, Score = 2107, Bitscore = 1901.14, Identities = 1132/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22425 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22484 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||| |||||||||||||||||||||||| Sbjct: 22485 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGCGATTGGTTTTTATTTGGTGACAGT 22544 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22545 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22604 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22605 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22664 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22665 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22724 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22725 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22784 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22785 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22844 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22845 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22904 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+ |+||++|||||||||||++| Sbjct: 22905 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCACATATAGCTCGTGAAGCTAAT 22964 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22965 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 23024 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 23025 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23084 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23085 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23144 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23145 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23204 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23205 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23264 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23265 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23324 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23325 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23384 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23385 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23444 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23445 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23504 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23505 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23564 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23565 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23624 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23625 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23684 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23685 CTGCATGATGCTTAG 23699 >ON792956 Bovine coronavirus strain ABGEB0-122, complete genome Length = 31051 E-value = 0, Score = 2107, Bitscore = 1901.14, Identities = 1132/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22362 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22421 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22422 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22481 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22482 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22541 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22542 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22601 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22602 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22661 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22662 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22721 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22722 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22781 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22782 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22841 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22842 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTTAT 22901 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22902 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22961 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22962 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23021 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23022 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23081 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23082 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23141 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23142 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23201 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23202 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23261 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23262 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23321 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23322 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23381 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23382 TTGTTATATGACTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23441 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+| | Sbjct: 23442 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACTT 23501 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23502 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23561 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23562 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23621 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23622 CTGCATGATGCTTAG 23636 >KF906250 Dromedary camel coronavirus HKU23 strain HKU23-362F, complete genome Length = 31052 E-value = 0, Score = 2107, Bitscore = 1901.14, Identities = 1132/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22356 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22415 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22416 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22475 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22476 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22535 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22536 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22595 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 22596 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAC 22655 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22656 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22715 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22716 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22775 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| |||+|+|+|||+ Sbjct: 22776 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCTCAATCTACAGCT 22835 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +||||||||| |||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22836 CTTTGTAAATATGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22895 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+| |||||||||||||||||| Sbjct: 22896 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTATCAGGTTGTGACGAGTAT 22955 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22956 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23015 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23016 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23075 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23076 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23135 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23136 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23195 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23196 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23255 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23256 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23315 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23316 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23375 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23376 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23435 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+||+||| Sbjct: 23436 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCCACTGCTGCTGATATTAATACCCCT 23495 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23496 CATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23555 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23556 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23615 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23616 CTGCATGATGCTTAG 23630 >OP037435 Bovine coronavirus isolate VDC/2019/06/E, partial genome Length = 31008 E-value = 0, Score = 2104, Bitscore = 1898.43, Identities = 1131/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 | +|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22461 CTTTCAGATTGTAATCATGTTGTTACTACCAATCCACGTAATTATTCTTATATGGACCTA 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAC 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++||||||| |||++| Sbjct: 22821 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAGGCTAAT 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||| ||+||||||+|||||||||||||||||||| Sbjct: 22881 TTTGGGGATTATTATTATAAGGTTGAAGCCGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|| ||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACGCCTGTACAGGTTGTCGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCTGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23421 AGTGTCTGGCCTCTCTATCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23481 GATGTACCTATTTGTTTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23541 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OP037403 Bovine coronavirus isolate SDSU/2020/07/R, partial genome Length = 30956 E-value = 0, Score = 2104, Bitscore = 1898.43, Identities = 1131/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTA 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||| ||||+|||||||||||||||+|+|+|| + Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATATTTATAATGGCTCTGCACAATCTACAGTC 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTAGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTATCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGTCAACTGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGC 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+|||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGT 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23492 GATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >OP020175 MAG: Betacoronavirus 1 isolate BCoV_NSW_L1, complete genome Length = 30757 E-value = 0, Score = 2105, Bitscore = 1899.33, Identities = 1132/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22130 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22189 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22190 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22249 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|||||| |||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22250 CGCTCAGATTGTAATCATGTTCTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22309 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22310 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22369 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22370 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22429 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22430 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22489 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22490 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22549 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22550 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22609 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||| ||||||++| Sbjct: 22610 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGCGAAGCTAAT 22669 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22670 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22729 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 || |||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22730 ATTGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22789 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22790 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22849 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22850 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 22909 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22910 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 22969 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22970 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23029 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23030 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23089 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23090 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23149 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||||| |||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23150 TTGTTATATGACTCACCATGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23209 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23210 AGTGTTTGGCCTCTTTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23269 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+|| ||||||+||||||||||||||||+|||||||+| Sbjct: 23270 GATGTACCTATTTGTGTGTATGATCCACTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23329 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+ |||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23330 GTAGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23389 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23390 CTGCATGATGCTTAG 23404 >ON142319 Bovine coronavirus isolate BCoV6/2021/CHN, complete genome Length = 31043 E-value = 0, Score = 2105, Bitscore = 1899.33, Identities = 1132/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||| +|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTGCTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||| ||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATCAACCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23415 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAACACCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23475 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 +||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23535 TTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >OL840240 Bovine coronavirus isolate KCD GJ4 2021 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 2104, Bitscore = 1898.43, Identities = 1131/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAACCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||| |||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGACAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+| ||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGACTACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MW711314 Bovine coronavirus strain SWUN/NMG-15/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2105, Bitscore = 1899.33, Identities = 1132/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| |||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCATATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK045995 Bovine coronavirus isolate HT293 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2104, Bitscore = 1898.43, Identities = 1131/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+ |||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAACTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAC 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATATACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >GQ918143 Canine respiratory coronavirus strain K39 32 kDa protein, hemagglutinin-esterase, spike protein, 4.9 kDa protein, 2.7 kDa protein, 12.8 kDa protein, E protein, membrane protein, nucleocapsid protein, and internal N-gene protein genes, complete cds Length = 9686 E-value = 0, Score = 2104, Bitscore = 1898.43, Identities = 1131/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||| +++||||||||||+ Sbjct: 1017 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTTGCCTAGGTTTTGAT 1076 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1077 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1136 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1137 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 1196 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1197 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1256 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1257 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 1316 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 1317 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 1376 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1377 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 1436 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1437 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1496 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1497 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1556 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+|| |||+|||||||||||||||||||| Sbjct: 1557 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTCTATTTGTCAGGTTGTGACGAGTAT 1616 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1617 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1676 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1677 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 1736 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1737 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 1796 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1797 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 1856 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1857 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1916 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1917 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1976 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1977 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2036 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 2037 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 2096 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 2097 AGTGTCTGGCCTCTTTATTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 2156 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2157 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 2216 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +||||||||||||||||||||||||+|||||||||||||||| Sbjct: 2217 GTTGCGGTCATAATTATAGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2276 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2277 CTGCATGATGCTTAG 2291 >AH014869 Bovine coronavirus strain KWD4 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2103, Bitscore = 1897.53, Identities = 1131/1275 (88%), Positives = 1269/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCNTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||| ||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGCTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| || Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGCAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 |||||||| |||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCCCTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+ ||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTATTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||| |||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGAACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >ON792959 Bovine coronavirus strain ABGEBB-108, complete genome Length = 31035 E-value = 0, Score = 2102, Bitscore = 1896.63, Identities = 1131/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATTTTAATTGTTATTATTTAGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||| ||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCCTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCATCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23424 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >ON792955 Bovine coronavirus strain ABGEB0-116, complete genome Length = 31102 E-value = 0, Score = 2102, Bitscore = 1896.63, Identities = 1131/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22376 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22435 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22436 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22495 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22496 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22555 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22556 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22615 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22616 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22675 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22676 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22735 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22736 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22795 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22796 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22855 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22856 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22915 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22916 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22975 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22976 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23035 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23036 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23095 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23096 ATTACCACTGGTTTTGATTTTAATTGTTATTATTTAGTTCTACCCTCTGGTAATTATTTA 23155 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23156 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23215 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23216 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23275 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||| ||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23276 AACATGACGGCAGTTGCCTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23335 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23336 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23395 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23396 TTGTTATATGACTCATCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23455 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23456 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23515 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23516 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23575 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23576 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23635 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23636 CTGCATGATGCTTAG 23650 >ON792954 Bovine coronavirus strain ABGEB0-110, complete genome Length = 31052 E-value = 0, Score = 2102, Bitscore = 1896.63, Identities = 1131/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22526 AACCCTGCCTTGTGTGATTCTGGCAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22766 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCC 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22826 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 |++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22886 CTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22945 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+ ||||||||||||||||||+ Sbjct: 22946 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGAT 23005 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||| ++|||+||||| Sbjct: 23006 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACC 23065 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23066 ATTACCACTGGTTTTGATTTTAATTGTTATTATTTAGTTCTACCCTCTGGTAATTATTTA 23125 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23126 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23185 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23186 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23245 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||| ||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23246 AACATGACGGCAGTTGCCTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23305 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23306 TATGTTGGTGTTTATGATATCAATCATGGGGACGCTGGTTTTACTAGCATACTCAGTGGT 23365 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23366 TTGTTATATGACTCATCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23425 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23426 AGTATCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCT 23485 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23486 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23545 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23546 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23605 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23606 CTGCATGATGCTTAG 23620 >MF593476 Camel coronavirus HKU23 polyprotein ORF1ab (orf1ab), polyprotein ORF1a (orf1ab), NS2 protein (NS2), hemagglutinin-esterase protein (HE), spike protein (S), NS5 protein (NS5), envelope protein (E), membrane protein (M), nucleocapsid protein (N), and internal protein (N2) genes, complete cds Length = 30851 E-value = 0, Score = 2102, Bitscore = 1896.63, Identities = 1131/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22190 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22249 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22250 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22309 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22310 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22369 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22370 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22429 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 22430 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAC 22489 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22490 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22549 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22550 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22609 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| |||+|+|+|||+ Sbjct: 22610 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCTCAATCTACAGCT 22669 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +||||||||| |||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22670 CTTTGTAAATATGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22729 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||| ||+| |||||||||||||||||| Sbjct: 22730 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTCATTTATCAGGTTGTGACGAGTAT 22789 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22790 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22849 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22850 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22909 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22910 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 22969 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22970 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23029 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23030 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23089 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23090 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23149 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23150 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23209 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23210 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23269 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+||+||| Sbjct: 23270 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCCACTGCTGCTGATATTAATACCCCT 23329 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23330 CATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23389 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23390 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23449 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23450 CTGCATGATGCTTAG 23464 >KF906249 Dromedary camel coronavirus HKU23 strain HKU23-265F, complete genome Length = 31052 E-value = 0, Score = 2102, Bitscore = 1896.63, Identities = 1131/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22356 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22415 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22416 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22475 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22476 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22535 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22536 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22595 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 22596 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAC 22655 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22656 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22715 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22716 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22775 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| |||+|+|+|||+ Sbjct: 22776 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCTCAATCTATAGCT 22835 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +||||||||| |||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22836 CTTTGTAAATATGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22895 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+| |||||||||||||||||| Sbjct: 22896 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTATCAGGTTGTGACGAGTAT 22955 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22956 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23015 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23016 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23075 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23076 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23135 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23136 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23195 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23196 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23255 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23256 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23315 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23316 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23375 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23376 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23435 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+||+||| Sbjct: 23436 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCCACTGCTGCTGATATTAATACCCCT 23495 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|| ||||+| Sbjct: 23496 CATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTCTTGGGT 23555 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23556 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23615 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23616 CTGCATGATGCTTAG 23630 >MK046000 Bovine coronavirus isolate HT315 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2099, Bitscore = 1893.92, Identities = 1130/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||| ||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCCGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++| |||||||||++ Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCCCGTGAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|||||||| |||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTCACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >AH014868 Bovine coronavirus strain KWD3 hemagglutinin-esterase (HE), structural protein E (E), and structural protein M (M) genes, complete cds Length = 2423 E-value = 0, Score = 2099, Bitscore = 1893.92, Identities = 1130/1275 (88%), Positives = 1268/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+| +||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGTATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+||||||||||||||||| || Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGCAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 |||||||| |||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCCCTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+ ||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTATTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||| |||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGAACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||| | ||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGCTGTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >KT368891 Camel coronavirus HKU23 isolate camel/Riyadh/Ry123/2015, complete genome Length = 31041 E-value = 0, Score = 2097, Bitscore = 1892.12, Identities = 1130/1275 (88%), Positives = 1267/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22356 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22415 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22416 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22475 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22476 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22535 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22536 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22595 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|| Sbjct: 22596 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAC 22655 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22656 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22715 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22716 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22775 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| |||+|+|+|||+ Sbjct: 22776 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCTCAATCTACAGCT 22835 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +||||||||| |||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22836 CTTTGTAAATATGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22895 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+| |||||||||||||||||| Sbjct: 22896 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTATCAGGTTGTGACGAGTAT 22955 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22956 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23015 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23016 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23075 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23076 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23135 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23136 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23195 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23196 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23255 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23256 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23315 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23316 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23375 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23376 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23435 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+||+||| Sbjct: 23436 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCCACTGCTGCTGATATTAATACCCCT 23495 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|| ||||+| Sbjct: 23496 CATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTCTTGGGT 23555 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23556 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23615 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23616 CTGCATGATGCTTAG 23630 >GQ918141 Canine respiratory coronavirus strain K9 32 kDa protein, hemagglutinin-esterase, spike protein, 4.9 kDa protein, 2.7 kDa protein, 12.8 kDa protein, E protein, membrane protein, nucleocapsid protein, and internal N-gene protein genes, complete cds Length = 9686 E-value = 0, Score = 2097, Bitscore = 1892.12, Identities = 1130/1275 (88%), Positives = 1267/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1017 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 1076 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1077 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1136 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1137 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 1196 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1197 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1256 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 1257 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 1316 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 1317 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 1376 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+|||||| |||||+|||||||||||||||||||+||| Sbjct: 1377 ATTTGGATGCATAATAAAGGCTTGTTTTACTCTCAGGTTTATAAGAATATGGCTGTGTAT 1436 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1437 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1496 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1497 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1556 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1557 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 1616 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1617 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1676 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1677 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1736 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1737 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 1796 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1797 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1856 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1857 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 1916 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1917 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1976 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1977 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2036 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 2037 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 2096 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 2097 AGTGTCTGGCCTCTCTACTCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 2156 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2157 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATCCTTTTGGGT 2216 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+| ||||||||||||||||||||||+|||||||||||||||| Sbjct: 2217 GTTGCGGTCATAATTATTGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 2276 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2277 CTGCATGATGCTTAG 2291 >ON133844 Canine respiratory coronavirus isolate USA 5, partial genome Length = 30809 E-value = 0, Score = 2094, Bitscore = 1889.41, Identities = 1129/1275 (88%), Positives = 1267/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22133 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTTAT 22192 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22193 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22252 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+ ||| |+|||||+||||||||+|||||||||||+ Sbjct: 22253 CGTTCAGATTGTAATCATGTTGTTAAAACCCACCCCCGTAATTATTCTTATATGGACCTT 22312 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22313 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22372 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 22373 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 22432 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 22433 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 22492 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22493 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22552 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22553 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22612 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22613 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22672 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22673 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22732 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22733 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22792 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22793 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22852 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22853 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 22912 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22913 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 22972 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22973 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23032 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23033 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23092 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23093 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23152 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23153 TTGTTATATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23212 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23213 AGTGTCTGGCCTCTCTATTCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23272 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23273 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23332 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 23333 GTTGCGGTCATAATTATTGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 23392 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23393 CTGCATGATGCTTAG 23407 >MN982191 Bovine coronavirus isolate BCOV-China/SWUN/B2/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2095, Bitscore = 1890.32, Identities = 1130/1275 (88%), Positives = 1266/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095140 Bovine coronavirus strain BCOV-China/SWUN/LN1/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2093, Bitscore = 1888.51, Identities = 1130/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATTTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATCTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >KU558922 Betacoronavirus 1 isolate Buffalo coronavirus B1-24F, complete genome Length = 31039 E-value = 0, Score = 2092, Bitscore = 1887.61, Identities = 1129/1275 (88%), Positives = 1266/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++| ||||||||+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTTGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||| |||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGGGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGC 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGTTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCAGTTGCTTGCCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+ ||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGATGCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGTTATTAATACCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+||||| |+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTAGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23612 TTGCATGATGCTTAG 23626 >KM985632 Bovine coronavirus strain HLJ-14/CHN hemagglutinin protein (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||||| |||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTGCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||||||||||||||| |||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTGTTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|||||| |||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTCTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+ ||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTCTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGCAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 | |||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 AGTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||| ||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTTTTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+|| ||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACTCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++| |+||||||+|||||||+||+||||||+||||||||||||||||+|||||| +| Sbjct: 1141 GATGTATCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGAGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+| ||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MW711317 Bovine coronavirus strain SWUN/NMG-8/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+|| |||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCACATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| ||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCCCAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 ||||||||||| |||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGGTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTGAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAACACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982198 Bovine coronavirus isolate BCOV-China/SWUN/A1/2018, complete genome Length = 31018 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22534 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22834 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22953 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 22954 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 23013 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 23014 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 23073 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23074 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23133 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 23134 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 23193 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23194 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23253 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23254 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23313 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 23314 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 23373 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23374 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23433 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 23434 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 23493 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23494 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23553 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23554 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23613 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23614 CTGCATGATGCTTAG 23628 >MN982197 Bovine coronavirus isolate BCOV-China/SWUN/B10/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982196 Bovine coronavirus isolate BCOV-China/SWUN/B9/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982194 Bovine coronavirus isolate BCOV-China/SWUN/B5/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982189 Bovine coronavirus isolate BCOV-China/SWUN/A9/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095138 Bovine coronavirus strain BCOV-China/SWUN/SX1/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1129/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATTTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+| |||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTTTGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >ON133845 Canine respiratory coronavirus isolate USA 1, partial genome Length = 30807 E-value = 0, Score = 2087, Bitscore = 1883.1, Identities = 1128/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22133 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTTAT 22192 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22193 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22252 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22253 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22312 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22313 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22372 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22373 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22432 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22433 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22492 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22493 ATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 22552 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22553 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22612 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22613 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCTGCATATATAGCTCGTGAAGCTAAT 22672 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22673 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22732 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22733 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22792 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22793 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 22852 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22853 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 22912 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22913 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAACAAGCGT 22972 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22973 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23032 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23033 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23092 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23093 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23152 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 23153 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 23212 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23213 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCCCT 23272 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||| ||+|||||||+| Sbjct: 23273 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGTATTCTTTTGGGT 23332 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 23333 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 23392 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||| |||||||| Sbjct: 23393 CTGCATAATGCTTAG 23407 >MZ825082 Bovine coronavirus isolate KCD GJ2 2020 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 2087, Bitscore = 1883.1, Identities = 1128/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||+ |||||||||+|||||||||||+|| |||||||+++| ||||||||+ Sbjct: 1 ATGGTTTTGCTTCATAGATTTGTTCTAGTTAGCTGCATTATTGGTAGCCTTGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 ||| ||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 GGTCCATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+||| |||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTGTGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||| | Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAAG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095145 Bovine coronavirus strain BCOV-China/SWUN/HN1/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2088, Bitscore = 1884.0, Identities = 1129/1275 (88%), Positives = 1264/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCATAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATCTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >EU999954 Canine respiratory coronavirus strain 240/05 32 kDa protein, hemagglutinin-esterase, spike protein, 4.9 kDa protein, 2.7 kDa protein, 12.8 kDa protein, E protein, membrane protein, nucleocapsid protein, and internal N-gene protein genes, complete cds Length = 9686 E-value = 0, Score = 2087, Bitscore = 1883.1, Identities = 1128/1275 (88%), Positives = 1265/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1017 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 1076 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1077 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1136 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1137 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 1196 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1197 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1256 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 1257 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 1316 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 1317 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 1376 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1377 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 1436 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1437 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1496 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1497 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1556 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1557 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 1616 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1617 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1676 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1677 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1736 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1737 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1796 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1797 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1856 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1857 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1916 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1917 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1976 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1977 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2036 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 2037 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 2096 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 2097 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCCCT 2156 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2157 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 2216 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 2217 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 2276 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2277 CTGCATGATGCTTAG 2291 >ON142315 Bovine coronavirus isolate BCoV1/2021/CHN, complete genome Length = 31008 E-value = 0, Score = 2085, Bitscore = 1881.3, Identities = 1128/1275 (88%), Positives = 1264/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||||||||||||| |||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTCTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTACTGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23475 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23535 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >MW711319 Bovine coronavirus strain SWUN/NMG-10/2020 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2085, Bitscore = 1881.3, Identities = 1128/1275 (88%), Positives = 1264/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+ |||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCGCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||| ||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGTATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >KU558923 Betacoronavirus 1 isolate Buffalo coronavirus B1-28F, complete genome Length = 30985 E-value = 0, Score = 2085, Bitscore = 1881.3, Identities = 1128/1275 (88%), Positives = 1264/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++| ||||||||+ Sbjct: 22306 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTTGGTTTTGAT 22365 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||| |||||||||||||||||||||||| Sbjct: 22366 AACCCTCCTACCAATGTTGTCTCGCATTTAAATGGGGATTGGTTTTTATTTGGTGACAGT 22425 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22426 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 22485 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||| |||||+|||||| Sbjct: 22486 AACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAAATCCATTTTTAGG 22545 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22546 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22605 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22606 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22665 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22666 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22725 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+|||+ Sbjct: 22726 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACAGCT 22785 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22786 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22845 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22846 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22905 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22906 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22965 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22966 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23025 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23026 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23085 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23086 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGC 23145 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23146 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGTTGGAACAATGCCAGGCAGTCTGAT 23205 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23206 AACATGACGGCAGTTGCTTGCCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23265 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23266 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23325 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+ ||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23326 TTGTTATATGATGCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23385 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 23386 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGTTATTAATACCCCT 23445 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+||||||+||||||||||||||||+||||| |+| Sbjct: 23446 GATCTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTAGGT 23505 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23506 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23565 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23566 CTGCATGATGCTTAG 23580 >DQ682406 Canine respiratory coronavirus isolate 4182 32 kDa nonstructural protein (NS2), hemagglutinin-esterase protein (HE), spike protein (S), 8.8 kDa putative protein, 12.8 kDa nonstructural protein, envelope protein (E), membrane protein (M), nucleocapsid protein (N), and I protein (I) genes, complete cd Length = 9815 E-value = 0, Score = 2085, Bitscore = 1881.3, Identities = 1128/1275 (88%), Positives = 1264/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1196 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 1255 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1256 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1315 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1316 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 1375 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1376 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1435 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 1436 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 1495 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 1496 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 1555 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1556 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 1615 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1616 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 1675 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1676 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1735 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+|| |||+|||||||||||||||||||| Sbjct: 1736 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTCTATTTGTCAGGTTGTGACGAGTAT 1795 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+||||||||||||||||||||+ Sbjct: 1796 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATGAT 1855 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1856 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1915 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1916 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1975 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1976 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 2035 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 2036 AAGGATTTTACGCCTGTACAGGTTGTTGACTCGCGGTGGAACAATGCCAGGCAGTCTGAT 2095 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 2096 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 2155 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 2156 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2215 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 2216 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 2275 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+||+ || Sbjct: 2276 AGTGTCTGGCCTCTTTACTCTTATGGTAGATGTCCTACTGCTGCTGATATTAATACCTCT 2335 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2336 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 2395 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+||||||||||| |||| Sbjct: 2396 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 2455 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2456 CTGCATGATGCTTAG 2470 >MW711306 Bovine coronavirus strain SWUN/HN-KF3/2019 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2083, Bitscore = 1879.49, Identities = 1128/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGGTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||| ||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCCCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+|||||| |||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTCTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095147 Bovine coronavirus strain BCOV-China/SWUN/HN3/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2083, Bitscore = 1879.49, Identities = 1128/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCATAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+||| |+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTGTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATCTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MK095135 Bovine coronavirus strain BCOV-China/SWUN/SC1/2017 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2083, Bitscore = 1879.49, Identities = 1128/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 GTTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAGTGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACTCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATCTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >LR721767 XXX Length = 1644 E-value = 0, Score = 2083, Bitscore = 1879.49, Identities = 1128/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 289 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 348 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 349 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 408 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+|||||| |||||+||||||||+|||||||||||+ Sbjct: 409 CGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGACCTT 468 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 469 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 528 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 529 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 588 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 589 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 648 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 649 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 708 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 709 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 768 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 769 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 828 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 829 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 888 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 889 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 948 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 949 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1008 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1009 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1068 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1069 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1128 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1129 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1188 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1189 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1248 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1249 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1308 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 1309 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 1368 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 1369 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGCTATTAATACCCCT 1428 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1429 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1488 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 1489 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 1548 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1549 CTGCATGATGCTTAG 1563 >MW711305 Bovine coronavirus strain SWUN/HN-2-B12/2019 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2081, Bitscore = 1877.69, Identities = 1128/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||||| Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAG 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|| |||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAAGGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >OP037402 Bovine coronavirus isolate SDSU/2020/06/R, partial genome Length = 31007 E-value = 0, Score = 2087, Bitscore = 1883.1, Identities = 1127/1275 (88%), Positives = 1263/1275 (99%), Gaps = 12/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22351 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGTATAATTGGTAGTCTAGGTTTTGAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGCAATTATTCTTATATGGACCTA 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22531 AATCCAGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATCACTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22830 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22831 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22890 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22891 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+ |||||+||||||||||||||||||||+ Sbjct: 22951 ATCGTACCACTTTGTATTTTT------------TTGTCGAATACAAAGTATTATGATGAT 22998 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22999 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 23058 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23059 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 23118 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23119 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23178 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23179 AAGGATTTTACTCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23238 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23239 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23298 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23299 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23358 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23359 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23418 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23419 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 23478 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23479 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23538 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23539 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23598 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23599 CTGCATGATGCTTAG 23613 >MN982192 Bovine coronavirus isolate BCOV-China/SWUN/B3/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2080, Bitscore = 1876.79, Identities = 1127/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||| ||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATGGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982188 Bovine coronavirus isolate BCOV-China/SWUN/A8/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2080, Bitscore = 1876.79, Identities = 1127/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||| +||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTATTACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982187 Bovine coronavirus isolate BCOV-China/SWUN/A7/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2080, Bitscore = 1876.79, Identities = 1127/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||| +||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTATTACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982183 Bovine coronavirus isolate BCOV-China/SWUN/A3/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2080, Bitscore = 1876.79, Identities = 1127/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| ||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCCCAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >LR721756 XXX Length = 1644 E-value = 0, Score = 2079, Bitscore = 1875.89, Identities = 1127/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 289 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 348 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 349 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 408 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+|||||| |||||+||||||||+|||||||||||+ Sbjct: 409 CGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGACCTT 468 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 469 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 528 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 529 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 588 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 589 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 648 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 649 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 708 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 709 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 768 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 769 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 828 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 829 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 888 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 |||||||||||||||||+||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 889 ATCGTACCACTTTGTATNTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 948 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 949 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1008 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1009 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1068 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1069 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1128 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1129 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1188 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1189 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1248 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1249 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1308 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 1309 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 1368 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 1369 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGCTATTAATACCCCT 1428 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1429 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1488 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 1489 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 1548 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1549 CTGCATGATGCTTAG 1563 >ON133847 Canine respiratory coronavirus isolate USA 3, partial genome Length = 30807 E-value = 0, Score = 2077, Bitscore = 1874.08, Identities = 1126/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22133 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22192 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22193 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22252 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22253 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22312 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22313 AATCCAGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22372 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 22373 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 22432 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 22433 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 22492 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22493 GTTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTTTAT 22552 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22553 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22612 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22613 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22672 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22673 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22732 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22733 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22792 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22793 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 22852 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22853 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 22912 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22913 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 22972 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22973 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23032 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23033 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23092 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23093 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23152 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 23153 TTGTTATATAATTCACCTTGTTTTTCGCAGCATGGTGTTTTTAGGTATGATAATGTTAGC 23212 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+ || Sbjct: 23213 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCTCT 23272 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23273 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23332 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 23333 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 23392 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23393 CTGCATGATGCTTAG 23407 >ON133846 Canine respiratory coronavirus isolate USA 2, partial genome Length = 30807 E-value = 0, Score = 2077, Bitscore = 1874.08, Identities = 1126/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22133 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 22192 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22193 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22252 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22253 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTT 22312 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22313 AATCCAGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22372 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 22373 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 22432 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 22433 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 22492 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22493 GTTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTTTAT 22552 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22553 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22612 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22613 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22672 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22673 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22732 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22733 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22792 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22793 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 22852 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22853 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 22912 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22913 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 22972 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22973 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23032 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23033 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23092 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23093 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23152 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 23153 TTGTTATATAATTCACCTTGTTTTTCGCAGCATGGTGTTTTTAGGTATGATAATGTTAGC 23212 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+ || Sbjct: 23213 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCTCT 23272 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23273 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23332 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 23333 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 23392 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23393 CTGCATGATGCTTAG 23407 >MH249786 Canine respiratory coronavirus isolate NZ.046/16, partial genome Length = 9707 E-value = 0, Score = 2076, Bitscore = 1873.18, Identities = 1125/1275 (88%), Positives = 1264/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1149 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 1208 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 1209 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 1268 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+ Sbjct: 1269 CGTTCAGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTACTCTTATATGGACCTT 1328 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 1329 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 1388 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 1389 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 1448 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 1449 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 1508 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||| |||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 1509 GTTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 1568 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 1569 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 1628 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 1629 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 1688 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 1689 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 1748 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 || |||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 1749 ATTGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 1808 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 1809 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1868 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1869 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1928 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1929 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1988 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1989 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 2048 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 2049 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 2108 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 2109 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 2168 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 2169 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 2228 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 2229 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCCCT 2288 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 2289 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 2348 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +|+||||||||||||||||||||||+||||||||||| |||+ Sbjct: 2349 GTTGCGGTCATAATTATAGTRGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGR 2408 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 2409 CTGCATGATGCTTAG 2423 >LR721766 XXX Length = 1644 E-value = 0, Score = 2078, Bitscore = 1874.99, Identities = 1127/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 289 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 348 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 349 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 408 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+|||||| |||||+||||||||+|||||||||||+ Sbjct: 409 CGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGACCTT 468 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 469 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 528 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 529 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 588 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 589 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 648 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 649 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 708 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 709 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 768 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 769 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 828 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 829 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 888 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 889 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 948 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 949 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 1008 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 1009 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 1068 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 1069 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 1128 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 1129 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 1188 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 1189 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 1248 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 1249 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1308 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 1309 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 1368 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 1369 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGCTATTAATACCCCT 1428 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1429 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 1488 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 1489 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 1548 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1549 CTGCATGATGCTTAG 1563 >LR721663 XXX Length = 16084 E-value = 0, Score = 2078, Bitscore = 1874.99, Identities = 1127/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 7385 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 7444 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 7445 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 7504 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+|||||| |||||+||||||||+|||||||||||+ Sbjct: 7505 CGTTCAGATTGTAATCATGTTGTTAATACCAAACCCCGTAATTATTCTTATATGGACCTT 7564 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||| |+|||||| Sbjct: 7565 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCCTTTTTAGG 7624 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||||||||||||||| |||||||||||+|||||+||+||+||| Sbjct: 7625 AGTTTTCACTTTACTGATTTTTATAATTACACGGGCGAAGGTCAACAAATTATTTTTTAT 7684 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||| +||||||||||||||||||+||+||||||+||||||||| Sbjct: 7685 GAGGGTGTTAATTTTACGCCGTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 7744 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 7745 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTTTAT 7804 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 7805 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 7864 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 7865 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 7924 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 7925 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 7984 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 7985 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 8044 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 8045 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 8104 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 8105 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 8164 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 8165 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 8224 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 8225 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 8284 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 8285 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 8344 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 8345 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 8404 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+||||| |||||||||||||||+|+|||+||||| Sbjct: 8405 TTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTTTTTAGGTATGATAATGTTAGC 8464 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||+ ||||||+||+||| Sbjct: 8465 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGCTATTAATACCCCT 8524 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 8525 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 8584 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +| ||||||||||||||||||||||+||||||||||| |||| Sbjct: 8585 GTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAGG 8644 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 8645 CTGCATGATGCTTAG 8659 >MW711309 Bovine coronavirus strain SWUN/NX-YCP9/2019 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2076, Bitscore = 1873.18, Identities = 1127/1275 (88%), Positives = 1261/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||||| Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAG 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|| |||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAAGGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+|||||||||| |||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTATTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982195 Bovine coronavirus isolate BCOV-China/SWUN/B6/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2075, Bitscore = 1872.28, Identities = 1126/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||| ||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATGGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||| +||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTATTACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982193 Bovine coronavirus isolate BCOV-China/SWUN/B4/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2075, Bitscore = 1872.28, Identities = 1126/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| ||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCCCAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||| ||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATGGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982185 Bovine coronavirus isolate BCOV-China/SWUN/A5/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2075, Bitscore = 1872.28, Identities = 1126/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| ||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCCCAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||| +||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTATTACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982184 Bovine coronavirus isolate BCOV-China/SWUN/A4/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2075, Bitscore = 1872.28, Identities = 1126/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| ||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCCCAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||| +||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTATTACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MN982182 Bovine coronavirus isolate BCOV-China/SWUN/A2/2018 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2075, Bitscore = 1872.28, Identities = 1126/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTCAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||| ||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCCCAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||| ||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCATACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||| +||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTATTACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >MH203062 Bovine coronavirus strain DT97 hemagglutinin-esterase (HE) gene, complete cds Length = 1275 E-value = 0, Score = 2074, Bitscore = 1871.38, Identities = 1125/1275 (88%), Positives = 1263/1275 (99%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|| ||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAGATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAC 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAC 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTCGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAGT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGCTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTCAACGGCAAGTTCTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTACTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCGCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTATCCTTATGGAAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||| ||+||+ | |||+|||||||||||||| |+|||||||+| Sbjct: 1141 GATGTACCTATTTGTTTGTACGATCCGGTTCCAATTATTTTGCTTGGCCTTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||| ||||+||||||||||||||||||||||||+|||||| ||||||||| Sbjct: 1201 GTTGCGGTCATAACTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAACGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||| ||||||| Sbjct: 1261 CTGCATGCTGCTTAG 1275 >KX432213 Canine respiratory coronavirus strain BJ232, complete genome Length = 30868 E-value = 0, Score = 2072, Bitscore = 1869.58, Identities = 1125/1275 (88%), Positives = 1262/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+|||||||||| ++||||||||||+ Sbjct: 22285 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAACTTAGGTTTTGAT 22344 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22345 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22404 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+ |||||+|||||+||||||||+|||||||||||+ Sbjct: 22405 CGTTCAGATTGTAACCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCTT 22464 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22465 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22524 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22525 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22584 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22585 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCAGTTCTGGTAGTAATGAT 22644 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22645 GTTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22704 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22705 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22764 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +||||||| |+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22765 CTTTGTAAGTCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22824 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22825 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22884 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22885 ATCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22944 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22945 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 23004 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23005 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 23064 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23065 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23124 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23125 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAC 23184 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 23185 AACATGACGGCGGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23244 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23245 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23304 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23305 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23364 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23365 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCCCT 23424 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|| +||||||+|||||||+||+||||||+|||||||||||| |||+|||||||+| Sbjct: 23425 GATGTACATATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGCCATTCTTTTGGGT 23484 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+| |||||||||| |||||||||||+||||||||||| |||| Sbjct: 23485 GTTGCGGTCATAATTATTGTGGTTTTGTTGTCATATTTTATGGTGGATAATGGTATTAGG 23544 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23545 CTGCATGATGCTTAG 23559 >MW711308 Bovine coronavirus strain SWUN/NX-YCP7/2019 hemagglutinin-esterase gene, complete cds Length = 1275 E-value = 0, Score = 2071, Bitscore = 1868.67, Identities = 1126/1275 (88%), Positives = 1260/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++|||||||||| Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAG 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|| |||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAAGGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||| | Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCTT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||++|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+| Sbjct: 1141 TATGTACCTATTTGTGTGTATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+|||||||||| |||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTATTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1261 CTGCATGATGCTTAG 1275 >ON133848 Canine respiratory coronavirus isolate USA 4, partial genome Length = 30807 E-value = 0, Score = 2053, Bitscore = 1852.44, Identities = 1121/1275 (87%), Positives = 1259/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+|||||||||| ++||||||||||+ Sbjct: 22133 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAACTTAGGTTTTGAT 22192 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22193 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22252 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+ |||||+|||||+||||||||+|||||||||||+ Sbjct: 22253 CGTTCAGATTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCTT 22312 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22313 AATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22372 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22373 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 22432 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22433 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22492 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+|||||| |||||+|||||||||||||||||||+||| Sbjct: 22493 ATTTGGATGCATAATAAAGGCTTGTTTTACTCTCAGGTTTATAAGAATATGGCTGTGTAT 22552 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22553 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 22612 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22613 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 22672 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22673 TTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 22732 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 +|||||||||||||||| ||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22733 NTCGTACCACTTTGTATCTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22792 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 22793 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAACC 22852 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22853 ATTAACACTGGTTTTGATTTTAATTGTCATTATTTACTTTTACCCTCTGGTAATTATTTA 22912 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 22913 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 22972 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22973 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAC 23032 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|| ||||||||||||||||||||||||||+||+ Sbjct: 23033 AACATGACGGCGGTTGCTTGTCAACTCCCTTACTGTTATTTTCGTAATTCTACTACCAAT 23092 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23093 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23152 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23153 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23212 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 23213 AGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACTGCTGCTGATATTAATACCCCT 23272 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|| +||||||+|||||||+||+||||||+|||||||||||| |||+|||||||+| Sbjct: 23273 GATGTACATATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGCCATTCTTTTGGGT 23332 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+| ||||||||| |||||||||||+||||||||||| |||| Sbjct: 23333 GTTGCGGTCATAATTATTGTGTTTTTGTTGTCATATTTTATGGTGGATAATGGTATTAGG 23392 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23393 TTGCATGATGCTTAG 23407 >MH810163 Yak coronavirus strain YAK/HY24/CH/2017, complete genome Length = 31032 E-value = 0, Score = 2047, Bitscore = 1847.03, Identities = 1120/1275 (87%), Positives = 1257/1275 (98%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22352 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||| |||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGAATTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+ ||||+||||||||+|||||||| ||+ Sbjct: 22472 CGTTCAGATTGTAATCATGTTGTTACTACCAATGCCCGTAATTATTCTTATATGGAGCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22532 AATCCTGCCTTGTGTAGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+| +||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTACTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+ |||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22652 GAGGGTGTTAAATTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||| ||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22772 CGCAGTCTTACTTTTGATACTGTACCATATGTTTACAATGGCTCTGCACAATCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22832 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAGT 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+||||||| |+||||||+|||||||||||||||||||| Sbjct: 22892 GTGGGTGATTATTATTATAAGGCTGAAGCTCATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+|||||| +|||+||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTGTACTGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||| ||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACGCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+| +||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTGGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+ |||||||+||| |+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCACTTGCTTGTCAAGCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||| | ||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGATATTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||| |++||||||+| +||| Sbjct: 23432 AGTGTCTGGCCTCTCTACTCTTATGGCAGATGCCCTACTGCTGATGATATTAATAGCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||| ||+|||||||+| Sbjct: 23492 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGTATTCTTTTGGGT 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23552 GTTGCGGTCATAATTATTCTAGTTTTGTTGTTATATTTTATGGAGGATAATGGTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >M76373 Human coronavirus OC43 hemagglutinin-esterase (HE) gene, complete cds Length = 1304 E-value = 0, Score = 2003, Bitscore = 1807.36, Identities = 1112/1275 (87%), Positives = 1247/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 16 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 75 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 76 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 135 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 136 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 195 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 196 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 255 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 256 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 315 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 316 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 375 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 376 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 435 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 436 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCT 495 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 496 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 555 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 556 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 615 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 616 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 675 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 676 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 735 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 736 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 795 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 796 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 855 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 856 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 915 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 916 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 975 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 976 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 1035 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1036 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 1095 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1096 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATAACCCT 1155 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1156 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1215 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1216 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1275 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1276 CTGCATGATGCTTAG 1290 >NC_006213 Human coronavirus OC43 strain ATCC VR-759, complete genome Length = 30741 E-value = 0, Score = 1976, Bitscore = 1783.01, Identities = 1107/1275 (86%), Positives = 1241/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22534 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22834 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22953 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22954 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23013 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23014 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23073 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23074 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23133 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23134 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23193 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23194 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23253 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23254 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23313 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23314 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23373 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23374 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23433 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23434 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23493 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23494 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23553 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23554 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23613 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23614 CTGCATGATGCTTAG 23628 >AY585229 Human coronavirus OC43 serotype OC43-Paris, complete genome Length = 30744 E-value = 0, Score = 1976, Bitscore = 1783.01, Identities = 1107/1275 (86%), Positives = 1241/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22534 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22834 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22953 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22954 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23013 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23014 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23073 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23074 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23133 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23134 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23193 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23194 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23253 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23254 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23313 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23314 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23373 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23374 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23433 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23434 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23493 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23494 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23553 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23554 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23613 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23614 CTGCATGATGCTTAG 23628 >AY391777 Human coronavirus OC43, complete genome Length = 30738 E-value = 0, Score = 1976, Bitscore = 1783.01, Identities = 1107/1275 (86%), Positives = 1241/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22535 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22835 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22954 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22955 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23014 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23015 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23074 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23075 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23134 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23135 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23194 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23195 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23254 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23255 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23314 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23315 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23374 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23375 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23434 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23435 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23494 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23495 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23554 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23555 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23614 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23615 CTGCATGATGCTTAG 23629 >ON376725 Human coronavirus OC43 strain MA-P9, complete genome Length = 30746 E-value = 0, Score = 1971, Bitscore = 1778.51, Identities = 1106/1275 (86%), Positives = 1240/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22531 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22830 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22831 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22890 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22891 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +| |+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTCATCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >ON376724 Human coronavirus OC43 strain WT-P0, complete genome Length = 30746 E-value = 0, Score = 1971, Bitscore = 1778.51, Identities = 1106/1275 (86%), Positives = 1240/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22531 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22830 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22831 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22890 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22891 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +| |+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTCATCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >OK662397 Human coronavirus OC43 strain TKU-2021A, complete genome Length = 30731 E-value = 0, Score = 1971, Bitscore = 1778.51, Identities = 1106/1275 (86%), Positives = 1240/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAC 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22524 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22824 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23424 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +| |+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23484 GATTCATCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23544 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >KF530079 Human coronavirus OC43 strain OC43/human/USA/913-29/1991, complete genome Length = 30581 E-value = 0, Score = 1971, Bitscore = 1778.51, Identities = 1106/1275 (86%), Positives = 1240/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >MN514963 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU23/camel/Morocco/CAC2586/2016, complete genome Length = 31062 E-value = 0, Score = 1967, Bitscore = 1774.9, Identities = 1104/1275 (86%), Positives = 1241/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||| ||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATACTTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTT 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22522 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||| ||+|||||+||+||+|| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGGCAACAAATTATTTTCTAC 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATACATAGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||| ||||||||||||||| Sbjct: 22882 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCCGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACT 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||| ||||+||||||||||| ||||||+||+||||||||||+ |||||| | Sbjct: 23062 ATTACCACTGGTCTTGATTTTAATTGTCAATATTTAGTTTTACCCTCTGGTTATTATTCA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||| ||+||||| |||||||| || ||+||+||||| ||||||||||++|||||| Sbjct: 23122 GCCATTTCTAATGAGCTGTTGTTAACAGTGCCTACGAAAGCCATCTGTCTTAGCAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 || ||||||||+|||||||| || |||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23182 AAAGATTTTACGCCTGTACAAGTGGTTGACTCTCGTTGGAACAATGCCAGGCCTTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+ |||| ||+|||| +||||||||||||||| | || |||||| |+||+ Sbjct: 23242 AACATGACGGCAATTGCATGTCAACTGCCGTACTGTTATTTTAGGAACTCTACTTCCAAC 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||| |||||||| | || ||+|||||+|||||||| |||||||||||+|||||| Sbjct: 23302 TATGTTGGTATTTATGATGTTAACCATGGGGATGCTGGTTTCACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+| +||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTCTATCCTTATGGCATGTGTCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| || |||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCTGTTATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23602 TTGCATGATGCTTAG 23616 >KF530094 Human coronavirus OC43 strain OC43/human/USA/912-36/1991, complete genome Length = 30581 E-value = 0, Score = 1966, Bitscore = 1774.0, Identities = 1105/1275 (86%), Positives = 1239/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530089 Human coronavirus OC43 strain OC43/human/USA/911-66/1991, complete genome Length = 30611 E-value = 0, Score = 1966, Bitscore = 1774.0, Identities = 1105/1275 (86%), Positives = 1239/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >KF530082 Human coronavirus OC43 strain OC43/human/USA/912-11/1991, complete genome Length = 30581 E-value = 0, Score = 1966, Bitscore = 1774.0, Identities = 1105/1275 (86%), Positives = 1239/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530093 Human coronavirus OC43 strain OC43/human/USA/832-27/1983, partial genome Length = 30483 E-value = 0, Score = 1962, Bitscore = 1770.39, Identities = 1105/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22241 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22300 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22301 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22360 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22361 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22420 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22421 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22480 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22481 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22540 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22541 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22600 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22601 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22660 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22661 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22720 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22721 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22780 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22781 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22840 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22841 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22900 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22901 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 22960 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22961 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23020 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23021 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23080 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23081 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23140 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23141 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23200 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23201 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23260 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23261 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23320 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23321 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23380 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23381 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23440 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23441 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23500 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23501 CTGCATGATGCTTAG 23515 >MN514965 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU23/camel/Nigeria/NV1092/2015, complete genome Length = 30799 E-value = 0, Score = 1962, Bitscore = 1770.39, Identities = 1105/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+|||||| |||+++||||||||||+ Sbjct: 22350 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTAGTAGCCTAGGTTTTGAT 22409 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||||||||||||| |||||||||||||| Sbjct: 22410 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTCTATTTGGTGACAGT 22469 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+||||| |||||+|||||||| |+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22470 CGTTCAGACTGTAATCATGTTGTCACTACCAATCCTCGTAATTATTCTTATATGGACCTT 22529 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| |||||| | |||||| Sbjct: 22530 AACCCAGCCCTATGTGATTCAGGTAAAATTTCTTCGAAAGCTGGTAACTCCTTGTTTAGG 22589 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||| ||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22590 AGTTTCCACTTCACGGATTTTTACAATTACACAGGTGAAGGTCAACAAATTATATTTTAT 22649 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+|||||| || +||||||||||||||||||+ |+||||||+||||||||| Sbjct: 22650 GAGGGTGTTAATTTTACTCCATATCATGCCTTTAAATGCACTAGTTCTGGTAGTAATGAT 22709 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22710 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22769 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+ ||+ Sbjct: 22770 CGCAGTCTTACTTTTGTTAGTGTACCATATGTTTACAATGGCTCTGCACAAGTCACTGCT 22829 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22830 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCCGCCTATATTGCTCGTGAAGCTAAT 22889 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22890 GTGGGGGATTATTATTATAAGGCTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 22949 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22950 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23009 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||| ||||||+| ||||++||| | || Sbjct: 23010 AGTCAATATTATTTTAATAAAGATACCGGTGTTATCTATGGTCTTAATTCCACTAAGACT 23069 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||| || |||+||+||||||||||+||||||||| Sbjct: 23070 ATTACCACTGGTTTTGATTTTAATTGTCAATACTTAGTTCTACCCTCTGGTAATTATTTA 23129 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23130 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAGTAAGCGT 23189 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23190 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGATGGAACAATGCCAGGCTTTCTGAT 23249 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23250 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23309 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23310 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23369 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23370 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23429 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+||+||| Sbjct: 23430 AGTGTCTGGCCTCTCTATCCCTATGGTAGGTGTCCTACTGCTGCTGATATTAATACCCCT 23489 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23490 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23549 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23550 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23609 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23610 TTGCATGATGCTTAG 23624 >MN514964 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU23/camel/Nigeria/NV1010/2015, complete genome Length = 30780 E-value = 0, Score = 1962, Bitscore = 1770.39, Identities = 1105/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+|||||| |||+++||||||||||+ Sbjct: 22337 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTAGTAGCCTAGGTTTTGAT 22396 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||||||||||||| |||||||||||||| Sbjct: 22397 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTCTATTTGGTGACAGT 22456 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+||||| |||||+|||||||| |+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22457 CGTTCAGACTGTAATCATGTTGTCACTACCAATCCTCGTAATTATTCTTATATGGACCTT 22516 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| |||||| | |||||| Sbjct: 22517 AACCCAGCCCTATGTGATTCAGGTAAAATTTCTTCGAAAGCTGGTAACTCCTTGTTTAGG 22576 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||| ||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22577 AGTTTCCACTTCACGGATTTTTACAATTACACAGGTGAAGGTCAACAAATTATATTTTAT 22636 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+|||||| || +||||||||||||||||||+ |+||||||+||||||||| Sbjct: 22637 GAGGGTGTTAATTTTACTCCATATCATGCCTTTAAATGCACTAGTTCTGGTAGTAATGAT 22696 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22697 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22756 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+ ||+ Sbjct: 22757 CGCAGTCTTACTTTTGTTAGTGTACCATATGTTTACAATGGCTCTGCACAAGTCACTGCT 22816 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22817 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCCGCCTATATTGCTCGTGAAGCTAAT 22876 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22877 GTGGGGGATTATTATTATAAGGCTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 22936 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22937 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22996 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||| ||||||+| ||||++||| | || Sbjct: 22997 AGTCAATATTATTTTAATAAAGATACCGGTGTTATCTATGGTCTTAATTCCACTAAGACT 23056 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||| || |||+||+||||||||||+||||||||| Sbjct: 23057 ATTACCACTGGTTTTGATTTTAATTGTCAATACTTAGTTCTACCCTCTGGTAATTATTTA 23116 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23117 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAGTAAGCGT 23176 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23177 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGATGGAACAATGCCAGGCTTTCTGAT 23236 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23237 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23296 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23297 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23356 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23357 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23416 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+||+||| Sbjct: 23417 AGTGTCTGGCCTCTCTATCCCTATGGTAGGTGTCCTACTGCTGCTGATATTAATACCCCT 23476 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23477 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23536 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23537 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23596 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23597 TTGCATGATGCTTAG 23611 >KF530091 Human coronavirus OC43 strain OC43/human/USA/911-58/1991, complete genome Length = 30606 E-value = 0, Score = 1959, Bitscore = 1767.69, Identities = 1104/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTTTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||+ ||||||+| +||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGTTATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >KF530076 Human coronavirus OC43 strain OC43/human/USA/911-11/1991, complete genome Length = 30606 E-value = 0, Score = 1959, Bitscore = 1767.69, Identities = 1104/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22529 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22829 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTTTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||+ ||||||+| +||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGTTATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >KF530071 Human coronavirus OC43 strain OC43/human/USA/925-1/1992, complete genome Length = 30578 E-value = 0, Score = 1959, Bitscore = 1767.69, Identities = 1104/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTTTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||+ ||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGTTATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530086 Human coronavirus OC43 strain OC43/human/USA/872-5/1987, complete genome Length = 30577 E-value = 0, Score = 1957, Bitscore = 1765.88, Identities = 1104/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+| ||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGGTTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530085 Human coronavirus OC43 strain OC43/human/USA/871-25/1987, complete genome Length = 30569 E-value = 0, Score = 1957, Bitscore = 1765.88, Identities = 1104/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22327 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22386 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22387 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22446 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||| ||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22447 CGTTCAGATTGCAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22506 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22507 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22566 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22567 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22626 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22627 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22686 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22687 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22746 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22747 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22806 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22807 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22866 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22867 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22926 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22927 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22986 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22987 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23046 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23047 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23106 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23107 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23166 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23167 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23226 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23227 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23286 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23287 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23346 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23347 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23406 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23407 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23466 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23467 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23526 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23527 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23586 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23587 CTGCATGATGCTTAG 23601 >KF530077 Human coronavirus OC43 strain OC43/human/USA/873-16/1987, complete genome Length = 30577 E-value = 0, Score = 1957, Bitscore = 1765.88, Identities = 1104/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGCAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+| ||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGGTTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATACACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530096 Human coronavirus OC43 strain OC43/human/USA/911-38/1991, complete genome Length = 30589 E-value = 0, Score = 1956, Bitscore = 1764.98, Identities = 1103/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22332 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22391 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22392 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22451 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22452 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22511 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22512 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22571 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22572 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22631 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22632 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22691 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22692 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22751 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22752 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22811 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22812 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22871 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22872 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+|||| Sbjct: 23352 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGT 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||| +||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCACTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >KF530088 Human coronavirus OC43 strain OC43/human/USA/901-54/1990, complete genome Length = 30578 E-value = 0, Score = 1957, Bitscore = 1765.88, Identities = 1104/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTTTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+|| |||||||||+ ||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCCTATGGTAGATGTCCCACTGCTGCTGTTATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530067 Human coronavirus OC43 strain OC43/human/USA/912-10/1991, complete genome Length = 30608 E-value = 0, Score = 1956, Bitscore = 1764.98, Identities = 1103/1275 (86%), Positives = 1237/1275 (97%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22348 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22407 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22408 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22467 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22468 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22527 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22528 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22587 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22588 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22647 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22648 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22707 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22708 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22767 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22768 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22827 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22828 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22887 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22888 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22947 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22948 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23007 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23008 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23067 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23068 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23127 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23128 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23187 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23188 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23247 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23248 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23307 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23308 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23367 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23368 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23427 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23428 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23487 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23488 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23547 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23548 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23607 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||| |||||| Sbjct: 23608 CTGCATGACGCTTAG 23622 >MN514967 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU23/camel/Nigeria/NV1385/2016, complete genome Length = 30799 E-value = 0, Score = 1957, Bitscore = 1765.88, Identities = 1104/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+|||||| |||+++||||||||||+ Sbjct: 22350 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTAGTAGCCTAGGTTTTGAT 22409 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||||||||||||| |||||||||||||| Sbjct: 22410 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTCTATTTGGTGACAGT 22469 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+||||| |||||+|||||||| |+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22470 CGTTCAGACTGTAATCATGTTGTCACTACCAATCCTCGTAATTATTCTTATATGGACCTT 22529 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| |||||| | |||||| Sbjct: 22530 AACCCAGCCCTATGTGATTCAGGTAAAATTTCTTCGAAAGCTGGTAACTCCTTGTTTAGG 22589 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||| ||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22590 AGTTTCCACTTCACGGATTTTTACAATTACACAGGTGAAGGTCAACAAATTATATTTTAT 22649 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+|||||| || +||||||||||||||||||+ |+||||||+||||||||| Sbjct: 22650 GAGGGTGTTAATTTTACTCCATATCATGCCTTTAAATGCACTAGTTCTGGTAGTAATGAT 22709 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22710 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22769 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+ ||+ Sbjct: 22770 CGCAGTCTTACTTTTGTTAGTGTACCATATGTTTACAATGGCTCTGCACAAGTCACTGCT 22829 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22830 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCCGCCTATATTGCTCGTGAAGCTAAT 22889 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22890 GTGGGGGATTATTATTATAAGGCTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 22949 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22950 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23009 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||| ||||||+| ||||++||| | || Sbjct: 23010 AGTCAATATTATTTTAATAAAGATACCGGTGTTATCTATGGTCTTAATTCCACTAAGACT 23069 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||| || |||+||+||||||||||+||||||||| Sbjct: 23070 ATTACCACTGGTTTTGATTTTAATTGTCAATACTTAGTTCTACCCTCTGGTAATTATTTA 23129 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23130 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAGTAAGCGT 23189 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23190 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGATGGAACAATGCCAGGCTTTCTGAT 23249 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23250 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23309 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23310 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23369 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+ ||||+|||||||||||||||+|+|||+||||| Sbjct: 23370 TTGTTATATGATTCACCTTGTTTTTCAGAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23429 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+||+||| Sbjct: 23430 AGTGTCTGGCCTCTCTATCCCTATGGTAGGTGTCCTACTGCTGCTGATATTAATACCCCT 23489 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23490 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23549 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23550 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23609 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23610 TTGCATGATGCTTAG 23624 >MN514962 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU23/camel/Ethiopia/CAC1019/2015, complete genome Length = 31021 E-value = 0, Score = 1954, Bitscore = 1763.18, Identities = 1103/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22344 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||||||||||||||||||||| |||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTCTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATGTTGTTACTACCAATCCTCGTAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| |+| |||++||+ ||+||||| || +| ||||||||||||||| | |||||| Sbjct: 22524 AACCCAGTCCTATGTGATTCAGGTAAAATTTCTTCGAAAGCTGGCAACTCCTTGTTTAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||| ||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22584 AGTTTCCACTTCACGGATTTTTACAATTACACAGGTGAAGGTCAACAAATTATATTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+|||||| || +||||||||||||||||||+ |+||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACTCCATATCATGCCTTTAAATGCACTAGTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+ | + Sbjct: 22764 CGCAGTCTTACTTTTGTTAGTGTACCATATGTTTACAATGGCTCTGCACAAGTCACTGTT 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22824 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCCGCCTATATTGCTCGTGAAGCTAAT 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||| | +|||||||||||||||||||| Sbjct: 22884 GTGGGGGATTATTATTATAAGGCTGAAGCTGACTTTCACTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||| ||||||+| ||||++||| | || Sbjct: 23004 AGTCAATATTATTTTAATAAAGATACCGGTGTTATCTATGGTCTTAATTCCACTAAGACT 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||| ||||||| +||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATTTTAATTGTTATTATTTGGTTCTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGGTTTTACGCCTGTACAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||| ||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCAGTTGCGTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||| ||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTGCTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+| | Sbjct: 23424 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACTT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23484 GATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23544 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >JN874560 Rabbit coronavirus HKU14 strain HKU14-3, complete genome Length = 31116 E-value = 0, Score = 1954, Bitscore = 1763.18, Identities = 1103/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||| | |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22513 ATGTTTTTGCTTCCTAGATATATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22572 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22573 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22632 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||| ||+|| ||+||||||||+|||||||||||+ Sbjct: 22633 CGTTCAGATTGTAATCATGTTGTTAATACTAATCCTCGTAATTATTCTTATATGGACCTT 22692 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| ||||| | |||||| Sbjct: 22693 AACCCAGCCCTATGTGATTTAGGTAAAATCTCTTCGAAAGCTGGTAACTCTTTGTTTAGG 22752 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||||||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22753 AGTTTCCACTTCACGGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATATTCTAT 22812 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||| |||+|||| |||||||||||||+||+|| |||+||||||||| Sbjct: 22813 GAGGGTGTTAATTTTAATCCTTATCACGCCTTTAAATGCACCAGTTTTGGTAGTAATGAT 22872 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22873 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22932 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||| ||||||||| |+|+|||+ Sbjct: 22933 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGTTCTGCACAAGCTACAGCT 22992 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++|||||||||||++| Sbjct: 22993 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAATCCTGCCTATATAGCTCGTGAAGCTAAT 23052 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+|||||||| |||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 23053 TTGGGGGATTATTACTATAAGGTTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 23112 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+||||||||||||||||||||+ Sbjct: 23113 ATCGTACCACTTTGTATTTTTAATGGTAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23172 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+| ||||++|||+| || Sbjct: 23173 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTTAATTCTACTGAGACT 23232 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23233 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23292 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+||||||||||||||||++|||||| Sbjct: 23293 GCCATTTCAAATGAGCTATTATTAACTGTTCCCACGAAAGCAATCTGTCTTAGTAAGCGT 23352 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| || || ||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23353 AAGGATTTTACGCCTGTACAAGTGGTAGATTCTCGTTGGAACAATGCCAGGCCTTCTGAT 23412 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23413 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23472 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23473 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23532 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23533 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23592 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+||+| | Sbjct: 23593 AGTGTCTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTGATATTAATACCCTT 23652 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23653 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23712 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23713 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23772 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23773 CTGCATGATGCTTAG 23787 >KF530097 Human coronavirus OC43 strain OC43/human/USA/9211-43/1992, complete genome Length = 30577 E-value = 0, Score = 1952, Bitscore = 1761.37, Identities = 1103/1275 (86%), Positives = 1235/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530087 Human coronavirus OC43 strain OC43/human/USA/873-6/1987, complete genome Length = 30577 E-value = 0, Score = 1952, Bitscore = 1761.37, Identities = 1103/1275 (86%), Positives = 1235/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCC 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGTAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+|||||| |+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTTTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530083 Human coronavirus OC43 strain OC43/human/USA/873-19/1987, complete genome Length = 30577 E-value = 0, Score = 1952, Bitscore = 1761.37, Identities = 1103/1275 (86%), Positives = 1235/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+| ||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGGTTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||| ||||||||||| Sbjct: 23595 CTGTATGATGCTTAG 23609 >KF530074 Human coronavirus OC43 strain OC43/human/USA/9212-33/1992, complete genome Length = 30590 E-value = 0, Score = 1952, Bitscore = 1761.37, Identities = 1103/1275 (86%), Positives = 1235/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22332 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22391 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22392 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22451 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22452 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22511 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22512 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22571 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22572 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22631 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22632 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22691 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22692 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22751 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22752 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22811 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22812 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22871 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22872 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >KF530060 Human coronavirus OC43 strain OC43/human/USA/851-15/1985, complete genome Length = 30577 E-value = 0, Score = 1952, Bitscore = 1761.37, Identities = 1103/1275 (86%), Positives = 1235/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++ +|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCTTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+ |+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATTCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530095 Human coronavirus OC43 strain OC43/human/USA/912-6/1991, complete genome Length = 30602 E-value = 0, Score = 1951, Bitscore = 1760.47, Identities = 1102/1275 (86%), Positives = 1236/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22525 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22825 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22944 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22945 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23004 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||| ||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23005 AGTCAATATTTTTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23064 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23065 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23124 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23125 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23184 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23185 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23244 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23245 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23304 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23305 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23364 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+|||| Sbjct: 23365 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGT 23424 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||| +||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23425 AGTGTCTGGCCTCACTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23484 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23485 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23544 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23545 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23604 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23605 CTGCATGATGCTTAG 23619 >KF530090 Human coronavirus OC43 strain OC43/human/USA/931-85/1993, complete genome Length = 30577 E-value = 0, Score = 1947, Bitscore = 1756.87, Identities = 1102/1275 (86%), Positives = 1234/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||| ||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTACTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530073 Human coronavirus OC43 strain OC43/human/USA/8912-37/1989, complete genome Length = 30577 E-value = 0, Score = 1947, Bitscore = 1756.87, Identities = 1102/1275 (86%), Positives = 1234/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||| +||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAACCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||| ||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATCATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530066 Human coronavirus OC43 strain OC43/human/USA/901-33/1990, complete genome Length = 30564 E-value = 0, Score = 1947, Bitscore = 1756.87, Identities = 1102/1275 (86%), Positives = 1234/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22322 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22381 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22382 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22441 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22442 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22501 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22502 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22561 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22562 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22621 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22622 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22681 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22682 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22741 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22742 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22801 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||| +||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22802 TTTTGTAAACCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22861 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||| ||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22862 TCTGGGGATTATTATCATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22921 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22922 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22981 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22982 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23041 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23042 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23101 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23102 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23161 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23162 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23221 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23222 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23281 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23282 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23341 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23342 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23401 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23402 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23461 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23462 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23521 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23522 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23581 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23582 CTGCATGATGCTTAG 23596 >KF530065 Human coronavirus OC43 strain OC43/human/USA/901-41/1990, complete genome Length = 30577 E-value = 0, Score = 1947, Bitscore = 1756.87, Identities = 1102/1275 (86%), Positives = 1234/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||| +||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAACCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||| ||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATCATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530061 Human coronavirus OC43 strain OC43/human/USA/901-43/1990, complete genome Length = 30577 E-value = 0, Score = 1947, Bitscore = 1756.87, Identities = 1102/1275 (86%), Positives = 1234/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||| +||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAACCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||| ||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATCATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTGTTATATAATGCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >NC_017083 Rabbit coronavirus HKU14, complete genome Length = 31100 E-value = 0, Score = 1945, Bitscore = 1755.06, Identities = 1102/1275 (86%), Positives = 1233/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||| | |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22504 ATGTTTTTGCTTCCTAGATATATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22563 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22564 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22623 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||| ||+|| ||+||||||||+|||||||||||+ Sbjct: 22624 CGTTCAGATTGTAATCATGTTGTTAATACTAATCCTCGTAATTATTCTTATATGGACCTT 22683 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| ||||| | |||||| Sbjct: 22684 AACCCAGCCCTATGTGATTCAGGTAAAATCTCTTCGAAAGCTGGTAACTCTTTGTTTAGG 22743 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||||||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22744 AGTTTCCACTTCACGGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATATTCTAT 22803 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||| |||+|||| |||||||||||||+||+|| |||+||||||||| Sbjct: 22804 GAGGGTGTTAATTTTAATCCTTATCACGCCTTTAAATGCACCAGTTTTGGTAGTAATGAT 22863 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22864 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22923 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||| ||||||||| | |+|||+ Sbjct: 22924 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGTTCTGCACAAGCCACAGCT 22983 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++|||||||||||++| Sbjct: 22984 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAATCCTGCCTATATAGCTCGTGAAGCTAAT 23043 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+|||||||| |||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 23044 TTGGGGGATTATTACTATAAGGTTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 23103 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+||||||||||||||||||||+ Sbjct: 23104 ATCGTACCACTTTGTATTTTTAATGGTAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23163 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+| ||||++|||+| || Sbjct: 23164 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTTAATTCTACTGAGACT 23223 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23224 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23283 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+||||||||||||||||++|||||| Sbjct: 23284 GCCATTTCAAATGAGCTATTATTAACTGTTCCCACGAAAGCAATCTGTCTTAGTAAGCGT 23343 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| || || ||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23344 AAGGATTTTACGCCTGTACAAGTGGTAGATTCTCGTTGGAACAATGCCAGGCCTTCTGAT 23403 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23404 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23463 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23464 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23523 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23524 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23583 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|| || ||+||+||||||||||||++||||||+|| ||| Sbjct: 23584 AGTGTCTGGCCTCTTTACCCTTACGGTAGATGTCCTACTGCTGCTGATATTAATACTCCT 23643 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||| +| Sbjct: 23644 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGTGT 23703 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23704 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23763 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23764 CTGCATGATGCTTAG 23778 >KF530075 Human coronavirus OC43 strain OC43/human/USA/953-23/1995, complete genome Length = 30577 E-value = 0, Score = 1942, Bitscore = 1752.36, Identities = 1101/1275 (86%), Positives = 1233/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATCTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAACATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >JN874561 Rabbit coronavirus HKU14 strain HKU14-8, complete genome Length = 31096 E-value = 0, Score = 1939, Bitscore = 1749.65, Identities = 1100/1275 (86%), Positives = 1233/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||| | |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22500 ATGTTTTTGCTTCCTAGATATATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22559 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22560 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22619 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||| ||+|| ||+||||||||+|||||||||||+ Sbjct: 22620 CGTTCAGATTGTAATCATGTTGTTAATACTAATCCTCGTAATTATTCTTATATGGACCTT 22679 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| ||||| | || ||| Sbjct: 22680 AACCCAGCCCTATGTGATTCAGGTAAAATCTCTTCGAAAGCTGGTAACTCTTTGTTCAGG 22739 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||||||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22740 AGTTTCCACTTCACGGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATATTCTAT 22799 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||| |||+|||| ||||||||||| |+||+|| |||+||||||||| Sbjct: 22800 GAGGGTGTTAATTTTAATCCTTATCACGCCTTTAAATGTACCAGTTTTGGTAGTAATGAT 22859 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22860 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22919 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||| ||||||||| |+|+|||+ Sbjct: 22920 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGTTCTGCACAAGCTACAGCT 22979 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++|||||||||||++| Sbjct: 22980 CTTTGTAAATCTGGTAGTTTAGTCCTTAATAATCCTGCCTATATAGCTCGTGAAGCTAAT 23039 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+|||||||| |||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 23040 TTGGGGGATTATTACTATAAGGTTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 23099 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+||||||||||||||||||||+ Sbjct: 23100 ATCGTACCACTTTGTATTTTTAATGGTAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23159 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+| ||||++|||+| || Sbjct: 23160 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTTAATTCTACTGAGACT 23219 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||| ||||||||||||+||+||||||||||+||||||||| Sbjct: 23220 ATTACCACTGGTTTTGATTTTAACTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23279 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+||||||||||||||||++| |||| Sbjct: 23280 GCCATTTCAAATGAGCTATTATTAACTGTTCCCACGAAAGCAATCTGTCTTAGTAGGCGT 23339 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| || || ||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23340 AAGGATTTTACGCCTGTACAAGTGGTAGATTCTCGTTGGAACAATGCCAGGCCTTCTGAT 23399 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23400 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23459 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23460 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23519 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23520 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23579 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+||||||||||||++||||||+||+||| Sbjct: 23580 AGTGTCTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTGATATTAATACCCCT 23639 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23640 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23699 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23700 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23759 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23760 CTGCATGATGCTTAG 23774 >KF530078 Human coronavirus OC43 strain OC43/human/USA/9612-29/1996, complete genome Length = 30568 E-value = 0, Score = 1937, Bitscore = 1747.85, Identities = 1100/1275 (86%), Positives = 1232/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22322 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22381 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22382 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22441 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22442 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22501 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22502 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22561 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22562 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22621 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22622 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22681 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22682 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22741 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22742 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22801 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22802 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22861 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22862 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22921 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22922 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22981 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22982 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23041 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23042 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23101 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23102 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23161 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23162 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23221 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23222 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23281 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23282 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23341 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23342 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23401 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23402 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23461 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23462 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23521 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23522 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23581 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23582 CTGCATGATGCTTAG 23596 >KF530064 Human coronavirus OC43 strain OC43/human/USA/9612-9/1996, complete genome Length = 30577 E-value = 0, Score = 1937, Bitscore = 1747.85, Identities = 1100/1275 (86%), Positives = 1232/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >MN026165 Human coronavirus OC43 isolate OC43_KLF_02_2017, partial genome Length = 30318 E-value = 0, Score = 1926, Bitscore = 1737.93, Identities = 1100/1275 (86%), Positives = 1230/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 21974 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22033 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22034 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22093 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22094 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22153 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22154 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22213 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22214 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22273 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22274 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22333 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22334 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22393 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22394 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22453 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++| Sbjct: 22454 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAT 22513 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22514 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22570 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22571 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22630 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22631 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 22690 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22691 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 22750 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 22751 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 22810 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 22811 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 22870 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 22871 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 22930 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 22931 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 22990 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 22991 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23050 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23051 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23110 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+| Sbjct: 23111 GATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGGT 23170 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23171 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23230 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23231 CTGCATGATGCTTAG 23245 >KY014281 Human coronavirus OC43 isolate 2002-04, complete genome Length = 30602 E-value = 0, Score = 1932, Bitscore = 1743.34, Identities = 1099/1275 (86%), Positives = 1231/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22269 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22328 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22329 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22388 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22389 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22448 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22449 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22508 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22509 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22568 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22569 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22628 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22629 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22688 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22689 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22748 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22749 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22808 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22809 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22868 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22869 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22928 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22929 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 22988 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22989 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23048 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23049 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23108 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23109 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23168 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23169 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23228 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23229 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23288 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23289 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23348 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23349 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23408 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|| +||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23409 GATTTACTCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23468 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23469 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23528 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23529 CTGCATGATGCTTAG 23543 >KF530092 Human coronavirus OC43 strain OC43/human/USA/008-5/2000, complete genome Length = 30577 E-value = 0, Score = 1932, Bitscore = 1743.34, Identities = 1099/1275 (86%), Positives = 1231/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +||| Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCCT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|| +||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACTCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530080 Human coronavirus OC43 strain OC43/human/USA/9712-31/1997, complete genome Length = 30577 E-value = 0, Score = 1932, Bitscore = 1743.34, Identities = 1099/1275 (86%), Positives = 1231/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +| | Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCAT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530072 Human coronavirus OC43 strain OC43/human/USA/9712-13/1997, complete genome Length = 30577 E-value = 0, Score = 1932, Bitscore = 1743.34, Identities = 1099/1275 (86%), Positives = 1231/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22515 AATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +| ||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTGCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| | |||| |+| |||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGTACAAGCTAGAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTACTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 TCTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22934 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22935 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22994 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22995 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23054 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||| ||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23055 ATTAGCACTGGTTTTGATTTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23114 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||||||||||||||| ||+||||||||||||||||++|||||| Sbjct: 23115 GCCATTTCAAATGAGCTATTGTTAACTGTTCCAACGAAAGCAATCTGTCTTAATAAGCGT 23174 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23175 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23234 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+||||||||||||||||| |||||||||||+||+ Sbjct: 23235 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGCAATTCTACTACCAAC 23294 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23295 TATGTTGGTGTTTATGATATTAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23354 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 || |||||| |+ ||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23355 TTATTATATAATGCACCTTGTTTTTCACAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23414 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+| +| | Sbjct: 23415 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTGATATTAATATCCAT 23474 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23475 GATTTACCCATTTGTGTGCATGACCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23534 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+||||||||||||||||||||||||+|||||||| ||||||| Sbjct: 23535 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGTTACTAGG 23594 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23595 CTGCATGATGCTTAG 23609 >KF530098 Human coronavirus OC43 strain OC43/human/USA/965-6/1996, complete genome Length = 30578 E-value = 0, Score = 1923, Bitscore = 1735.23, Identities = 1099/1275 (86%), Positives = 1230/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >AY903459 Human coronavirus OC43 strain 87309 Belgium 2003, complete genome Length = 30723 E-value = 0, Score = 1924, Bitscore = 1736.13, Identities = 1100/1275 (86%), Positives = 1229/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCTGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+|| |||||+|| ||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCACCTTGTTTTTCTCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KY967360 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2476/2015, complete genome Length = 30674 E-value = 0, Score = 1921, Bitscore = 1733.42, Identities = 1099/1275 (86%), Positives = 1229/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++| Sbjct: 22796 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAT 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22913 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23093 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23453 GATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23513 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >KY014282 Human coronavirus OC43 isolate 2007-09, complete genome Length = 30659 E-value = 0, Score = 1921, Bitscore = 1733.42, Identities = 1099/1275 (86%), Positives = 1229/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22325 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22384 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22385 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22444 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22445 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22504 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22505 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22564 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22565 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22624 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22625 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22684 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22685 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22744 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22745 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22804 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22805 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22864 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22865 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22921 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22922 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22981 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22982 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTTTACAGAAACC 23041 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23042 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23101 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23102 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23161 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23162 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23221 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23222 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23281 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23282 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23341 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23342 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23401 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23402 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23461 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23462 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23521 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23522 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23581 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23582 CTGCATGATGCTTAG 23596 >KF923900 Human coronavirus OC43 isolate 3647/2006, complete genome Length = 30722 E-value = 0, Score = 1922, Bitscore = 1734.32, Identities = 1100/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923899 Human coronavirus OC43 isolate 3582/2006, complete genome Length = 30722 E-value = 0, Score = 1922, Bitscore = 1734.32, Identities = 1100/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572664 Human coronavirus OC43 strain 229_05 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1922, Bitscore = 1734.32, Identities = 1100/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >JN129834 Human coronavirus OC43 strain HK04-01, complete genome Length = 30710 E-value = 0, Score = 1922, Bitscore = 1734.32, Identities = 1100/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22522 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22822 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22938 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22939 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22998 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22999 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23058 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23059 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23118 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23119 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23178 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23179 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23238 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23239 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23298 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23299 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23358 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23359 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23418 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 23419 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 23478 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23479 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23538 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23539 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23598 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23599 CTGCATGATGCTTAG 23613 >KF530084 Human coronavirus OC43 strain OC43/human/USA/951-18/1995, complete genome Length = 30577 E-value = 0, Score = 1918, Bitscore = 1730.72, Identities = 1098/1275 (86%), Positives = 1229/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+||+||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCATATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||| ||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAATTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >KF530070 Human coronavirus OC43 strain OC43/human/USA/991-19/1999, complete genome Length = 30573 E-value = 0, Score = 1919, Bitscore = 1731.62, Identities = 1099/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22336 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22395 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22396 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22455 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22456 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22515 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22516 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22575 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22576 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22635 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22636 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22695 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22696 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22755 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22756 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22815 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22816 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22875 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22876 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22932 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22933 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22992 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22993 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23052 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23053 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23112 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23113 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23172 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23173 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23232 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23233 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23292 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23293 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23352 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+|| |||||+|| ||||||||||||+|+|||+||||| Sbjct: 23353 TTGTTATATAATTCATCTTGTTTTTCTCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23412 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23413 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23472 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23473 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23532 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23533 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23592 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23593 CTGCATGATGCTTAG 23607 >KF530068 Human coronavirus OC43 strain OC43/human/USA/007-11/2000, complete genome Length = 30572 E-value = 0, Score = 1919, Bitscore = 1731.62, Identities = 1099/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+|| |||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCTCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >MT118672 Human coronavirus OC43 strain 2018_8663, partial genome Length = 30643 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22267 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22326 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22327 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22386 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22387 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22446 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22447 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22506 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22507 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22566 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22567 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22626 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22627 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22686 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22687 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22746 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22747 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22806 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22807 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22863 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22864 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22923 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22924 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 22983 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22984 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23043 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23044 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23103 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23104 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23163 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23164 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23223 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23224 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23283 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23284 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23343 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23344 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23403 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23404 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23463 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23464 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23523 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23524 CTGCATGATGCTTAG 23538 >MT118671 Human coronavirus OC43 strain 2018_8596, partial genome Length = 30692 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22796 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22913 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23093 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23453 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23513 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >LC654456 Human coronavirus OC43 Tokyo_SGH-71_2016 RNA, complete genome Length = 30737 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >LC654450 Human coronavirus OC43 Fukushima_O120_2017 RNA, complete genome Length = 30724 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22522 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22582 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCATAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22762 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22822 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22882 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22938 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22939 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22998 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22999 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23058 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23059 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23118 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23119 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23178 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23179 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23238 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23239 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23298 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23299 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23358 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23359 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23418 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23419 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23478 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23479 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23538 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23539 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23598 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23599 CTGCATGATGCTTAG 23613 >LC315649 Human coronavirus OC43 Tokyo/SGH-65/2016 RNA, complete genome Length = 30737 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||| +|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTTTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KF923905 Human coronavirus OC43 isolate 229/2005, complete genome Length = 30722 E-value = 0, Score = 1917, Bitscore = 1729.82, Identities = 1099/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| ||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACATGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923891 Human coronavirus OC43 isolate 5240/2007, complete genome Length = 30713 E-value = 0, Score = 1917, Bitscore = 1729.82, Identities = 1099/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923889 Human coronavirus OC43 isolate 1926/2006, complete genome Length = 30719 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAC 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+|||| |+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTCTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572676 Human coronavirus OC43 strain 5240_07 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1917, Bitscore = 1729.82, Identities = 1099/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572657 Human coronavirus OC43 strain 1926_06 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAC 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+|||| |+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTCTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572650 Human coronavirus OC43 strain 1537A_09 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1917, Bitscore = 1729.82, Identities = 1099/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >AY903460 Human coronavirus OC43 strain 19572 Belgium 2004, complete genome Length = 30723 E-value = 0, Score = 1917, Bitscore = 1729.82, Identities = 1099/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 23432 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KF572700 Human coronavirus OC43 strain 8164_09 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1916, Bitscore = 1728.91, Identities = 1098/1275 (86%), Positives = 1228/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++| |||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGG-GATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572656 Human coronavirus OC43 strain 1919A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1914, Bitscore = 1727.11, Identities = 1098/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AACCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTCATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 +|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 ATTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF530081 Human coronavirus OC43 strain OC43/human/USA/991-5/1999, complete genome Length = 30571 E-value = 0, Score = 1914, Bitscore = 1727.11, Identities = 1098/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+|||||| |||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTTTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+|| |||||+|| ||||||||||||+|+| |+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCTCAGCAAGGCGTTTTTAGGTATGATAGTGTTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23411 AGTGTCTGGCCTCTCTATCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MW532110 Human coronavirus OC43 strain OC43/China/02/2009, complete genome Length = 30677 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22809 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23286 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23406 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23466 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23526 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >MW052042 Human coronavirus OC43 strain 2019_0536, partial genome Length = 30651 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| ||||||| |||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGTGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22796 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22913 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23093 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23453 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23513 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >MN306043 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC0841/2019, complete genome Length = 30716 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||| +|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGTTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >MK327281 Human coronavirus OC43 isolate MDS15, partial genome Length = 30688 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+||| |||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTTAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23411 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >KY674918 Human coronavirus OC43 strain N07-1647B, complete genome Length = 30550 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22796 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22913 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23093 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23393 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23453 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23513 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >KY674917 Human coronavirus OC43 strain N07-1609B, complete genome Length = 30536 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23412 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >KY554973 Human coronavirus OC43 strain N07-1689B_116X, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KY554972 Human coronavirus OC43 strain N07-1541B_433X, complete genome Length = 30710 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923924 Human coronavirus OC43 isolate 10290/2010, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923921 Human coronavirus OC43 isolate 69A/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923920 Human coronavirus OC43 isolate 5617/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923919 Human coronavirus OC43 isolate 5595/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923918 Human coronavirus OC43 isolate 10108/2010, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923917 Human coronavirus OC43 isolate 5566/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923916 Human coronavirus OC43 isolate 5519/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923915 Human coronavirus OC43 isolate 5517/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923914 Human coronavirus OC43 isolate 5508/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923913 Human coronavirus OC43 isolate 5485/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923912 Human coronavirus OC43 isolate 5484/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923911 Human coronavirus OC43 isolate 5479/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923910 Human coronavirus OC43 isolate 5445/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923909 Human coronavirus OC43 isolate 5442/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923908 Human coronavirus OC43 isolate 5414/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923907 Human coronavirus OC43 isolate 5370/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923896 Human coronavirus OC43 isolate 3074A/2012, complete genome Length = 30737 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923892 Human coronavirus OC43 isolate 5345/2007, complete genome Length = 30713 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572707 Human coronavirus OC43 strain 10290_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572669 Human coronavirus OC43 strain 3194A_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||| ||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGTTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572665 Human coronavirus OC43 strain 2941A_11 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572663 Human coronavirus OC43 strain 2171A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572662 Human coronavirus OC43 strain 2151A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572653 Human coronavirus OC43 strain 1702_06 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAC 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+|||| |+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTCTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572649 Human coronavirus OC43 strain 1489A_09 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572631 Human coronavirus OC43 strain 1034A_08 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572630 Human coronavirus OC43 strain 1029A_08 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572628 Human coronavirus OC43 strain 10108_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF530099 Human coronavirus OC43 strain OC43/human/USA/971-5/1997, complete genome Length = 30578 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||||| |||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCTTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||| ||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTCAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >KF530069 Human coronavirus OC43 strain OC43/human/USA/982-4/1998, complete genome Length = 30578 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+|| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAC 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 |||||||||||||||||| |+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTCTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >KF530063 Human coronavirus OC43 strain OC43/human/USA/9612-48/1996, complete genome Length = 30577 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||| ||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22335 ATGTTTTTGTTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22394 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22395 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22454 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22455 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22514 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22515 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22574 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22575 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22634 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22635 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22694 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22695 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22754 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22755 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22814 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22815 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22874 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22875 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22931 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22932 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22991 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||| ||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 22992 AGTCAATATTATTTCAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23051 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23052 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23111 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23112 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23171 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23172 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23231 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23232 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23291 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23292 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23351 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23352 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23411 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23412 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23471 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23472 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23531 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23532 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23591 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23592 CTGCATGATGCTTAG 23606 >JN129835 Human coronavirus OC43 strain HK04-02, complete genome Length = 30722 E-value = 0, Score = 1912, Bitscore = 1725.31, Identities = 1098/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTCATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923922 Human coronavirus OC43 isolate 8164/2009, complete genome Length = 30713 E-value = 0, Score = 1911, Bitscore = 1724.41, Identities = 1097/1275 (86%), Positives = 1227/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++|| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTTCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++| |||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 TTTGG-GATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923886 Human coronavirus OC43 isolate 1908A/2010, complete genome Length = 30719 E-value = 0, Score = 1909, Bitscore = 1722.6, Identities = 1097/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+||||||||||||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCTGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTCATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||| +||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAGTGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 +|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 ATTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572655 Human coronavirus OC43 strain 1908A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1909, Bitscore = 1722.6, Identities = 1097/1275 (86%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++| Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTCATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||| +||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAGTGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 +|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 ATTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >MK303624 Human coronavirus OC43 isolate MDS14, complete genome Length = 30664 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTATATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||| ||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGCAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MK303623 Human coronavirus OC43 isolate MDS12, complete genome Length = 30419 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||| ||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGCTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MG197722 Human coronavirus OC43 strain YC-207, complete genome Length = 30515 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22245 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22304 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22305 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22364 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22365 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22424 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22425 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22484 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22485 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22544 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22545 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22604 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22605 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22664 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22665 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22724 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22725 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22784 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22785 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22841 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22842 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22901 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22902 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22961 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22962 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23021 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23022 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23081 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23082 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23141 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23142 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23201 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23202 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23261 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23262 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23321 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23322 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23381 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23382 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23441 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23442 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23501 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23502 CTGCATGATGCTTAG 23516 >MG197716 Human coronavirus OC43 strain WZ-303, complete genome Length = 30515 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22279 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22338 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22339 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22398 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22399 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22458 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22459 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22518 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22519 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22578 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22579 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22638 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22639 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22698 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22699 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22758 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22759 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22818 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22819 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22875 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22876 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22935 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22936 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22995 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22996 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23055 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23056 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23115 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23116 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23175 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23176 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23235 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23236 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23295 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23296 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23355 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23356 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23415 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23416 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23475 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23476 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23535 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23536 CTGCATGATGCTTAG 23550 >MG197715 Human coronavirus OC43 strain GZYF-26, complete genome Length = 30530 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22279 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22338 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22339 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22398 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22399 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22458 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22459 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22518 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22519 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22578 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22579 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22638 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22639 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22698 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22699 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22758 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22759 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22818 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22819 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22875 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22876 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22935 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22936 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22995 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22996 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23055 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23056 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23115 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23116 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23175 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23176 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23235 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23236 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23295 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23296 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23355 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23356 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23415 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23416 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23475 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23476 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23535 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23536 CTGCATGATGCTTAG 23550 >MG197713 Human coronavirus OC43 strain BJ-221, complete genome Length = 30495 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22266 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22325 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22326 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22385 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22386 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22445 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22446 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22505 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22506 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22565 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22566 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22625 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22626 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22685 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22686 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22745 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22746 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22805 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22806 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22862 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22863 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22922 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22923 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22982 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22983 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23042 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23043 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23102 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23103 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23162 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23163 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23222 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23223 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23282 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23283 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23342 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23343 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23402 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23403 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23462 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23463 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23522 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23523 CTGCATGATGCTTAG 23537 >MG197710 Human coronavirus OC43 strain BJ-124, complete genome Length = 30544 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22259 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22318 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22319 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22378 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22379 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22438 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22439 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22498 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22499 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22558 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22559 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22618 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22619 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22678 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22679 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22738 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22739 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22798 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22799 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22855 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22856 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22915 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22916 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22975 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22976 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23035 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23036 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23095 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23096 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23155 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23156 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23215 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23216 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23275 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23276 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23335 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23336 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23395 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23396 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23455 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23456 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23515 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23516 CTGCATGATGCTTAG 23530 >MF314143 Human coronavirus OC43 isolate HCoV-OC43/USA/ACRI_0052/2016, complete genome Length = 30737 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||| ||||+|||||||| |||||| |+|+|||+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTACCATATCTTTATAATGGCTCCGCACAAGCTACAGCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||| ||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 TCCATTTCAAATGAGCTTTTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KY674920 Human coronavirus OC43 strain N09-595B, complete genome Length = 30581 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22262 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22321 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22322 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22381 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22382 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22441 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22442 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22501 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22502 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22561 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22562 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22621 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22622 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22681 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22682 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22741 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22742 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22801 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22802 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22858 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22859 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22918 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22919 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22978 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22979 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23038 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23039 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23098 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23099 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23158 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23159 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23218 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23219 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23278 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23279 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23338 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23339 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23398 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+ |||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23399 GATTTACCCGTTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23458 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23459 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23518 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23519 CTGCATGATGCTTAG 23533 >KY554975 Human coronavirus OC43 strain N09-382B, complete genome Length = 30669 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+ |||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCGTTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KY554974 Human coronavirus OC43 strain N08-33B_360X, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+ |||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCGTTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538979 Human coronavirus OC43 isolate MY-U1975/13, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538978 Human coronavirus OC43 isolate MY-U1758/13, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538972 Human coronavirus OC43 isolate MY-U774/12, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538970 Human coronavirus OC43 isolate MY-U710/12, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538966 Human coronavirus OC43 isolate MY-U236/12, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538964 Human coronavirus OC43 isolate MY-U002/12, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX344031 Human coronavirus OC43 isolate LRTI_238, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+ ||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCCGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KU131570 Human coronavirus OC43 strain HCoV-OC43/UK/London/2011, complete genome Length = 30746 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22356 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22415 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22416 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22475 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22476 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22535 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+||||||||| |||||||||+|| ||| Sbjct: 22536 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGACAACTCCATTTTCAGG 22595 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22596 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22655 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22656 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22715 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22716 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22775 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22776 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22835 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+| ||+||++||| | |||||++ Sbjct: 22836 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGTTTATATAGCTCCTCAAGCTAAC 22895 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22896 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22952 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22953 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23012 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23013 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23072 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23073 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23132 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23133 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23192 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23193 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23252 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23253 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23312 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23313 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23372 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23373 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23432 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23433 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23492 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+ ||||| ||||||||||||||||+|||||||+ Sbjct: 23493 GATTTACCCATTTGTGTGTATGATCCGTTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23552 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||| ||| |||||||||+|||||||| ||||||| Sbjct: 23553 GTTGCGATTGTAATTATTGTAGTTTTGTTTTTACATTTTATGGTGGATAATGTTACTAGG 23612 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23613 CTGCATGATGCTTAG 23627 >KF923906 Human coronavirus OC43 isolate 3194A/2012, complete genome Length = 30737 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||| |||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTTTGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||| ||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCCATTTCAAATGAGTTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923904 Human coronavirus OC43 isolate 12694/2012, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923901 Human coronavirus OC43 isolate 5472/2007, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGAAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923895 Human coronavirus OC43 isolate 10285/2010, complete genome Length = 30731 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||| ||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGTTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923894 Human coronavirus OC43 isolate 5352/2007, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++|| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTACTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923893 Human coronavirus OC43 isolate 2151A/2010, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|| ||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGCATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923890 Human coronavirus OC43 isolate 39A/2007, complete genome Length = 30713 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AACCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| || ||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCGCAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923888 Human coronavirus OC43 isolate 2145A/2010, complete genome Length = 30719 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 | ||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCTATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCTATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923887 Human coronavirus OC43 isolate 1997A/2010, complete genome Length = 30719 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCTAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 | ||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCTATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCTATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572703 Human coronavirus OC43 strain 8942_09 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 || |||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAAGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572696 Human coronavirus OC43 strain 5656_07 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|| ||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAACACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572695 Human coronavirus OC43 strain 5625_07 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+ |++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATTTAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572684 Human coronavirus OC43 strain 5472_07 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGAAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572673 Human coronavirus OC43 strain 39A_07 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AACCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| || ||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCGCAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572661 Human coronavirus OC43 strain 2145A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 | ||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCTATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCTATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572658 Human coronavirus OC43 strain 1997A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1906, Bitscore = 1719.9, Identities = 1096/1275 (85%), Positives = 1226/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGTTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCTAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 | ||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCTATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCTATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572652 Human coronavirus OC43 strain 1593A_09 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572639 Human coronavirus OC43 strain 12651_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572633 Human coronavirus OC43 strain 10574_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572629 Human coronavirus OC43 strain 10285_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||| ||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGTTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGCCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572627 Human coronavirus OC43 strain 079A_07 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1907, Bitscore = 1720.8, Identities = 1097/1275 (86%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||| ||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACAAGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF923923 Human coronavirus OC43 isolate 892A/2008, complete genome Length = 30713 E-value = 0, Score = 1905, Bitscore = 1719.0, Identities = 1097/1275 (86%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| ||| |||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAAACCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||| ||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGCCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923898 Human coronavirus OC43 isolate 3184A/2012, complete genome Length = 30716 E-value = 0, Score = 1904, Bitscore = 1718.09, Identities = 1096/1275 (85%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|| ||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTTTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572702 Human coronavirus OC43 strain 892A_08 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1905, Bitscore = 1719.0, Identities = 1097/1275 (86%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| ||| |||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAAACCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||| ||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGCCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572668 Human coronavirus OC43 strain 3184A_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1904, Bitscore = 1718.09, Identities = 1096/1275 (85%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|| ||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTTTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >OL770288 Human coronavirus OC43 isolate HCoV-OC43/09-83/QLD/AU/2019, complete genome Length = 30665 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+ | ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTTCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >OL770287 Human coronavirus OC43 isolate HCoV-OC43/03-16118/NSW/AU/2019, complete genome Length = 30665 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+ | ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTTCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MW559057 Human coronavirus OC43 isolate Guangzhou 201301, complete genome Length = 30714 E-value = 0, Score = 1901, Bitscore = 1715.39, Identities = 1095/1275 (85%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||| ||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTTATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTCTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+||||||||||||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTTACTAGCATACTTAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+|||||+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCACCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATGTTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23432 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+| |||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTCTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >MW532111 Human coronavirus OC43 strain OC43/China/01/2009, complete genome Length = 30677 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| ||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGA 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||| ||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGTCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22809 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23286 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23406 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23466 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23526 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >MK303622 Human coronavirus OC43 isolate MDS11, complete genome Length = 30665 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+ | ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTTCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MK303621 Human coronavirus OC43 isolate MDS4, complete genome Length = 30664 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||| | || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATCACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+| |||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCATTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MK303620 Human coronavirus OC43 isolate MDS2, complete genome Length = 30665 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+| |||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCTATTTGTGTTTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MK303619 Human coronavirus OC43 isolate MDS6, complete genome Length = 30664 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+||||||||| |||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGACTATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| +|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGTTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MG197717 Human coronavirus OC43 strain WZ-522, complete genome Length = 30524 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22276 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22335 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22336 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22395 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22396 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22455 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22456 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22515 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22516 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22575 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22576 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22635 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22636 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22695 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22696 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22755 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22756 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22815 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22816 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22872 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22873 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22932 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22933 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22992 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22993 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23052 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23053 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23112 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23113 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23172 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23173 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23232 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23233 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23292 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23293 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23352 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23353 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23412 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| | ||||||||||||||+|||||||+ Sbjct: 23413 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTCATTTTGCTTGGCATTCTTTTGGGC 23472 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23473 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23532 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23533 CTGCATGATGCTTAG 23547 >MG197712 Human coronavirus OC43 strain BJ-165, complete genome Length = 30497 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22258 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22317 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22318 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22377 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22378 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22437 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22438 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22497 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22498 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22557 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22558 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22617 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22618 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22677 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22678 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22737 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22738 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22797 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22798 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22854 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22855 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22914 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22915 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22974 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22975 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23034 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23035 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23094 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23095 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23154 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23155 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23214 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23215 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23274 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23275 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23334 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23335 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23394 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+ |+|||||| ||||||||||||||||+|||||||+ Sbjct: 23395 GATTTACCCATTTGTGTGTATGATTCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23454 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23455 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23514 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23515 CTGCATGATGCTTAG 23529 >LC315647 Human coronavirus OC43 Tokyo/SGH-61/2014 RNA, complete genome Length = 30755 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22358 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22417 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22418 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22477 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22478 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22537 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22538 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22597 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22598 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22657 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22658 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22717 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22718 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22777 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22778 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22837 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+ | ||+||++||| | |||||++ Sbjct: 22838 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTTCTTATATAGCTCCTCAAGCTAAA 22897 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22898 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22954 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22955 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23014 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23015 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23074 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23075 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23134 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23135 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23194 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23195 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23254 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23255 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23314 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23315 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23374 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23375 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23434 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23435 AGTGTTTGGCCTCTCTACCCTTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23494 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23495 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23554 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23555 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23614 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23615 CTGCATGATGCTTAG 23629 >LC315646 Human coronavirus OC43 Tokyo/SGH-36/2014 RNA, complete genome Length = 30736 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+ +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATGTCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538977 Human coronavirus OC43 isolate MY-U1140/12, complete genome Length = 30716 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538976 Human coronavirus OC43 isolate MY-U1057/12, complete genome Length = 30713 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AACCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538973 Human coronavirus OC43 isolate MY-U868/12, complete genome Length = 30716 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538969 Human coronavirus OC43 isolate MY-U523/12, complete genome Length = 30716 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538968 Human coronavirus OC43 isolate MY-U464/12, complete genome Length = 30716 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCATTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538965 Human coronavirus OC43 isolate MY-U208/12, complete genome Length = 30716 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KP198611 Human coronavirus OC43 strain 1783A/10, complete genome Length = 30752 E-value = 0, Score = 1901, Bitscore = 1715.39, Identities = 1095/1275 (85%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+ |+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATTCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | ||||++ Sbjct: 22834 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCGAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|| ||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTCTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KJ958219 Human coronavirus OC43 strain LY342, complete genome Length = 30714 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||| ||+||+|| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAACAACCCTGCTTATATAGCTCCTCAAGCTAAA 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23432 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KF923925 Human coronavirus OC43 isolate 10574/2010, complete genome Length = 30713 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+||||||| |+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTCATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923903 Human coronavirus OC43 isolate 12691/2012, complete genome Length = 30713 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923902 Human coronavirus OC43 isolate 12689/2012, complete genome Length = 30713 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +|||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACT 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF923897 Human coronavirus OC43 isolate 3269A/2012, complete genome Length = 30711 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572705 Human coronavirus OC43 strain 9138_09 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|| | +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCTCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||| ||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACAAGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572654 Human coronavirus OC43 strain 1783A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1901, Bitscore = 1715.39, Identities = 1095/1275 (85%), Positives = 1225/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+ |+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATTCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | ||||++ Sbjct: 481 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCGAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||++|| +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCTACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|| ||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTCTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572645 Human coronavirus OC43 strain 12747_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|| |||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAAATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572643 Human coronavirus OC43 strain 12700_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 || |||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAAGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572641 Human coronavirus OC43 strain 12691_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572640 Human coronavirus OC43 strain 12689_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1096/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +|||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACT 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KP198610 Human coronavirus OC43 strain 2058A/10, complete genome Length = 30752 E-value = 0, Score = 1899, Bitscore = 1713.58, Identities = 1095/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+ |+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATTCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | ||||++ Sbjct: 22834 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCGAGCTAAC 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|| ||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTCTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572667 Human coronavirus OC43 strain 3089A_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1899, Bitscore = 1713.58, Identities = 1095/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCATTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572659 Human coronavirus OC43 strain 2058A_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1899, Bitscore = 1713.58, Identities = 1095/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTCAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+ |+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATTCCGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||| |||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCCGCACAAGCTATAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||||| |||||| ||||||||+||+|| ||+||++||| | ||||++ Sbjct: 481 TTTTGTAAATCTGGTAATTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCGAGCTAAC 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||| ||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATCTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 1078 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|| ||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTCTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+|||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCGATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >OK500303 Human coronavirus OC43 strain OC43/China/67/2021, complete genome Length = 30700 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >OK500302 Human coronavirus OC43 strain OC43/China/58/2019, complete genome Length = 30664 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22344 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22524 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22644 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22824 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23421 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23481 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23541 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >OK500300 Human coronavirus OC43 strain OC43/China/56/2019, complete genome Length = 30556 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22331 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22390 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22391 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22450 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22451 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22510 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22511 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22570 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22571 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22630 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22631 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22690 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22691 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22750 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22751 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22810 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22811 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22870 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22871 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22928 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23408 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23468 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23528 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >OK391227 Human coronavirus OC43 strain OC43/China/43/2019, complete genome Length = 30676 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| +|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGTTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >OK318947 Human coronavirus OC43 strain OC43/China/51/2019, complete genome Length = 30679 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >OK318945 Human coronavirus OC43 strain OC43/China/40/2019, partial genome Length = 30671 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22293 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22352 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22353 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22412 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22413 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22472 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22473 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22532 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22533 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22592 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22593 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22652 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22653 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22712 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22713 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22772 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22773 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22832 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22833 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22889 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22890 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22949 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22950 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23009 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23010 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23069 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23070 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23129 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23130 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23189 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23190 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23249 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23250 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23309 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23310 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23369 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23370 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23429 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23430 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23489 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23490 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23549 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23550 CTGCATGATGCTTAG 23564 >OK318918 Human coronavirus OC43 strain OC43/China/38/2019, complete genome Length = 30651 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >OK318917 Human coronavirus OC43 strain OC43/China/47/2019, complete genome Length = 30675 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >MW532112 Human coronavirus OC43 strain OC43/China/03/2010, complete genome Length = 30677 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22809 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+| |||| Sbjct: 23286 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCATTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| ||||||||| +||||||+| + || Sbjct: 23406 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTTATATTAATATCTCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23466 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23526 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >MF374984 Human coronavirus OC43 isolate HCoV-OC43/USA/TCNP_00204/2017, complete genome Length = 30713 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22526 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22766 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22826 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22886 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22942 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22943 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23002 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23003 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23062 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23063 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23122 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23123 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23182 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23183 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23242 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23243 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23302 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23303 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23362 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23363 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23422 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23423 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23482 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23483 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23542 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23543 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23602 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23603 CTGCATGATGCTTAG 23617 >LC654452 Human coronavirus OC43 Fukushima_H478_2018 RNA, complete genome Length = 30743 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22347 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22527 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22647 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22826 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22827 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22886 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22887 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23424 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23484 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23544 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >LC315648 Human coronavirus OC43 Tokyo/SGH-06/2015 RNA, complete genome Length = 30714 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+|| |+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTATTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22535 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23012 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||| |||||| +||||||+ +||| Sbjct: 23432 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACCGCTGCTTATATTAATGTCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KX538975 Human coronavirus OC43 isolate MY-U1024/12, complete genome Length = 30716 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATACTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538967 Human coronavirus OC43 isolate MY-U413/12, complete genome Length = 30716 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||| ||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACAGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KJ958218 Human coronavirus OC43 strain LY341, complete genome Length = 30714 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22355 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22414 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22415 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22474 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22475 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22534 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22535 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22594 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22595 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22654 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22655 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22714 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22715 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22774 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22775 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22834 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+ | ||+||++||| | |||||++ Sbjct: 22835 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTTCTTATATAGCTCCTCAAGCTAAA 22894 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22895 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22951 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22952 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23011 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||| ||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23012 AGTCAATATTATCTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23071 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23072 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23131 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23132 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23191 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23192 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23251 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23252 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23311 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23312 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23371 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23372 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23431 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23432 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23491 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23492 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23551 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23552 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23611 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23612 CTGCATGATGCTTAG 23626 >KF572638 Human coronavirus OC43 strain 12642_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||| ||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACCACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >KF572632 Human coronavirus OC43 strain 10352_10 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1897, Bitscore = 1711.78, Identities = 1095/1275 (85%), Positives = 1223/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTGTCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+ |++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCCACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >JN874562 Rabbit coronavirus HKU14 strain HKU14-10, complete genome Length = 30904 E-value = 0, Score = 1902, Bitscore = 1716.29, Identities = 1093/1275 (85%), Positives = 1225/1275 (96%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+ |||||||++||||| | |+|||||||||||+||||||||||+++||||||||||+ Sbjct: 22304 ATGTCTTTGCTTCCTAGATCTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTGAT 22363 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22364 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22423 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+||||| |||||+||| || |||+ || ||+|| ||+||||||||+|||||||||||+ Sbjct: 22424 CGTTCAGACTGTAACCATATTATTAACACTAATCCTCGTAATTATTCTTATATGGACCTT 22483 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| ||||| | |||||| Sbjct: 22484 AATCCAGCCCTATGTGATTCAGGTAAAATCTCTTCGAAAGCTGGTAACTCTTTGTTTAGG 22543 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||||||||||||||| ||||||| +|||||+|| ||+||| Sbjct: 22544 AGTTTCCACTTCACGGATTTTTATAATTACACAGGTGAAGGTCTACAAATTATATTCTAT 22603 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||| |||+|||| |||||||||||||+||+|| |||+||||||||| Sbjct: 22604 GAGGGTGTTAATTTTAATCCTTATCACGCCTTTAAATGCACCAGTTTTGGTAGTAATGAT 22663 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22664 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22723 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||| ||||||||| +|+|||+ Sbjct: 22724 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGTTCTGCACAAGATACAGCT 22783 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||| |||||||||||| ||||||||+||+||+||+||++|||||||||||++| Sbjct: 22784 CTTTGTAAACATGGTAGTTTAGTCCTTAATAATCCTGCCTACATAGCTCGTGAAGCTAAT 22843 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+|||||||| |||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22844 TTGGGGGATTATTACTATAAGGTTGAAGCTGACTTTCATTTGTCAGGTTGTGACGAGTAT 22903 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+|| |||||+|||||+||||||||||||||||||||+ Sbjct: 22904 ATCGTACCACTTTGTATTTTTAATGGTAAGTTTTTGTCGAATACAAAGTATTATGATGAT 22963 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+| ||||++|||+| || Sbjct: 22964 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTTAATTCTACTGAGACT 23023 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+| +||||||||||+||||||||| Sbjct: 23024 ATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTCTTACCCTCTGGTAATTATTTA 23083 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+|||||||| |||||||||||+||+||||||||||||||||++|||||| Sbjct: 23084 GCCATTTCAAATGAGCTATTATTAACTGTTCCCACGAAAGCAATCTGTCTTAGTAAGCGT 23143 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| || || ||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23144 AAGGATTTTACGCCTGTACAAGTGGTAGATTCTCGTTGGAACAATGCCAGGCCTTCTGAT 23203 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23204 AACATGACGGCGGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23263 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 23264 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23323 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23324 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 23383 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|| || ||+||+||||||||||||++||||||+||+| | Sbjct: 23384 AGTGTCTGGCCTCTCTACCCCTACGGTAGATGTCCTACTGCTGCTGATATTAATACCCTT 23443 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 23444 GATGTACCTATTTGTGTGTATGATCCGCTACCACTTATTTTGCTTGGCATTCTTTTGGGT 23503 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23504 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23563 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23564 CTGCATGATGCTTAG 23578 >OK500301 Human coronavirus OC43 strain OC43/China/57/2019, complete genome Length = 30581 E-value = 0, Score = 1895, Bitscore = 1709.98, Identities = 1095/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+| +||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >OK500298 Human coronavirus OC43 strain OC43/China/54/2019, complete genome Length = 30658 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||| ||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGTTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23429 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >OK500297 Human coronavirus OC43 strain OC43/China/53/2019, complete genome Length = 30708 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22340 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22399 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22400 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22459 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22460 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22519 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22520 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22579 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22580 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22639 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22640 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22699 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22700 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22759 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22760 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22819 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22820 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22879 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22880 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22936 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22937 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22996 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22997 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23056 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23057 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23116 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23117 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23176 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23177 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23236 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23237 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23296 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23297 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23356 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23357 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23416 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23417 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23476 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23477 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23536 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23537 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23596 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23597 CTGCATGATGCTTAG 23611 >OK391238 Human coronavirus OC43 strain OC43/China/41/2019, partial genome Length = 30614 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+ |+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTGACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >OK318946 Human coronavirus OC43 strain OC43/China/45/2019, complete genome Length = 30584 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22319 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22378 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22379 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22438 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22439 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22498 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22499 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22558 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22559 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22618 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22619 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22678 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22679 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22738 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22739 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22798 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22799 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22858 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22859 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22915 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22916 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22975 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22976 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23035 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23036 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23095 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23096 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23155 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23156 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23215 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23216 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23275 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23276 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23335 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23336 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23395 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23396 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23455 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23456 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23515 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23516 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23575 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23576 CTGCATGATGCTTAG 23590 >LC720429 Human coronavirus OC43 HCoVOC43_Fukushima_O989_2019 RNA, nearly complete genome Length = 30705 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22344 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22403 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22404 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22463 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22464 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22523 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22524 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22583 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22584 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22643 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+| |+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22644 GAGGGTGTGAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22703 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22704 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22763 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22764 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22823 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22824 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22883 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22884 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22940 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22941 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23000 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23001 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23060 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23061 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23120 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23121 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23180 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23181 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23240 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23241 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23300 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23301 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23360 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23361 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23420 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23421 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23480 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23481 GATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23540 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23541 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23600 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23601 CTGCATGATGCTTAG 23615 >LC687400 Human coronavirus OC43 Fukushima_O502_2019 RNA, complete genome Length = 30693 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22347 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22527 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22647 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22826 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22827 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22886 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22887 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+||||||||||||| |+|+|||+||||| Sbjct: 23364 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTTTGATAATATTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23424 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23484 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23544 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >LC654451 Human coronavirus OC43 Fukushima_H509_2019 RNA, complete genome Length = 30743 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22347 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22527 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22647 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22826 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22827 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22886 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22887 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+||||||||||||| |+|+|||+||||| Sbjct: 23364 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTTTGATAATATTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23424 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23484 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23544 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >KX538974 Human coronavirus OC43 isolate MY-U945/12, complete genome Length = 30716 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||| ||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCACTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KX538971 Human coronavirus OC43 isolate MY-U732/12, complete genome Length = 30716 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||| ||||||||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTACAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||| ||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCACTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 ||| |||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGTATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >KF572644 Human coronavirus OC43 strain 12741_12 hemagglutinin-esterase protein (HE) gene, complete cds Length = 1272 E-value = 0, Score = 1892, Bitscore = 1707.27, Identities = 1094/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+ ||||||||||+ |||||||||+++|||||||| |+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTATTTTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 181 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 481 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 597 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 598 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 657 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 658 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 717 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 718 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 777 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 778 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 837 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 838 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 897 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 898 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 957 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 958 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 1017 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1018 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 1077 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 1078 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 1137 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+| +|||||| ||||||||||||||||+|||||||+ Sbjct: 1138 GATTTACCCATTTGTGTGTATGATCGGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 1197 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||| | ||||||| Sbjct: 1198 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAACGTTACTAGG 1257 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 1258 CTGCATGATGCTTAG 1272 >OK500299 Human coronavirus OC43 strain OC43/China/55/2019, complete genome Length = 30618 E-value = 0, Score = 1890, Bitscore = 1705.47, Identities = 1094/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22327 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22386 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22387 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22446 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22447 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22506 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22507 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22566 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22567 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22626 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22627 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22686 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22687 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22746 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22747 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22806 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22807 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22866 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22867 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22923 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22924 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22983 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+| ||||+ || +||||| Sbjct: 22984 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTTAATTCAACAGAAACC 23043 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+| +||||||||||+||||||||| Sbjct: 23044 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTCTTACCCTCTGGTAATTATTTA 23103 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23104 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23163 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23164 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23223 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23224 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23283 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23284 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23343 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23344 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23403 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+||||| ||+||+|||||||||||| +||||||+| +||| Sbjct: 23404 AGTGTTTGGCCTCTCTACCCCTATGGTAGATGTCCTACTGCTGCTTATATTAATATCCCT 23463 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23464 GATTTACCTATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23523 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23524 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23583 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23584 CTGCATGATGCTTAG 23598 >OK318944 Human coronavirus OC43 strain OC43/China/34/2019, complete genome Length = 30689 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >OK318943 Human coronavirus OC43 strain OC43/China/27/2019, complete genome Length = 30689 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >OK318942 Human coronavirus OC43 strain OC43/China/24/2019, complete genome Length = 30689 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23431 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >OK318941 Human coronavirus OC43 strain OC43/China/22/2019, complete genome Length = 30646 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22331 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22390 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22391 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22450 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22451 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22510 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22511 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22570 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22571 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22630 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22631 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22690 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22691 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22750 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22751 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22810 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22811 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22870 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22871 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22927 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22928 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22987 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22988 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23047 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23048 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23107 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23108 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23167 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23168 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23227 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23228 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23287 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23288 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23347 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23348 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23407 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23408 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23467 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23468 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23527 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23528 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23587 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23588 CTGCATGATGCTTAG 23602 >OK318940 Human coronavirus OC43 strain OC43/China/21/2019, complete genome Length = 30667 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >MH685718 Betacoronavirus 1 isolate E0-034 ORF1ab gene, complete cds; ORF1ab gene, partial cds; and NS2a, HE, S, NS5a, and N genes, complete cds Length = 30520 E-value = 0, Score = 1891, Bitscore = 1706.37, Identities = 1094/1275 (85%), Positives = 1221/1275 (95%), Gaps = 9/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22188 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22247 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22248 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22307 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22308 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22367 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22368 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22427 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22428 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22487 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +|||| |||||| Sbjct: 22488 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCT------AATGAT 22541 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22542 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22601 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22602 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22661 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22662 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22721 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22722 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22778 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22779 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22838 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22839 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22898 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22899 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 22958 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 22959 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23018 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23019 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23078 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23079 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23138 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23139 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23198 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23199 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23258 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+||+||| Sbjct: 23259 AGTGTTTGGCCTCTCTACTCCTATGGCAGATGTCCTACTGCTGCTTATATTAATACCCCT 23318 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23319 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23378 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23379 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23438 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23439 CTGCATGATGCTTAG 23453 >MG197720 Human coronavirus OC43 strain YC-68, complete genome Length = 30567 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22268 ATGTTTTTGCTTCCTAGATTCATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22327 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22328 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22387 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22388 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22447 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22448 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22507 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||| ||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22508 AGTTTTCACTTTACCGATTTCCATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22567 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22568 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22627 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22628 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22687 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22688 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22747 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22748 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22807 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22808 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22864 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22865 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22924 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22925 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22984 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22985 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23044 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23045 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23104 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23105 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23164 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23165 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23224 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23225 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23284 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23285 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23344 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23345 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23404 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23405 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23464 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23465 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23524 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23525 CTGCATGATGCTTAG 23539 >MG197714 Human coronavirus OC43 strain CC-23, complete genome Length = 30551 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22276 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22335 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22336 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22395 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22396 CGTTCAGATTGTAATCACATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22455 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22456 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22515 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22516 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22575 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| +|| |||+||||||||| Sbjct: 22576 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAATCGTTTTGGTAGTAATGAT 22635 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22636 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22695 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22696 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22755 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22756 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22815 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22816 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22872 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22873 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22932 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22933 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22992 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22993 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23052 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23053 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23112 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++| |||+ Sbjct: 23113 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTTTGAT 23172 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23173 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23232 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23233 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23292 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23293 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23352 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23353 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23412 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23413 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23472 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23473 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23532 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23533 CTGCATGATGCTTAG 23547 >MG197711 Human coronavirus OC43 strain BJ-164, complete genome Length = 30544 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22266 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22325 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22326 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22385 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22386 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22445 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22446 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22505 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||| ||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22506 AGTTTTCACTTTACCGATTTCCATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22565 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22566 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22625 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22626 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22685 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22686 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22745 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22746 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22805 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22806 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22862 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22863 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22922 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22923 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22982 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22983 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23042 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23043 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23102 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23103 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23162 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23163 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23222 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23223 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23282 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23283 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23342 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23343 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23402 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23403 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23462 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23463 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23522 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23523 CTGCATGATGCTTAG 23537 >LC654453 Human coronavirus OC43 Fukushima_H189_2018 RNA, complete genome Length = 30713 E-value = 0, Score = 1889, Bitscore = 1704.57, Identities = 1093/1275 (85%), Positives = 1222/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22349 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22408 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22409 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22468 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22469 CGTTCAGATTGTAATCACATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22528 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22529 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22588 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22589 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22648 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| +|| |||+||||||||| Sbjct: 22649 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAATCGTTTTGGTAGTAATGAT 22708 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22709 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22768 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22769 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22828 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22829 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22888 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22889 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22945 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22946 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 23005 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23006 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23065 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23066 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23125 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23126 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23185 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++| |||+ Sbjct: 23186 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTTTGAT 23245 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23246 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23305 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23306 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23365 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23366 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23425 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23426 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23485 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23486 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23545 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23546 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23605 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23606 CTGCATGATGCTTAG 23620 >OK391226 Human coronavirus OC43 strain OC43/China/36/2019, complete genome Length = 30686 E-value = 0, Score = 1887, Bitscore = 1702.76, Identities = 1093/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22352 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22411 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22412 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22471 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22472 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22531 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22532 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22591 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22592 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22651 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22652 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22711 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22712 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22771 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22772 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22831 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22832 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22891 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22892 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATCTGTCAGGTTGTGACGAGTAT 22948 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22949 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23008 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23009 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23068 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23069 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23128 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23129 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23188 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23189 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23248 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23249 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23308 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23309 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23368 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23369 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23428 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23429 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23488 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23489 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23548 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | |||||||| |||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23549 GTTGCCATTGTAATTATTTTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23608 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23609 CTGCATGATGCTTAG 23623 >LC687399 Human coronavirus OC43 Fukushima_H773_2019 RNA, complete genome Length = 30677 E-value = 0, Score = 1887, Bitscore = 1702.76, Identities = 1093/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22347 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22406 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22407 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22466 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22467 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22526 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22527 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22586 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22587 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22646 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+| |+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22647 GAGGGTGTGAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22706 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 ||||||||||| |||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22707 ATTTGGATGCATAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22766 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22767 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22826 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22827 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22886 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22887 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22943 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22944 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23003 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23004 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23063 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23064 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23123 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23124 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23183 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23184 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23243 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23244 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23303 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23304 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23363 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23364 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23423 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23424 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23483 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23484 GATTTACCCATTTGTGTGTATGATCCTCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23543 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23544 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23603 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23604 CTGCATGATGCTTAG 23618 >LC654454 Human coronavirus OC43 Fukushima_H148_2018 RNA, complete genome Length = 30740 E-value = 0, Score = 1887, Bitscore = 1702.76, Identities = 1093/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22345 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22525 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22825 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 ||||||||||||||||| |||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23002 AGTCAATATTATTTTAACAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23422 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| |||||||| |||||||+|||||||+ Sbjct: 23482 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGTTTGGCATTCTTTTGGGC 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23542 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >KY967356 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC2924/2015, complete genome Length = 30648 E-value = 0, Score = 1887, Bitscore = 1702.76, Identities = 1093/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22496 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 || |||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGCTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 || ||+|||||+|||||||+|||| ||||| ||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGTAGCCTTACTTTTGTTAATGTATCATATTTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22796 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22913 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22973 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23093 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +| | Sbjct: 23393 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCTT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23453 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23513 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >MW532108 Human coronavirus OC43 strain OC43/China/07/2017, complete genome Length = 30668 E-value = 0, Score = 1884, Bitscore = 1700.06, Identities = 1092/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCACATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| +|| |||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAATCGTTTTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22809 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++| |||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTTTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||| ||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGGCGGTTGCCTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23286 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23406 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23466 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23526 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >MK303625 Human coronavirus OC43 isolate MDS16, complete genome Length = 30668 E-value = 0, Score = 1884, Bitscore = 1700.06, Identities = 1092/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||| +|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTTTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+|||||| |||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACACCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|| ||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGACTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|| ||+|| ||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCATCAAGGCGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23411 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+| Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGT 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MG197721 Human coronavirus OC43 strain YC-72, complete genome Length = 30521 E-value = 0, Score = 1884, Bitscore = 1700.06, Identities = 1092/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22255 ATGTTTTTGCTTCCTAGATTCATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22314 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22315 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22374 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22375 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22434 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22435 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22494 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||| ||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22495 AGTTTTCACTTTACCGATTTCCATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22554 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22555 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22614 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22615 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22674 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22675 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22734 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22735 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22794 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22795 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22851 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22852 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22911 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+|||| |+ || +||||| Sbjct: 22912 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAACTCAACAGAAACC 22971 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22972 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23031 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23032 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23091 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23092 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23151 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23152 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23211 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23212 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23271 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23272 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23331 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23332 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23391 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23392 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23451 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23452 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23511 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23512 CTGCATGATGCTTAG 23526 >MG197719 Human coronavirus OC43 strain YC-67, complete genome Length = 30499 E-value = 0, Score = 1884, Bitscore = 1700.06, Identities = 1092/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22247 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22306 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22307 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22366 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22367 CGTTCAGATTGTAATCACATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22426 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22427 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22486 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22487 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22546 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| +|| |||+||||||||| Sbjct: 22547 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAATCGTTTTGGTAGTAATGAT 22606 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22607 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22666 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22667 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22726 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22727 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22786 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22787 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22843 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22844 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22903 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22904 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22963 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22964 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23023 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23024 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23083 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++| |||+ Sbjct: 23084 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTTTGAT 23143 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23144 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23203 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23204 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23263 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23264 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23323 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23324 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23383 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 || +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23384 CATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23443 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23444 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23503 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23504 CTGCATGATGCTTAG 23518 >MG197718 Human coronavirus OC43 strain YC-55, complete genome Length = 30538 E-value = 0, Score = 1884, Bitscore = 1700.06, Identities = 1092/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22258 ATGTTTTTGCTTCCTAGATTCATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22317 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22318 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22377 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22378 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22437 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22438 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22497 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||| ||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22498 AGTTTTCACTTTACCGATTTCCATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22557 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22558 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22617 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22618 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22677 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22678 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22737 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22738 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22797 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22798 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22854 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22855 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22914 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+|||| |+ || +||||| Sbjct: 22915 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAACTCAACAGAAACC 22974 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22975 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23034 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23035 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23094 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23095 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23154 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23155 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23214 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23215 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23274 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23275 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23334 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23335 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23394 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23395 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23454 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23455 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23514 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23515 CTGCATGATGCTTAG 23529 >MG197709 Human coronavirus OC43 strain BJ-112, complete genome Length = 30550 E-value = 0, Score = 1884, Bitscore = 1700.06, Identities = 1092/1275 (85%), Positives = 1221/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+|||| |||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22262 ATGTTTTTTCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22321 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22322 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22381 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22382 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22441 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22442 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22501 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+||||| ||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22502 AGTTTTCACTTTACCGATTTCCATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22561 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22562 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22621 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22622 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22681 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22682 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22741 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22742 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22801 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22802 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22858 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22859 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22918 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22919 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 22978 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 22979 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23038 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23039 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23098 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23099 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23158 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23159 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23218 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23219 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23278 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23279 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23338 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23339 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23398 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23399 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23458 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23459 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23518 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23519 CTGCATGATGCTTAG 23533 >MH828490 Human coronavirus OC43 strain vzcorona-b1 replicase polyprotein 1ab gene, complete cds Length = 30716 E-value = 0, Score = 1882, Bitscore = 1698.26, Identities = 1092/1275 (85%), Positives = 1220/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||| ||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22354 ATGTTTTTGTTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22413 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22414 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22473 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22474 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22533 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22534 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22593 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22594 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22653 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22654 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22713 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22714 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22773 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|| ||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22774 CGCAGCCTTACTTTCGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22833 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22834 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22893 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22894 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22950 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22951 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23010 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|||||||||||||||| |+||||||+ || +||||| Sbjct: 23011 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGCTCTCAATTCAACAGAAACC 23070 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23071 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23130 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23131 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23190 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23191 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23250 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23251 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23310 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23311 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23370 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23371 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23430 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23431 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23490 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23491 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23550 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23551 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23610 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23611 CTGCATGATGCTTAG 23625 >OK391225 Human coronavirus OC43 strain OC43/China/32/2019, complete genome Length = 30675 E-value = 0, Score = 1879, Bitscore = 1695.55, Identities = 1091/1275 (85%), Positives = 1220/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22346 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22405 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22406 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22465 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22466 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22525 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22526 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22585 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22586 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22645 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22646 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22705 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22706 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22765 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22766 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22825 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22826 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAATCCTGCTTATATAGCTCCTCAAGCTAAA 22885 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22886 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22942 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||| | +|||||+|||||||||||||||||| |+ Sbjct: 22943 ATCGTACCACTTTGTATTTTTAACGGCAACTCTTTGTCGAATACAAAGTATTATGATCAT 23002 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ | +||||| Sbjct: 23003 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAATAGAAACC 23062 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23063 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23122 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23123 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23182 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23183 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23242 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23243 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23302 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23303 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23362 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23363 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23422 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23423 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23482 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23483 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23542 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23543 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23602 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23603 CTGCATGATGCTTAG 23617 >OK318939 Human coronavirus OC43 strain OC43/China/19/2019, complete genome Length = 30681 E-value = 0, Score = 1879, Bitscore = 1695.55, Identities = 1091/1275 (85%), Positives = 1220/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22345 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22404 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22405 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22464 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22465 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22524 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22525 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22584 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22585 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22644 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22645 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22704 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22705 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22764 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22765 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTATATCT 22824 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22825 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22884 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22885 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23002 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23062 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23122 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23182 AAGGGTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23242 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23302 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|| ||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGCGTTTTTAGGTATGATAATATTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23422 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+ |+|||||| ||||||||||||||||+|||||||+ Sbjct: 23482 GATTTACCCATTTGTGTGTATGATTCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23542 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23602 CTGCATGATGCTTAG 23616 >MT118668 Human coronavirus OC43 strain 2018_0004, partial genome Length = 30717 E-value = 0, Score = 1879, Bitscore = 1695.55, Identities = 1091/1275 (85%), Positives = 1220/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22351 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22410 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22411 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22470 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22471 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22530 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22531 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22590 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22591 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22650 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22651 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22710 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22711 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22770 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| || |||||||+|||||||| |||||| |+|+| |+ Sbjct: 22771 CGCAGCCTTACTTTTGTTAATGTATCACATGTTTATAATGGCTCCGCACAAGCTACATCT 22830 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| || || ||+||+|| ||+||++||| | |||||++ Sbjct: 22831 TTTTGTAAATCTGGTAGTTTAGTCCTCAACAACCCTGCTTATATAGCTCCTCAAGCTAAA 22890 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || || +|||||||||+||||||+|||||||||||||||||||| Sbjct: 22891 -TCTGGGATTATTACTA--AGCTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22947 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22948 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 23007 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 | |||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 23008 ACTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23067 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23068 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23127 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23128 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23187 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23188 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23247 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23248 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23307 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23308 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23367 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23368 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23427 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23428 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23487 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23488 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23547 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23548 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23607 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23608 CTGCATGATGCTTAG 23622 >MN310476 Human coronavirus OC43 strain HCoV_OC43/Seattle/USA/SC9428/2018, complete genome Length = 30562 E-value = 0, Score = 1874, Bitscore = 1691.04, Identities = 1090/1275 (85%), Positives = 1219/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22316 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22375 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22376 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22435 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22436 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22495 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22496 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22555 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22556 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22615 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22616 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22675 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22676 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22735 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| || |||||||+|||||||| |||||| |+|+| |+ Sbjct: 22736 CGCAGCCTTACTTTTGTTAATGTATCACATGTTTATAATGGCTCCGCACAAGCTACATCT 22795 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| || || ||+||+|| ||+||++||| | |||||++ Sbjct: 22796 TTTTGTAAATCTGGTAGTTTAGTCCTCAACAACCCTGCTTATATAGCTCCTCAAGCTAAA 22855 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || || +|||||||||+||||||+|||||||||||||||||||| Sbjct: 22856 -TCTGGGATTATTACTA--AGCTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22912 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22913 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22972 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 | |||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22973 ACTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23032 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23033 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23092 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23093 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23152 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23153 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23212 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23213 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23272 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23273 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23332 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23333 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23392 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23393 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23452 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+||||| |+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23453 GATTTACCCATTTGTGTGTATCATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23512 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23513 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23572 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23573 CTGCATGATGCTTAG 23587 >OL770289 Human coronavirus OC43 isolate HCoV-OC43/15-318/WA/AU/2019, partial genome Length = 30665 E-value = 0, Score = 1870, Bitscore = 1687.44, Identities = 1089/1275 (85%), Positives = 1224/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22334 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22393 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22394 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22453 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22454 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22513 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22514 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22573 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22574 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22633 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22634 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22693 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22694 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22753 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ++++++++||+|||||||| |||||| |+|+| |+ Sbjct: 22754 CGCAGCCTTACTTTTGTTAATGTATNNNNNNNNTATAATGGCTCCGCACAAGCTACATCT 22813 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+ | ||+||++||| | |||||++ Sbjct: 22814 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTTCTTATATAGCTCCTCAAGCTAAA 22873 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22874 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22930 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22931 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATCAT 22990 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22991 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23050 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23051 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23110 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23111 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23170 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23171 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23230 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23231 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23290 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23291 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23350 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23351 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23410 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23411 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23470 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23471 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23530 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 ||||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23531 GYTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23590 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23591 CTGCATGATGCTTAG 23605 >MW202339 Human coronavirus OC43 isolate OC43_S219, complete genome Length = 28861 E-value = 0, Score = 1869, Bitscore = 1686.53, Identities = 1089/1275 (85%), Positives = 1218/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22341 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22400 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||| ||||||||||||||| Sbjct: 22401 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTCTTATTTGGTGACAGT 22460 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22461 CGTTCAGATTGTAATCATATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22520 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22521 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22580 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+||| Sbjct: 22581 AGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTAT 22640 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22641 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22700 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22701 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22760 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| || |||||||+|||||||| |||||| |+|+| |+ Sbjct: 22761 CGCAGCCTTACTTTTGTTAATGTATCACATGTTTATAATGGCTCCGCACAAGCTACATCT 22820 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| || || ||+||+|| ||+||++||| | |||||++ Sbjct: 22821 TTTTGTAAATCTGGTAGTTTAGTCCTCAACAACCCTGCTTATATAGCTCCTCAAGCTAAA 22880 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || || +|||||||||+||||||+|||||||||||||||||||| Sbjct: 22881 -TCTGGGATTATTACTA--AGCTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22937 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22938 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22997 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 | |||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22998 ACTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23057 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23058 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23117 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 ||||||||||+||||||||||||||||||||+||+||||| |||||| |||++|||||| Sbjct: 23118 TCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCTATCTGTTTTAATAAGCGT 23177 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23178 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23237 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23238 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23297 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23298 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23357 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23358 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23417 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|| |||||||||++||||||+| +||| Sbjct: 23418 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGTCCCACTGCTGCTGATATTAATATCCCT 23477 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23478 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23537 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23538 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23597 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23598 CTGCATGATGCTTAG 23612 >LC687398 Human coronavirus OC43 Fukushima_H763_2019 RNA, complete genome Length = 30673 E-value = 0, Score = 1856, Bitscore = 1674.81, Identities = 1086/1275 (85%), Positives = 1214/1275 (95%), Gaps = 12/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22337 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22396 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22397 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22456 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22457 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22516 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22517 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22576 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22577 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22636 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22637 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22696 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22697 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22756 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22757 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22816 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22817 TTTTGTAAATCTGGC---------CTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22867 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| | |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22868 -TCTGGGATTATTACGA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22924 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22925 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATTAT 22984 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22985 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23044 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23045 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23104 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23105 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23164 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23165 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23224 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23225 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23284 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23285 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23344 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23345 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23404 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23405 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23464 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23465 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23524 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23525 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23584 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23585 CTGCATGATGCTTAG 23599 >MN514966 Dromedary camel coronavirus HKU23 isolate DcCoV-HKU23/camel/Nigeria/NV1097/2015, complete genome Length = 31075 E-value = 0, Score = 1855, Bitscore = 1673.91, Identities = 1084/1275 (85%), Positives = 1215/1275 (95%), Gaps = 0/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||| ||||||+||||||||||+++||||||||||+ Sbjct: 22342 ATGTTTTTGCTTCCTAGATTTGTTCTAGCTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 22401 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+|| ||||||||||||||||||||| |||||||||||||| Sbjct: 22402 AACCCTCCTACCAATGTTGTTTCACATTTAAATGGAGATTGGTTTCTATTTGGTGACAGT 22461 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|||||||| |+||||||+|| ||+||||||||+|||||||||||+ Sbjct: 22462 CGTTCAGATTGTAATCATGTTGTCACTACCAATCCTCGTAATTATTCTTATATGGACCTT 22521 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+| |||++||+ ||+||||| || +| |||||||| |||||| | |||||| Sbjct: 22522 AACCCAGCCCTATGTGATTCAGGTAAAATTTCTTCGAAAGCTGGTAACTCCTTGTTTAGG 22581 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||| ||||| ||+|||||||| ||||||||||| ||||||||+|||||+|| ||+||| Sbjct: 22582 AGTTTCCACTTCACGGATTTTTACAATTACACAGGTGAAGGTCAACAAATTATATTTTAT 22641 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+|||||| || +||||||||||||||||||+ |+||||||+||||||||| Sbjct: 22642 GAGGGTGTTAATTTTACTCCATATCATGCCTTTAAATGCACTAGTTCTGGTAGTAATGAT 22701 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22702 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22761 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+ ||+ Sbjct: 22762 CGCAGTCTTACTTTTGTTAGTGTACCATATGTTTACAATGGCTCTGCACAAGTCACTGCT 22821 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 22822 TTTTGTAAATCTGGTAGTTTAGTTCTTAATAATCCCGCCTATATTGCTCGTGAAGCTAAT 22881 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||| ||+|||||||||||||||||||| Sbjct: 22882 GTGGGGGATTATTATTATAAGGCTGAAGCTGACTTTCATCTGTCAGGTTGTGACGAGTAT 22941 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 22942 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 23001 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+|| |||||||| ||||| +| ||||++||| | || Sbjct: 23002 AGTCAATATTATTTTAATAAAGATACCGGTGTTATCTATGGCCTTAATTCCACTAAGACT 23061 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||| ||||+||||||||||| ||||||+||+||||||||||+ |||||| | Sbjct: 23062 ATTACCACTGGTCTTGATTTTAATTGTCAATATTTAGTTTTACCCTCTGGTTATTATTCA 23121 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||| ||+||||| |||||||| || ||+||+||||| ||||||||||++|||||| Sbjct: 23122 GCCATTTCTAATGAGCTGTTGTTAACAGTGCCTACGAAAGCCATCTGTCTTAGCAAGCGT 23181 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 || ||||||||+|||||||| || |||||+||+|| |||||||+||||+++|++|||||+ Sbjct: 23182 AAAGATTTTACGCCTGTACAAGTGGTTGACTCTCGTTGGAACAATGCCAGGCCTTCTGAT 23241 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+ |||| ||+|||| +||||||||||||||||| || |||||| |+||+ Sbjct: 23242 AACATGACGGCAATTGCATGTCAACTGCCGTACTGTTATTTTCGGAACTCTACTTCCAAC 23301 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||| |||||||| | || ||+|||||+||||||||||||||||||||+|||||| Sbjct: 23302 TATGTTGGTATTTATGATGTTAACCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 23361 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23362 TTGTTATATGATTCACCTTGTTTTTCACAGCAAGGTGTTTTTAGGTATAATAATGTTAGC 23421 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+| +||+||||||||||||++||||||+||+||| Sbjct: 23422 AGTGTCTGGCCTCTCTATCCCTATGGCATGTGTCCTACTGCTGCTGATATTAATACCCCT 23481 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+| ||||||||||||||+|||||||+| Sbjct: 23482 GATGTACCTATTTGTGTGTATGATCCGCTACCACTCATTTTGCTTGGCATTCTTTTGGGT 23541 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 23542 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 23601 Query: 1261 CUGCAUGAUGCUUAG 1275 |||||||||||||| Sbjct: 23602 TTGCATGATGCTTAG 23616 >MW532109 Human coronavirus OC43 strain OC43/China/12/2018, complete genome Length = 30662 E-value = 0, Score = 1847, Bitscore = 1666.7, Identities = 1085/1275 (85%), Positives = 1213/1275 (95%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22329 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22388 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22389 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22448 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+|| ||| ||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22449 CGTTCAGATTGTAATCACATTGGTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22508 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22509 AATCCTGCTCTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22568 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 22569 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 22628 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| +|| |||+||||||||| Sbjct: 22629 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAATCGTTTTGGTAGTAATGAT 22688 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22689 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22748 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22749 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22808 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22809 TTTTGTAAATCTGGTAGTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAAA 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| || |||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 -TCTGGGATTATTACTA--AGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22925 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||| |+ Sbjct: 22926 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATTAT 22985 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22986 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23045 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+|| ||||||||||+||||||||| Sbjct: 23046 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTGTACCCTCTGGTAATTATTTA 23105 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23106 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23165 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++| |||+ Sbjct: 23166 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTTTGAT 23225 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 ||||||||| |+||||| ||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 23226 AACATGACGTCGGTTGCCTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACCAAC 23285 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 |||||||||||||||||||| |||||+|| ||+|||||||| |||||||||||+|||||| Sbjct: 23286 TATGTTGGTGTTTATGATATTAATCATGGAGATGCTGGTTTCACTAGCATACTCAGTGGT 23345 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23346 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23405 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+| +|| ||| |||||++||||||+| +||| Sbjct: 23406 AGTGTCTGGCCTCTCTACCCCTATGGCAGATATCCCACTTCTGCTGATATTAATATCCCT 23465 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||| +||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23466 GATTTACCCATTTGTGTGTATGGTCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23525 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||| |+|||| ||||||||| |||||||||+|||||||| ||||||| Sbjct: 23526 GTTGCCATTGGAATTAGTGTAGTGTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23585 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23586 CTGCATGATGCTTAG 23600 >OK391229 Human coronavirus OC43 strain OC43/China/44/2019 hemagglutinin-esterase protein (HE), NS5a protein (NS5a), nucleocapsid protein (N), and N2 protein (N2) genes, complete cds Length = 30492 E-value = 0, Score = 1596, Bitscore = 1440.37, Identities = 1020/1275 (80%), Positives = 1231/1275 (96%), Gaps = 3/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+||||||||||+++|||||||| |+ Sbjct: 22330 ATGTTTTTGCTTTCTAGATTTATTCTAGTTAGCTGCATAATTGGTAGCTTAGGTTTTTAT 22389 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22390 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22449 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22450 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22509 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 22510 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 22569 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22570 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22629 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22630 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22689 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22690 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22749 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||+++++++++++++++++++++ Sbjct: 22750 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATNNNNNNNNNNNNNNNNNNNNN 22809 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +++++++++++++++++|||||| ||||||||+||+|| ||+||++||| | |||||++ Sbjct: 22810 NNNNNNNNNNNNNNNNNTTTAGTCCTTAATAACCCTGCTTATATAGCTCCTCAAGCTAA- 22868 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 | |+|||||||| ||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 22869 ATCTGGGATTATTA--CGAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 22926 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||| +|||||+|||||||||||||||||| |+ Sbjct: 22927 ATCGTACCACTTTGTATTTTTAACGGCAAGTCTTTGTCGAATACAAAGTATTATGATCAT 22986 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||+ || +||||| Sbjct: 22987 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCAACAGAAACC 23046 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+ |||||||||||||||||+||+||||||||||+||||||||| Sbjct: 23047 ATTACCACTGGTTTTGATCTTAATTGTCATTATTTAGTTTTACCCTCTGGTAATTATTTA 23106 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||| |||++|||||| Sbjct: 23107 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACGAAAGCAATCTGTTTTAATAAGCGT 23166 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 23167 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 23226 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||++++ Sbjct: 23227 AACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTATTTTCGTAATTCTACTACNNNN 23286 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ++++++++++++++++++++++++++++++++++++++++++++++++++|||+|||||| Sbjct: 23287 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCAGTGGT 23346 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 ||||||||| |+||| |+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 23347 TTGTTATATAATTCATCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATATTAGC 23406 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||||||| +||||||+| +||| Sbjct: 23407 AGTGTTTGGCCTCTCTACCCCTATGGCAGATGTCCTACTGCTGCTTATATTAATATCCCT 23466 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 ||| +|||+||||||+|||||||+||+|||||| ||||||||||||||||+|||||||+ Sbjct: 23467 GATTTACCCATTTGTGTGTATGATCCGCTACCAGTTATTTTGCTTGGCATTCTTTTGGGC 23526 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||| | ||||||||+|||||||||||||| |||||||||+|||||||| ||||||| Sbjct: 23527 GTTGCCATTGTAATTATTGTAGTTTTGTTGTTACATTTTATGGTGGATAATGTTACTAGG 23586 Query: 1261 CUGCAUGAUGCUUAG 1275 ||||||||||||||| Sbjct: 23587 CTGCATGATGCTTAG 23601 Database: nr Query=17. HE - realigned consensus sequence Length=1211 Score E Sequences producing significant alignments: (Bits) Value MW771522 Bovine coronavirus isolate 2703 hemagglutinin-ester... 1769.49 0 ALIGNMENTS >MW771522 Bovine coronavirus isolate 2703 hemagglutinin-esterase gene, partial cds Length = 1211 E-value = 0, Score = 1961, Bitscore = 1769.49, Identities = 1066/1211 (88%), Positives = 1199/1211 (99%), Gaps = 0/1211 (0%) Frame = +1 Query: 16 AGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAU 75 ||||||||+|||||||||||+||||||||||+++||||||||||+||||||||||||||| Sbjct: 1 AGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAAT 60 Query: 76 KUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAY 135 +||||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+ Sbjct: 61 GTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAAT 120 Query: 136 CAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGU 195 ||||||||||+ |||||+|||||+||||||||+|||||||||||+||+||+|||+||||| Sbjct: 121 CATGTTGTTACCACCAATCCCCGTAATTATTCTTATATGGACCTTAATCCTGCCTTGTGT 180 Query: 196 RRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACB 255 ++||+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+ Sbjct: 181 GATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACC 240 Query: 256 GAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUU 315 |||||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+|||| Sbjct: 241 GATTTTTATAATTACACAGGCGAAGGTCAGCAAATTATTTTTTATGAGGGTGTTAATTTT 300 Query: 316 ACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAU 375 ||||||+||||||||||||||||||+||+||||||+|||||||||||||||||||||||| Sbjct: 301 ACGCCTCATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAAT 360 Query: 376 AAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUU 435 ||||||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+||| Sbjct: 361 AAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTT 420 Query: 436 GUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGU 495 ||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+|||| Sbjct: 421 GTTAATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGT 480 Query: 496 AGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAU 555 |||||||||||||||||+||+||+||+||++|| ||||||++|+|++|+||||||||| Sbjct: 481 AGTTTAGTTCTTAATAACCCTGCATATATAGCTAAAGAAGCTAATTTTGGGGATTATTAT 540 Query: 556 UAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGU 615 |||||||+|||||||||+||||||+||||||||||||||||||||||||||||||||||| Sbjct: 541 TATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGT 600 Query: 616 AUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUU 675 |||||+||+||||||||+|||||+||||||||||||||||||||+||||||||||||||| Sbjct: 601 ATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTT 660 Query: 676 AAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUU 735 ||||||||+|| |||||||||||||||+||||| ++|||+|||||||||||||||||||| Sbjct: 661 AATAAAGACACCGGTGTTATTTATGGTCTCAATGCTACTCAAACCATTACCACTGGTTTT 720 Query: 736 GAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAG 795 ||+||||||||||| ||||||+||+||||||||||+||||||||||||||||||||+||| Sbjct: 721 GATTTTAATTGTCACTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAG 780 Query: 796 CUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCU 855 |||||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|| Sbjct: 781 CTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCC 840 Query: 856 GUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUU 915 ||||||||+|||||+||+||||||||||+||||+++| +|||||+|||||||||||+||| Sbjct: 841 GTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCGGTCTGATAACATGACGGCAGTT 900 Query: 916 GCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAU 975 |||||+|||| +|||||||||||||||||||||||||||||+||+||||||||||||||| Sbjct: 901 GCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTAT 960 Query: 976 GAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCA 1035 |||||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+||| Sbjct: 961 GATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCA 1020 Query: 1036 CCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUY 1095 ||+|||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+ Sbjct: 1021 CCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTC 1080 Query: 1096 UAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGU 1155 ||++|+|||||+||+||+||||| ||||||++ |||||+||+||||||++|||+|||||| Sbjct: 1081 TACCCTTATGGCAGATGCCCTACCGCTGCTGACATTAACACACCTGATGTACCTATTTGT 1140 Query: 1156 KUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUU 1215 +|||||||+||+||||||+||||||||||||||||+|||||||+||+||||||||||||| Sbjct: 1141 GTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATT 1200 Query: 1216 AUUSUAGUUUU 1226 |||+||||||| Sbjct: 1201 ATTGTAGTTTT 1211 Database: nr Query=17. HE - realigned consensus sequence Length=637 Score E Sequences producing significant alignments: (Bits) Value MG977450 Human coronavirus OC43 isolate TNP F1835_2, partial... 710.01 0 ALIGNMENTS >MG977450 Human coronavirus OC43 isolate TNP F1835_2, partial genome Length = 30503 E-value = 0, Score = 786, Bitscore = 710.01, Identities = 510/637 (80%), Positives = 596/637 (93%), Gaps = 15/637 (2%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22175 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22234 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22235 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22294 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22295 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22354 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22355 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22414 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22415 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22474 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22475 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22534 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22535 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22594 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||| ||||||||||+|||||||| |||||| |+|+| |+ Sbjct: 22595 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCCGCACAAGCTACATCT 22654 Query: 481 HUUUGUAAAUYUGGUAG------------UUUAGUUCUUAAUAAYCCYGCMUAYAUWKCU 528 +|||||||||+|||||| |||||| ||||||||+||+|| ||+||++|| Sbjct: 22655 TTTTGTAAATCTGGTAGTAAGCTTAAGAATTTAGTCCTTAATAACCCTGCTTATATAGCT 22714 Query: 529 CGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGU 588 | | |||||++ | |+||+||||| +||||+|||||||||+||+++++++++++++ Sbjct: 22715 CCTCAAGCTAA-ATCTGGGANTATTA--CNAAGGTTGAAGCTGATTTNNNNNNNNNNNNN 22771 Query: 589 UGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYG 625 +++++++++|||||||||||||||||||||||+||+| Sbjct: 22772 NNNNNNNNNTATATCGTACCACTTTGTATTTTTAACG 22808 Database: nr Query=17. HE - realigned consensus sequence Length=408 Score E Sequences producing significant alignments: (Bits) Value JF795433 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-S/N he... 609.923 9.31e-170 JF795430 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-B-O4 hem... 609.923 9.31e-170 ALIGNMENTS >JF795433 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-S/N hemagglutinin-esterase gene, partial cds Length = 409 E-value = 9.31e-170, Score = 675, Bitscore = 609.923, Identities = 362/408 (88%), Positives = 407/408 (99%), Gaps = 0/408 (0%) Frame = +1 Query: 124 UCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAY 183 |||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+||+ Sbjct: 2 TCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTTAAT 61 Query: 184 CCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGU 243 ||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||| Sbjct: 62 CCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGT 121 Query: 244 UUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAG 303 |||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||| Sbjct: 122 TTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAG 181 Query: 304 GGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUU 363 |||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||| Sbjct: 182 GGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATT 241 Query: 364 UGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGC 423 ||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||| Sbjct: 242 TGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGC 301 Query: 424 AGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUU 483 ||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|| Sbjct: 302 AGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTT 361 Query: 484 UGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGU 531 |||||||+|||||||||||||||||||||+||+||+||+||++||||| Sbjct: 362 TGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGT 409 >JF795430 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-B-O4 hemagglutinin-esterase gene, partial cds Length = 409 E-value = 9.31e-170, Score = 675, Bitscore = 609.923, Identities = 362/408 (88%), Positives = 407/408 (99%), Gaps = 0/408 (0%) Frame = +1 Query: 124 UCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAY 183 |||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+ Sbjct: 2 TCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAAT 61 Query: 184 CCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGU 243 ||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||| Sbjct: 62 CCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGT 121 Query: 244 UUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAG 303 |||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||| Sbjct: 122 TTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAG 181 Query: 304 GGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUU 363 |||+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||| Sbjct: 182 GGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATT 241 Query: 364 UGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGC 423 ||||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||| Sbjct: 242 TGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGC 301 Query: 424 AGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUU 483 ||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+|||++|| Sbjct: 302 AGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACAGCCCTT 361 Query: 484 UGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGU 531 |||||||+|||||||||||||||||||||+||+||+||+||++||||| Sbjct: 362 TGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGT 409 Database: nr Query=17. HE - realigned consensus sequence Length=1207 Score E Sequences producing significant alignments: (Bits) Value MW310545 Betacoronavirus 1 isolate 1205 hemagglutinin-estera... 1789.33 0 ALIGNMENTS >MW310545 Betacoronavirus 1 isolate 1205 hemagglutinin-esterase gene, partial cds Length = 1207 E-value = 0, Score = 1983, Bitscore = 1789.33, Identities = 1068/1207 (88%), Positives = 1201/1207 (99%), Gaps = 0/1207 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCCGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||| ||||||||||+||+||+||+||++|||||||||||++|+|++|+|||||||||||| Sbjct: 481 TTAATTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||| ++|||+||||||||||||||||||| ||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACCATTACCACTGGTTTCGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||| ||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCTAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||| ||||||+ ||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACAGCTGCTGTTATTAATACACCTGATGTACCCATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1141 TATGATCCTCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 1200 Query: 1219 SUAGUUU 1225 +|||||| Sbjct: 1201 GTAGTTT 1207 Database: nr Query=17. HE - realigned consensus sequence Length=420 Score E Sequences producing significant alignments: (Bits) Value JF795419 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-34 hem... 628.859 9.94e-176 ALIGNMENTS >JF795419 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-34 hemagglutinin-esterase gene, partial cds Length = 420 E-value = 9.94e-176, Score = 696, Bitscore = 628.859, Identities = 373/420 (88%), Positives = 419/420 (99%), Gaps = 0/420 (0%) Frame = +1 Query: 117 CAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGA 176 ||||||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||| Sbjct: 1 CAGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGA 60 Query: 177 CCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUU 236 |||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|| Sbjct: 61 CCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTT 120 Query: 237 UAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUU 296 ||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+|| Sbjct: 121 TAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTT 180 Query: 297 YUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAA 356 +|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||| Sbjct: 181 CTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAA 240 Query: 357 UGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGU 416 |||||||||||||||||||||||||||+||||||||||||+||||||||||||||||||| Sbjct: 241 TGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGT 300 Query: 417 KUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAH 476 +||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+ Sbjct: 301 GTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTAC 360 Query: 477 AGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGC 536 |||++|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||| Sbjct: 361 AGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGC 420 Database: nr Query=17. HE - realigned consensus sequence Length=423 Score E Sequences producing significant alignments: (Bits) Value JF795420 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-35 hem... 634.269 2.34e-177 ALIGNMENTS >JF795420 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-35 hemagglutinin-esterase gene, partial cds Length = 423 E-value = 2.34e-177, Score = 702, Bitscore = 634.269, Identities = 376/423 (88%), Positives = 422/423 (99%), Gaps = 0/423 (0%) Frame = +1 Query: 115 GACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUG 174 ||||||||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||| Sbjct: 1 GACAGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATG 60 Query: 175 GACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUY 234 |||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+ Sbjct: 61 GACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATT 120 Query: 235 UUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUY 294 ||||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+ Sbjct: 121 TTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATT 180 Query: 295 UUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGU 354 ||+|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||| Sbjct: 181 TTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGT 240 Query: 355 AAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCU 414 |||||||||||||||||||||||||||||+||||||||||||+||||||||||||||||| Sbjct: 241 AATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCT 300 Query: 415 GUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCK 474 ||+||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ + Sbjct: 301 GTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTT 360 Query: 475 AHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAA 534 |+|||++|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||| Sbjct: 361 ACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAA 420 Query: 535 GCU 537 ||| Sbjct: 421 GCT 423 Database: nr Query=17. HE - realigned consensus sequence Length=411 Score E Sequences producing significant alignments: (Bits) Value JQ918854 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-749 he... 615.333 2.19e-171 ALIGNMENTS >JQ918854 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-749 hemagglutinin-esterase (HE) gene, partial cds Length = 411 E-value = 2.19e-171, Score = 681, Bitscore = 615.333, Identities = 365/411 (88%), Positives = 410/411 (99%), Gaps = 0/411 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 TCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||||| Sbjct: 181 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 360 Query: 486 UAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGC 536 |||||+|||||||||||||||||||||+||+||+||+||++|||||||||| Sbjct: 361 TAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGC 411 Database: nr Query=17. HE - realigned consensus sequence Length=464 Score E Sequences producing significant alignments: (Bits) Value MW587041 Human coronavirus OC43 isolate S0229XLX ORF1ab poly... 647.794 0 ALIGNMENTS >MW587041 Human coronavirus OC43 isolate S0229XLX ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1a) genes, partial cds; ns2 (ns2), hemagglutinin-esterase (HE), surface glycoprotein (S), and ns12.9 (ns12.9) genes, complete cds; envelope protein (E) and membrane protein (M) genes, partial cds; and nucle Length = 30697 E-value = 0, Score = 717, Bitscore = 647.794, Identities = 404/464 (87%), Positives = 449/464 (96%), Gaps = 0/464 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++||||||| |+|||||||||||+ |||||||||+++|||||||| |+ Sbjct: 22348 ATGTTTTTGCTTCCTAGATTTATTCTAGTTAGCTGCGTAATTGGTAGCTTAGGTTTTTAT 22407 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+||| |||||||||||||||||||||||||||||||| Sbjct: 22408 AACCCTCCTACCAATGTTGTTTCGCATGTAAATGGAGATTGGTTTTTATTTGGTGACAGT 22467 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||| ||||||+|| |||+|||| +||||||||+|||||||||||+ Sbjct: 22468 CGTTCAGATTGTAATCATATTGTTAATATCAACCCCCATAATTATTCTTATATGGACCTT 22527 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|| +| |||++||+|||+|||||||||+|||||||||||||||||||+|| ||| Sbjct: 22528 AATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTCAGG 22587 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||| ||||||||||||||+|||||+||+||+||| Sbjct: 22588 AGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAACAAATTATTTTTTAT 22647 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+|||||||||||||||||| | +||||||+||||||||| Sbjct: 22648 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCAACCGTTCTGGTAGTAATGAT 22707 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 22708 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 22767 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUC 464 |||||+|||||+|||||||+|||| ||||||||||+|||||||| Sbjct: 22768 CGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTC 22811 Database: nr Query=17. HE - realigned consensus sequence Length=1214 Score E Sequences producing significant alignments: (Bits) Value AY771998 Murine hepatitis virus strain DVIM pp1b (ORF1b) gen... 392.617 1.30e-104 AF091734 Murine hepatitis virus strain DVIM hemagglutinin-es... 392.617 1.30e-104 ALIGNMENTS >AY771998 Murine hepatitis virus strain DVIM pp1b (ORF1b) gene, partial cds; ns2 protein (2a), hemagglutinin-esterase (HE), spike (S), 15 kD nonstructural protein, 12.6 kD nonstructural protein, small membrane protein (E), and membrane protein (M) genes, complete cds; and nucleocapsid protein (N) gene, partia Length = 10843 E-value = 1.30e-104, Score = 434, Bitscore = 392.617, Identities = 776/1214 (63%), Positives = 880/1214 (72%), Gaps = 15/1214 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+||||+|| |||||||||| || |||||| | ||||| |||||| | || || ||| Sbjct: 2431 AATGTTGTTTCACATTTAAATGATGACTGGTTTCTTTTTGGCGACAGTAGATCTGACTGT 2490 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| | ||+| || +| | |||||| +||||||||| |+||+||+| +|| Sbjct: 2491 AACCATATAAATAATCTCAGTCAGCAGAATTATAATTATATGGACATTAACCCAGAGTTG 2550 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++ |+ ||+|| || || +||||||| || || ||| |+|||| |||||||||||| Sbjct: 2551 TGTAAATCGGGCAAGATTTCTGCTAAAGCGGGTAATTCCCTCTTTAAAAGTTTTCACTTT 2610 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 ||+||||| || ||||| || || ||||| |||||+|| ||+||||| || +|||+| Sbjct: 2611 ACCGATTTCTACAATTATACTGGTGAAGGGTCCCAAATTATATTTTATGAAGGAGTTAAT 2670 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 || || |||+|| | ||||| || + |+| |||+ ||| ||| |||||| Sbjct: 2671 TTCACCCCTTATGTGGGATTTAAGTGTTTGAATAATGGTGACAATAATAGGTGGATGGGT 2730 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||||| +||||| || ||| | ||| |||| ||||| +||||| ||+|| |+ Sbjct: 2731 AATAAAGCTCGATTTTATACCCAGTTATATCAGAAGATGGCCCATTATCGGAGCCTATCT 2790 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAA---- 488 | |||+| | | || ||+|||||| ||| +|+ + |++| ||||| Sbjct: 2791 GTAATTAATATTACTTACACCTATAATGGCAGCGCAGGTCCTGTCTCTATGTGTAAGCAT 2850 Query: 489 AUY-----UGGU---AGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 ||+ |||| | ||| || || ||+||+ |+| +||++ | || | ++ Sbjct: 2851 ATTGCTAATGGTGTCACTTTGACCCTAAACAACCCTACCTTTATTGGTAAGGAGGTAAGC 2910 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + +|||||||||||| || || || |+||| +|| || || || |||| Sbjct: 2911 AAACCTGATTATTATTATGAGAGCGAGGCAAACTTTACGTTGCAGGGATGCGATGAGTTC 2970 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 || || || || ||| ||||+||+||| ||| + | ||+| || ||||||||||||+ Sbjct: 2971 ATTGTCCCCCTCTGTGTTTTTAATGGCCAGTATCTTTCTAGTAAGCTGTATTATGATGAT 3030 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 ||||| ||||| | |||| ||+||||||||| | ||||||+| ||||+ || + | | Sbjct: 3031 AGTCAGTATTACTATAATGTTGATACTGGTGTTTTATATGGTTTTAATTCAACCCTGAAC 3090 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 ||||| | ||||| ||+|| | ||| |||||||+ +|| | ||||+|||||| | Sbjct: 3091 ATTACTTCAGGTTTGGATTTAACCTGTATTTATTTAGCATTAACTCCTGGTAATTATATC 3150 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 | ||||| ||+||||| ||| | ||||| ||+ |+||||| || || || ++|| | Sbjct: 3151 TCTATTTCTAATGAGCTGTTGCTTACTGTACCCTCTAAAGCTATTTGCCTGCGTAAACCC 3210 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||| ||||| ||||| || || |||||+||+ | ||| | | | +++|++|||||+ Sbjct: 3211 AAGGCGTTTACACCTGTGCAAGTAGTTGATTCTAGATGGCATAGTAATAGGCAGTCTGAT 3270 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 || ||||| ||+ | |||||+||| || || || ||||||||||| | |||| + |+ Sbjct: 3271 AATATGACAGCTATAGCTTGTCAATTACCATATTGCTATTTTCGTAACACCACTAGTGAT 3330 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||| ||||||||||||| ||||+|| ||+|| |||||||| || || | |||| Sbjct: 3331 TATAATGGTGTTTATGATTCGCATCATGGTGATGCGGGTTTTACCAGTATTTTGGCTGGT 3390 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 | | ||| |+ |+||| | | |||||+|||| ||| |||+|+|||+|||| Sbjct: 3391 CTTATGTATAATGTTTCCTGTCTAGCCCAGCAGGGTGCATTTGTTTATAATAATGTTAGT 3450 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+ +||||| | ||++|+|||||+ ||+|| || ||||||++ ||| +| | Sbjct: 3451 AGTAGTTGGCCGCAGTATCCTTATGGACACTGTCCGACGGCTGCTAACATTG-TATTTAT 3509 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 | ++|||+ |||| |||||||+|| |||| | || ||||| || | | ||||+| Sbjct: 3510 G--GCACCTGTTTGCATGTATGACCCCTTACCTGTCATATTGCTCGGTGTATTATTGGGT 3567 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 + || || ||||||||+| ||||| |||| ||||||||| ||||| ||| ||| Sbjct: 3568 ATAGCTGTTTTAATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGA 3627 Query: 1261 CUGCAUGAUGCUUA 1274 ||||||| ||||| Sbjct: 3628 TTGCATGAGGCTTA 3641 >AF091734 Murine hepatitis virus strain DVIM hemagglutinin-esterase (HE) mRNA, complete cds Length = 1296 E-value = 1.30e-104, Score = 434, Bitscore = 392.617, Identities = 776/1214 (63%), Positives = 880/1214 (72%), Gaps = 15/1214 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+||||+|| |||||||||| || |||||| | ||||| |||||| | || || ||| Sbjct: 85 AATGTTGTTTCACATTTAAATGATGACTGGTTTCTTTTTGGCGACAGTAGATCTGACTGT 144 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| | ||+| || +| | |||||| +||||||||| |+||+||+| +|| Sbjct: 145 AACCATATAAATAATCTCAGTCAGCAGAATTATAATTATATGGACATTAACCCAGAGTTG 204 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++ |+ ||+|| || || +||||||| || || ||| |+|||| |||||||||||| Sbjct: 205 TGTAAATCGGGCAAGATTTCTGCTAAAGCGGGTAATTCCCTCTTTAAAAGTTTTCACTTT 264 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 ||+||||| || ||||| || || ||||| |||||+|| ||+||||| || +|||+| Sbjct: 265 ACCGATTTCTACAATTATACTGGTGAAGGGTCCCAAATTATATTTTATGAAGGAGTTAAT 324 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 || || |||+|| | ||||| || + |+| |||+ ||| ||| |||||| Sbjct: 325 TTCACCCCTTATGTGGGATTTAAGTGTTTGAATAATGGTGACAATAATAGGTGGATGGGT 384 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||||| +||||| || ||| | ||| |||| ||||| +||||| ||+|| |+ Sbjct: 385 AATAAAGCTCGATTTTATACCCAGTTATATCAGAAGATGGCCCATTATCGGAGCCTATCT 444 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAA---- 488 | |||+| | | || ||+|||||| ||| +|+ + |++| ||||| Sbjct: 445 GTAATTAATATTACTTACACCTATAATGGCAGCGCAGGTCCTGTCTCTATGTGTAAGCAT 504 Query: 489 AUY-----UGGU---AGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 ||+ |||| | ||| || || ||+||+ |+| +||++ | || | ++ Sbjct: 505 ATTGCTAATGGTGTCACTTTGACCCTAAACAACCCTACCTTTATTGGTAAGGAGGTAAGC 564 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 + +|||||||||||| || || || |+||| +|| || || || |||| Sbjct: 565 AAACCTGATTATTATTATGAGAGCGAGGCAAACTTTACGTTGCAGGGATGCGATGAGTTC 624 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 || || || || ||| ||||+||+||| ||| + | ||+| || ||||||||||||+ Sbjct: 625 ATTGTCCCCCTCTGTGTTTTTAATGGCCAGTATCTTTCTAGTAAGCTGTATTATGATGAT 684 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 ||||| ||||| | |||| ||+||||||||| | ||||||+| ||||+ || + | | Sbjct: 685 AGTCAGTATTACTATAATGTTGATACTGGTGTTTTATATGGTTTTAATTCAACCCTGAAC 744 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 ||||| | ||||| ||+|| | ||| |||||||+ +|| | ||||+|||||| | Sbjct: 745 ATTACTTCAGGTTTGGATTTAACCTGTATTTATTTAGCATTAACTCCTGGTAATTATATC 804 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 | ||||| ||+||||| ||| | ||||| ||+ |+||||| || || || ++|| | Sbjct: 805 TCTATTTCTAATGAGCTGTTGCTTACTGTACCCTCTAAAGCTATTTGCCTGCGTAAACCC 864 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||| ||||| ||||| || || |||||+||+ | ||| | | | +++|++|||||+ Sbjct: 865 AAGGCGTTTACACCTGTGCAAGTAGTTGATTCTAGATGGCATAGTAATAGGCAGTCTGAT 924 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 || ||||| ||+ | |||||+||| || || || ||||||||||| | |||| + |+ Sbjct: 925 AATATGACAGCTATAGCTTGTCAATTACCATATTGCTATTTTCGTAACACCACTAGTGAT 984 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||| ||||||||||||| ||||+|| ||+|| |||||||| || || | |||| Sbjct: 985 TATAATGGTGTTTATGATTCGCATCATGGTGATGCGGGTTTTACCAGTATTTTGGCTGGT 1044 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 | | ||| |+ |+||| | | |||||+|||| ||| |||+|+|||+|||| Sbjct: 1045 CTTATGTATAATGTTTCCTGTCTAGCCCAGCAGGGTGCATTTGTTTATAATAATGTTAGT 1104 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+ +||||| | ||++|+|||||+ ||+|| || ||||||++ ||| +| | Sbjct: 1105 AGTAGTTGGCCGCAGTATCCTTATGGACACTGTCCGACGGCTGCTAACATTG-TATTTAT 1163 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 | ++|||+ |||| |||||||+|| |||| | || ||||| || | | ||||+| Sbjct: 1164 G--GCACCTGTTTGCATGTATGACCCCTTACCTGTCATATTGCTCGGTGTATTATTGGGT 1221 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 + || || ||||||||+| ||||| |||| ||||||||| ||||| ||| ||| Sbjct: 1222 ATAGCTGTTTTAATTATTGTGTTTTTGATGTTTTATTTTATGACGGATAGCGGTGTTAGA 1281 Query: 1261 CUGCAUGAUGCUUA 1274 ||||||| ||||| Sbjct: 1282 TTGCATGAGGCTTA 1295 Database: nr Query=17. HE - realigned consensus sequence Length=1206 Score E Sequences producing significant alignments: (Bits) Value KF294371 Longquan Rl rat coronavirus isolate Longquan-370 or... 458.44 3.71e-124 ALIGNMENTS >KF294371 Longquan Rl rat coronavirus isolate Longquan-370 orf1ab polyprotein gene, partial cds; and hemagglutinin-esterase, spike protein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds Length = 30679 E-value = 3.71e-124, Score = 507, Bitscore = 458.44, Identities = 787/1206 (65%), Positives = 889/1206 (73%), Gaps = 23/1206 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+| ||+|| ||||| |||| |||||||| |||||||| ||||| ||+ || ||| Sbjct: 22024 AATGTAGTTTCACATTTTAATGACGATTGGTTCTTATTTGGCGACAGCCGTAGTGACTGT 22083 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| | ||| | | ||| ||| |||||||| | |+||+ | +|| Sbjct: 22084 AACCATTT-------ACCTAAC-----AATCGTTCGTATATGGATTTGGATCCCTCTCTG 22131 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++||+ ||+|| ||||| +|||| ||||| ||||||||+|||||||| ||||| ||| Sbjct: 22132 TGTGATTCAGGTAAGATATCTTCTAAGGCTGGTAACTCCATCTTTAGGAGCTTTCATTTT 22191 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 ||+|||||||| ||||||||||| || ||| | |||||+||+||+||||| |||+| |+| Sbjct: 22192 ACTGATTTTTACAATTACACAGGAGAGGGTAATCAAATTATTTTTTATGAAGGTGTCAAT 22251 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 ||||| || +||||||||||||| ||||+ + ||||| ||||||| | | ||||| || Sbjct: 22252 TTTACCCCGCATCATGCCTTTAAGTGCACTGCATCTGGAAGTAATGTTGTGTGGATTCAA 22311 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||| || +|||||| | | | ||||| | |||| | +||| | | || ||+ Sbjct: 22312 AATAAGGGTAGTTTTTACCATAAATTGTATAATAGTATGTCCCATTATAGGACGCTCACT 22371 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYU 492 |||| |+||| || ||| ||+ ||| || ||+|+|+ |++| ||||| | Sbjct: 22372 ATTGTAAATGTTCCCTATTCATATGGTGGTCAAGCTAAACCTACCACCATGTGTAAGAGT 22431 Query: 493 GGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAU 552 ||| |||| |||||| ||+||+||+| +||++|| || | | +|+|++ |||||| Sbjct: 22432 GGTTCTTTAACTCTTAACAACCCTGCCTTTATTGCTAAGGAGGTTGGTGTTAACGATTAT 22491 Query: 553 UAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUU 612 ||||| || ||| ||| |+||| |+| | |||||||| |||||||| || |||||| Sbjct: 22492 TATTACAAAAGTGAGGCTAATTTTACTCTCACTGGTTGTGATGAGTATATAGTCCCACTT 22551 Query: 613 UGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAU 672 ||||||||+||+|| || ||+ | | | | |||||||||||+||||||||||| Sbjct: 22552 TGTATTTTTAATGGAAAATTTCTTTTCCACCGGCATTATTATGATGATAGTCAATATTA- 22610 Query: 673 UUUAAUAAAGAYACU-GGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCA---C 728 | ||||| ||+||| |||||||||||||| +| ||||++|| | | | | | | Sbjct: 22611 TATAATATGGATACTGGGTGTTATTTATGGCTTTAATTCTAC---ATCGAGTGCTAGTGT 22667 Query: 729 UGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUC 788 |||| ||||+|| | ||| | ||||| |+| || ||+ || ||||||||| Sbjct: 22668 TGGTCTTGATTTAGAATGTAAGTATTTTAATCTCAAATCAGGCTCCTACAAAGCCATTTC 22727 Query: 789 AAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUU 848 |+|||||| |||| ||| | ||+| +|| || || |||||||++||| |||| || Sbjct: 22728 TTATGAGCTACTGTTGACTATACCTATTAAGGCTATTTGTCTTAACAAGGCAAAGGCGTT 22787 Query: 849 UACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGAC 908 | ||||| || ||+|||||+||+ | ||||| | | ++ ++|||||+|| | || Sbjct: 22788 TGTACCTGTCCAAGTCGTTGATTCCAGATGGAATAGCGGTCGTGTTTCTGATAATAAAAC 22847 Query: 909 GGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGG 968 ||+| |||||+ || +|| | || || ||||||||| ||| +||+|| |||| Sbjct: 22848 TGCTGAAGCTTGTAAATTGCCCTTTTGCTACTTTCGTAATAGCACTGGTAATTACCTTGG 22907 Query: 969 UGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUA 1028 |||||||| |||||+|| ||+||||| ||||| ||||| | ||||||||||| Sbjct: 22908 CAGGTATGATATAAATCATGGCGATGCTGGATTTACCAGCATTTTGTCGGGTTTGTTATA 22967 Query: 1029 UGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUG 1088 |+ ||+||| | | ||+|||| |||| |||+|+|||+||| || |+|+|| Sbjct: 22968 CAATGTGCCTTGTATAGCCTTTCAGGGTGCTTTTTATTATGATAATGTTACCACTGTCTG 23027 Query: 1089 GCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACC 1148 |||| | + +| |||+ ||+||||| || ||++|||| | + | ||++||| Sbjct: 23028 GCCTTCGTCTGGTTCTGGACACTGTCCTACAGCGTCTAATATT---ATCGTTAATATACC 23084 Query: 1149 YAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGU 1208 + | || + |||||+||+ | || +| ||||||||||| ||+ | || |+| + || || Sbjct: 23085 TGTCTGCGCATATGATCCTTTGCCCATCATTTTGCTTGGTATTTTGTTAGGTATAGCAGT 23144 Query: 1209 CAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGA 1268 | ||||| +| ||||| |||| |||||| | |+ ||||||||| |||||| ||||| Sbjct: 23145 GCTTATTATAGTCTTTTTGATGTTTTATTTTTTAGTTGATAATGGTGTTAGGCTTCATGA 23204 Query: 1269 UGCUUA 1274 ||||| Sbjct: 23205 AGCTTA 23210 Database: nr Query=17. HE - realigned consensus sequence Length=1221 Score E Sequences producing significant alignments: (Bits) Value MW310550 Betacoronavirus 1 isolate 2182 hemagglutinin-estera... 1805.56 0 ALIGNMENTS >MW310550 Betacoronavirus 1 isolate 2182 hemagglutinin-esterase gene, partial cds Length = 1221 E-value = 0, Score = 2001, Bitscore = 1805.56, Identities = 1080/1221 (88%), Positives = 1213/1221 (99%), Gaps = 0/1221 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+||||||||| |+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCAGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAATCCTGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAATGCACCACTTCTGGCAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|| ||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTAAAGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+|| |||||||||||||||+||||| ++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACCGGTGTTATTTATGGTCTCAATGCTACTGAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++| +|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCGGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTATCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+||||||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATA 1200 Query: 1219 SUAGUUUUGUUGUUAUAUUUU 1239 +|||||||||||||||||||| Sbjct: 1201 GTAGTTTTGTTGTTATATTTT 1221 Database: nr Query=17. HE - realigned consensus sequence Length=1273 Score E Sequences producing significant alignments: (Bits) Value MZ825081 Bovine coronavirus isolate KCD GJ1 2020 hemagglutin... 1903.84 0 ALIGNMENTS >MZ825081 Bovine coronavirus isolate KCD GJ1 2020 hemagglutinin-esterase protein gene, partial cds Length = 1273 E-value = 0, Score = 2110, Bitscore = 1903.84, Identities = 1131/1273 (88%), Positives = 1269/1273 (99%), Gaps = 0/1273 (0%) Frame = +1 Query: 3 GKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAA 62 |+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+|| Sbjct: 1 GTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGACAA 60 Query: 63 CCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCG 122 |||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||||| Sbjct: 61 CCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCG 120 Query: 123 YUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAA 182 +|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+|| Sbjct: 121 TTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAA 180 Query: 183 YCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAG 242 +||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||||| Sbjct: 181 TCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAG 240 Query: 243 UUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGA 302 ||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||||| Sbjct: 241 TTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGA 300 Query: 303 GGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAU 362 ||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||||| Sbjct: 301 GGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATAT 360 Query: 363 UUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCG 422 |||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||||| Sbjct: 361 TTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCG 420 Query: 423 CAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHU 482 |||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++| Sbjct: 421 CAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCT 480 Query: 483 UUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKU 542 ||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++|+| Sbjct: 481 TTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTT 540 Query: 543 DRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAU 602 ++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||||| Sbjct: 541 TGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTATAT 600 Query: 603 CGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAG 662 ||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+|| Sbjct: 601 CGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAG 660 Query: 663 UCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAU 722 ||||| |||||||||||||||+||||| ||||||||||||+||||||++|||+||||||| Sbjct: 661 TCAATTTTATTTTAATAAAGACACTGGGGTTATTTATGGTCTCAATTCTACTGAAACCAT 720 Query: 723 UACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGC 782 |||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||||| Sbjct: 721 TACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGC 780 Query: 783 CAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAA 842 |||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||||| Sbjct: 781 CATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAA 840 Query: 843 GGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAA 902 |||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+|| Sbjct: 841 GGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGATAA 900 Query: 903 CAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUA 962 |||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+|| Sbjct: 901 CATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTA 960 Query: 963 UGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUU 1022 ||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||||| Sbjct: 961 TGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTT 1020 Query: 1023 GUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAG 1082 |||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||||| Sbjct: 1021 GTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGCAG 1080 Query: 1083 URUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGA 1142 |+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||||| Sbjct: 1081 TGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGA 1140 Query: 1143 URYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGY 1202 |++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+||+ Sbjct: 1141 TGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGT 1200 Query: 1203 UGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCU 1262 ||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||||| Sbjct: 1201 TGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGGCT 1260 Query: 1263 GCAUGAUGCUUAG 1275 ||||||||||||| Sbjct: 1261 GCATGATGCTTAG 1273 Database: nr Query=17. HE - realigned consensus sequence Length=413 Score E Sequences producing significant alignments: (Bits) Value JF345141 Betacoronavirus 1 strain cow/Brazil/2001/USP-03 hem... 620.743 5.15e-173 JF795428 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-729 he... 616.235 6.27e-172 ALIGNMENTS >JF345141 Betacoronavirus 1 strain cow/Brazil/2001/USP-03 hemagglutinin-esterase gene, partial cds Length = 413 E-value = 5.15e-173, Score = 687, Bitscore = 620.743, Identities = 367/413 (88%), Positives = 413/413 (100%), Gaps = 0/413 (0%) Frame = +1 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 60 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 61 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 120 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 121 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 180 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 181 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 240 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 241 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 300 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 301 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 360 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGA 533 +|||||||||+|||||||||||||||||||||+||+||+||+||++||||||| Sbjct: 361 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGA 413 >JF795428 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-729 hemagglutinin-esterase gene, partial cds Length = 413 E-value = 6.27e-172, Score = 682, Bitscore = 616.235, Identities = 366/413 (88%), Positives = 412/413 (99%), Gaps = 0/413 (0%) Frame = +1 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+ Sbjct: 1 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTT 60 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 61 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 120 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 121 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 180 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 181 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 240 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 241 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 300 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 301 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 360 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGA 533 +|||||||||+|||||||||||||||||||||+||+||+||+||++||||||| Sbjct: 361 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGA 413 Database: nr Query=17. HE - realigned consensus sequence Length=1239 Score E Sequences producing significant alignments: (Bits) Value MT430884 Apodemus peninsulae coronavirus, complete genome 482.786 9.33e-132 ALIGNMENTS >MT430884 Apodemus peninsulae coronavirus, complete genome Length = 31270 E-value = 9.33e-132, Score = 534, Bitscore = 482.786, Identities = 813/1239 (65%), Positives = 918/1239 (74%), Gaps = 8/1239 (0%) Frame = +1 Query: 41 UUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUU 100 ||||||++ ||||||||||+|| ||||| ||||| +| ||+||+||| | |||| |||| Sbjct: 22557 TTGGTAGTATAGGTTTTGAAAATCCTCCCACCAACGTGGTTTCTCATGTTAATGATGATT 22616 Query: 101 GGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYA 160 ||||||| |||||||||||||| || |||||+||| || ||+|| |||+|| | Sbjct: 22617 GGTTTTTGTTTGGTGACAGTCGGAGTGACTGTAACCATATTAATAATATCAATCCTAAAA 22676 Query: 161 AUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAG 220 |||||||+|||||||||||+ |+||+ | +|||||++||+ || |||||||| +|||| | Sbjct: 22677 ATTATTCTTATATGGACCTTGACCCATCTTTGTGTGATTCGGGAAAAATATCTTCTAAGG 22736 Query: 221 CUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAG 280 |||| || |||||+|||||||||||||| ||| |+|||||||| ||||| || |||| Sbjct: 22737 CTGGTAATTCCATCTTTAGGAGTTTTCATTTTTCCGATTTTTACAATTATCAGGGTGAAG 22796 Query: 281 GUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCA 340 | | ||||| || ||+||||| || +|||+|||| | || ||||| |||||||| | Sbjct: 22797 GGAACCAAATAATATTCTATGAAGGCGTTAATTTTTCACCGAGTCATGGGTTTAAATGTA 22856 Query: 341 BCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUU 400 +||+ || ||+ ||||| ||||||||| | || ||||| +||||| || +| | Sbjct: 22857 CCACGTCCGGTGATAATGGTATTTGGATAAATAACAAAGGTAAGTTTTATGAGCAAGTGT 22916 Query: 401 AUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUG 460 ||| ||| ||||| | ||||| |+|| | | | |+||| || ||||| ||+ || Sbjct: 22917 ATAGGAAGATGGCCATCTATCGAGGCCTCTCCATAATAACTGTTCCTTATGTGTATGTTG 22976 Query: 461 GCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMU 520 | | ||| | |+ |++| || || ||| ||| | ||||||||+|| ||+| Sbjct: 22977 GTGCGGCAACTGCAACTTCTATCTGCAAGAGTGGCAGTCTGACCCTTAATAATCCAGCCT 23036 Query: 521 AYAUW-KCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAU 579 +||+ + | |||| ++|+|++ + |||||| ||||| |+ || ||| |+||| | Sbjct: 23037 CTATACGAAAGGAAAGC-AGTGTTATTAATTATTTTTATACAGCAGAGGCTAATTTTACT 23095 Query: 580 YUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCK 639 +| |||| || || |||||||| || || | ||||||| +| +|| | |||+ | |+ Sbjct: 23096 CTCGCAGGCTGCGATGAGTATATAGTTCCTTTGTGTATTTATACTGGTATGTTCCTAGCT 23155 Query: 640 AAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAU 699 | || ||| ||||+|| || || |||| || | | + | || | ||||| Sbjct: 23156 TCAGGCACTTACTATAATGATAGCCAGTACTATTATAGTTATAGTTCGGGAGAATTTTAT 23215 Query: 700 GGUYUCAAUUYYACUSAAACCAUUA--CCACUGGUUUUGAYUUUAAUUGUCAUUAU-UUA 756 || + || + || +| || | | |||| ||||+| | || || ||| ||| Sbjct: 23216 GGCCGTAA--CAACACAGTTGATAAAGCTACTGTAGTTGATTACGAGTGCCAATATCTTA 23273 Query: 757 SUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACK 816 + | | || ||||| | |||| | | | || ||+ || | | | || |||||+||+ Sbjct: 23274 CCT-TGCCTTCTGGAATTTATAAATCTGTCTCCAATCAGTTGCTTCTTACAGTTCCTACG 23332 Query: 817 AAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGG 876 || ||||||||||| | |||| ||| |||||+|| || |||||+|| ||+||+|| Sbjct: 23333 AAGGCAATCTGTCTGACAAAGCCCAAGAGCTTTACGCCAGTTCAGGTTGTCGATTCACGT 23392 Query: 877 UGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGU 936 |||||| +||||+++ + |||||+|||| || ||+| || ||+||| +|| || || Sbjct: 23393 TGGAACCATGCCAGGACATCTGATAACAAAACAGCAGAGGCATGTCAATTGCCTTATTGC 23452 Query: 937 UAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCU 996 ||||||||||||||||| || |+||||||||| ||||||||| || ||+|| ||+| | Sbjct: 23453 TATTTTCGTAATTCTACCACAGATTATGTTGGTAGTTATGATATTAACCATGGCGATGTT 23512 Query: 997 GGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGU 1056 || ||| ||| ||| ||+| ||||| ||| |+ |||| |||||+ | ||||+||| Sbjct: 23513 GGATTTTCTAACATCCTCAAGGGTTTAACTTATAACGCACCATGTTTTGCTAAGCAGGGT 23572 Query: 1057 GUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCU 1116 || |||| ||||+|+|||+| || |||+| ||||| +||+ |+|||||+ +||+|| Sbjct: 23573 GTGTTTATGTATAATAATGTCAGTAGTGTATGGCCCGCCTATGCTTATGGCGAGTGCCCC 23632 Query: 1117 ACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUU 1176 |||||| | ++||| ||+| + || + ||+ ||||| |||||+||+||||| || Sbjct: 23633 ACTGCTTCCAATATAAATATAAATGGATTTCCCGTTTGTAACTATGATCCGCTACCTGTT 23692 Query: 1177 AUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAU 1236 || |||||||||||+ | | |+ + ||||| |||| |||+| |||||| | |||||| Sbjct: 23693 ATATTGCTTGGCATTTTGCTTGGAATAGCGGTTATAACCATTGTGGTTTTGCTTTTATAT 23752 Query: 1237 UUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 || | |+ |||||||| |||||||| |||||||| ||| Sbjct: 23753 TTCCTTGTAGATAATGGCACTAGGCTCCATGATGCGTAG 23791 Database: nr Query=17. HE - realigned consensus sequence Length=1205 Score E Sequences producing significant alignments: (Bits) Value MH687970 Betacoronavirus sp. strain VZ_BetaCoV_20724_34_c12,... 526.067 8.73e-145 ALIGNMENTS >MH687970 Betacoronavirus sp. strain VZ_BetaCoV_20724_34_c12, complete genome Length = 31038 E-value = 8.73e-145, Score = 582, Bitscore = 526.067, Identities = 799/1205 (66%), Positives = 903/1205 (74%), Gaps = 21/1205 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+| ||+||+||||| |||| |||||||| |||||||||||||||||+ | || ||| Sbjct: 22406 AATGTAGTTTCTCATTTTAATGATGATTGGTTCTTATTTGGTGACAGTCGTACTGACTGT 22465 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| +|||| | | ||| | +|||||||| ||+ |+||+ | +|| Sbjct: 22466 AACCAT-------CTACCGAAC-----AATCTTAGTTATATGGATCTTGATCCCTCGCTG 22513 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++ |+|||+||||| || +|||| ||||| || |||||+|||||||||||||| ||| Sbjct: 22514 TGTAAATCTGGTAAAATTTCTTCTAAGGCTGGTAATTCCATTTTTAGGAGTTTTCATTTT 22573 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 || || ||||||||||||||||| || ||| | |||||+|| ||+||||| || +| |+| Sbjct: 22574 ACAGACTTTTATAATTACACAGGTGAGGGTAATCAAATCATATTTTATGAAGGAGTCAAT 22633 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 ||||| || +| ||||| ||||| ||||+ + |||||+||||||||| | ||||| | Sbjct: 22634 TTTACACCACACCATGCTTTTAAGTGCACTGCATCTGGCAGTAATGATGTGTGGATTGAA 22693 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||| || +|||||| | | | ||||| | |||||| | | | | |||||+ Sbjct: 22694 AATAAGGGTAAGTTTTACCATAATTTGTATAATAGTATGGCCAACTTTAGAATGCTTACT 22753 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYU 492 || |||+||| || || | ||+ ||| || | +| |+ |++| ||||| | Sbjct: 22754 ATTATTAATGTGCCTTACATCTATGGTGGTCAAGCTAAGCCCACTTCCATGTGTAAGAGT 22813 Query: 493 GGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAU 552 ||||| ||| |||||| ||+||+| +| +||++| |||| +|+|++ +|||||| Sbjct: 22814 GGTAGCTTAAATCTTAACAACCCTGTCTTTATAGCAAAAGAAGTGGGTGTTAATGATTAT 22873 Query: 553 UAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUU 612 ||||||||| ||| ||| |+||| |+| || || ||||| |||||||| || |||||| Sbjct: 22874 TATTATAAGAGTGAGGCTAATTTTACTCTATCTGGCTGTGATGAGTATATAGTGCCACTT 22933 Query: 613 UGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAU 672 ||||||||+||+||||||||+||||| | ||||||||||||||+||||| |||||| Sbjct: 22934 TGTATTTTTAATGGCAAGTTTTTGTCCACAGGTAAGTATTATGATGATAGTCAGTATTAT 22993 Query: 673 UUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYA---CUSAAACCAUUACCACU 729 | ||||| ||+||||||||| | ||||| +| || |++| | +| ||| | | | Sbjct: 22994 TATAATATTGATACTGGTGTTGTCTATGGGTTTAACTCTACGTCGCAGACC---TCAAAT 23050 Query: 730 GGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCA 789 ||| ||||+|| | ||| | |||||| |+| |||||+ ||| | | ||||| Sbjct: 23051 GGTCTTGATTTGGAGTGTAAATATTTAAATCTTAAATCTGGCTCCTATAAATCTATTTCT 23110 Query: 790 AAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUU 849 ||+||||| || | | | ||+| +||||| || || ||||++|| ||||||||| Sbjct: 23111 AATGAGCTGCTGCTTTCCATACCTATTAAAGCCATTTGCCTTAATAATGCAAAGGATTTT 23170 Query: 850 ACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACG 909 | +||||| || ||+|||||+||+ | |||||||+||| ++ + |||||+|| | || Sbjct: 23171 ATGCCTGTCCAAGTTGTTGATTCCAGATGGAACAATGCTCGTGTCTCTGATAATAAAACC 23230 Query: 910 GCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGU 969 |+| || ||+||| |||| |||||||||||| ||| | || +||+||||| || Sbjct: 23231 TCTGAGGCATGTCAATTACCGTTCTGTTATTTTCGCAATAGCAGTAGTAATTATGTAGGC 23290 Query: 970 GUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAU 1029 |||||||| |||||+|| ||+|| |||||||||||||| || |||||| || ||| Sbjct: 23291 AGGTATGATATAAATCATGGCGATGCAGGTTTTACTAGCATTCTAGCTGGTTTATTGTAT 23350 Query: 1030 GAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGG 1089 |+ || ||| |+ | ||+|| | ||| |||+|+|||+||| | |+|+||| Sbjct: 23351 AATGTGCCATGTATTGCTGTACAGGGCGCCTTTTATTATGATAATGTTACTACTGTTTGG 23410 Query: 1090 CCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCY 1149 ||| | +|+| ||| +||+||||| || ||++|||| | + | ||++|||+ Sbjct: 23411 CCTTTGCTGCCTTCTGGTCAGTGCCCTACAGCATCTAATATT---ATATTTAATGTACCT 23467 Query: 1150 AUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUC 1209 ||||||+ ||||||+||+ | || +| |||||| | || || | || |+| + || || Sbjct: 23468 ATTTGTTCGTATGATCCGTTGCCGATCATTTTGTTAGGTATATTGTTAGGTATAGCAGTG 23527 Query: 1210 AUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAU 1269 | ||||||+| ||||| | | ||||||| |+|||||||||| |||||| ||||| Sbjct: 23528 CTTATTATTGTCTTTTTGATTCTTTATTTTACAGTGGATAATGGTGTTAGGCTTCATGAA 23587 Query: 1270 GCUUA 1274 ||||| Sbjct: 23588 GCTTA 23592 Database: nr Query=17. HE - realigned consensus sequence Length=123 Score E Sequences producing significant alignments: (Bits) Value OK391236 Human coronavirus OC43 strain OC43/China/42_6/2019 ... 169.901 2.68e-37 ALIGNMENTS >OK391236 Human coronavirus OC43 strain OC43/China/42_6/2019 hemagglutinin-esterase protein (HE) gene, partial cds Length = 123 E-value = 2.68e-37, Score = 187, Bitscore = 169.901, Identities = 106/123 (86%), Positives = 119/123 (96%), Gaps = 0/123 (0%) Frame = +1 Query: 166 UCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGC 225 ||+|||||||||||+||+||+|| +| |||++||+|||+|||||||||+||||||||||| Sbjct: 1 TCTTATATGGACCTTAATCCTGCTTTATGTGATTCTGGTAAAATATCATCTAAAGCTGGC 60 Query: 226 AACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCAR 285 ||||||||+|| |||||||||||||||||+|||||||||||||| ||||||||||||||+ Sbjct: 61 AACTCCATTTTCAGGAGTTTTCACTTTACCGATTTTTATAATTATACAGGCGAAGGTCAA 120 Query: 286 CAA 288 ||| Sbjct: 121 CAA 123 Database: nr Query=17. HE - realigned consensus sequence Length=395 Score E Sequences producing significant alignments: (Bits) Value JF345131 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B3 he... 587.381 3.04e-163 ALIGNMENTS >JF345131 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B3 hemagglutinin-esterase gene, partial cds Length = 398 E-value = 3.04e-163, Score = 650, Bitscore = 587.381, Identities = 350/395 (88%), Positives = 393/395 (99%), Gaps = 0/395 (0%) Frame = +1 Query: 130 UGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCC 189 |||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+||+||| Sbjct: 1 TGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAATCCTGCC 60 Query: 190 YUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCAC 249 +|||||++||+|||+||||| |||+|||||||||||||||||||+||||||||||||||| Sbjct: 61 TTGTGTGATTCTGGCAAAATTTCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCAC 120 Query: 250 UUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUU 309 |||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||||+|| Sbjct: 121 TTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGGTGTT 180 Query: 310 ARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUG 369 |+||||||||||+||||||||||||||||||+||+||||||+|||||||| ||||||||| Sbjct: 181 AATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGACATTTGGATG 240 Query: 370 CAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUU 429 ||||||||||||||+||||||||||||+|||||||||||||||||||+||||||||+||| Sbjct: 241 CAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTT 300 Query: 430 ACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAA 489 ||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||| Sbjct: 301 ACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTGTAAA 360 Query: 490 UYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 |+|||||||||||||||||||||+||+||+||+|| Sbjct: 361 TCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 395 Database: nr Query=17. HE - realigned consensus sequence Length=1270 Score E Sequences producing significant alignments: (Bits) Value MZ825084 Bovine coronavirus isolate KCD GC 2020 hemagglutini... 1889.41 0 ALIGNMENTS >MZ825084 Bovine coronavirus isolate KCD GC 2020 hemagglutinin-esterase protein gene, partial cds Length = 1270 E-value = 0, Score = 2094, Bitscore = 1889.41, Identities = 1126/1270 (88%), Positives = 1264/1270 (99%), Gaps = 0/1270 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|| ||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCTGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTAAAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||| ||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCCATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUG 1270 ||||| |||| Sbjct: 1261 CTGCAGGATG 1270 Database: nr Query=17. HE - realigned consensus sequence Length=640 Score E Sequences producing significant alignments: (Bits) Value KF530062 Human coronavirus OC43 strain OC43/human/USA/952-23... 893.052 0 ALIGNMENTS >KF530062 Human coronavirus OC43 strain OC43/human/USA/952-23/1995, partial genome Length = 30554 E-value = 0, Score = 989, Bitscore = 893.052, Identities = 556/640 (86%), Positives = 621/640 (97%), Gaps = 0/640 (0%) Frame = +1 Query: 636 GUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAU 695 |||+|||||||||||||||||| |+|||||||||||| ||||||||||+||||||||||| Sbjct: 22947 GTCGAATACAAAGTATTATGATTATAGTCAATATTATCTTAATAAAGACACTGGTGTTAT 23006 Query: 696 UUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUU 755 |||||||+||||||++|| +||||||||||||||||||||||+||||||||||||||||| Sbjct: 23007 TTATGGTCTCAATTCTACAGAAACCATTACCACTGGTTTTGATTTTAATTGTCATTATTT 23066 Query: 756 ASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYAC 815 |+||+||||||||||+||||||||||||||||||||+|||||||||||||||||||| || Sbjct: 23067 AGTTTTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCAAC 23126 Query: 816 KAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCG 875 +||||||||||||||||++|||||||||||||||||+|||||||||||+|||||+||+|| Sbjct: 23127 GAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCGCG 23186 Query: 876 GUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUG 935 ||||||||+||||+++|++|||||+|||||||||||+||||||||+|||||+|||||||| Sbjct: 23187 GTGGAACAATGCCAGGCAGTCTGATAACATGACGGCGGTTGCTTGCCAACCTCCGTACTG 23246 Query: 936 UUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGC 995 ||||||||| |||||||||||+||+|||||||||||||||||||| |||||+|||||+|| Sbjct: 23247 TTATTTTCGCAATTCTACTACCAACTATGTTGGTGTTTATGATATTAATCATGGGGATGC 23306 Query: 996 UGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGG 1055 ||||||||||||||||||+|||||||| |||||| |+ ||||+|||||+||+|||||+|| Sbjct: 23307 TGGTTTTACTAGCATACTCAGTGGTTTATTATATAATGCACCTTGTTTTTCACAGCAAGG 23366 Query: 1056 UGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCC 1115 ||||||||||||+|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|| Sbjct: 23367 CGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGTCC 23426 Query: 1116 UACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMU 1175 ||||||||||++||||||+| +|||||| +|||+||||||+|| ||||+||+|||||| | Sbjct: 23427 TACTGCTGCTGATATTAATATCCCTGATTTACCCATTTGTGTGCATGACCCGCTACCAGT 23486 Query: 1176 UAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUA 1235 |||||||||||||||+|||||||+ |+|||| | ||||||||+|||||||||||||||| Sbjct: 23487 TATTTTGCTTGGCATTCTTTTGGGCGTTGCGATTGTAATTATTGTAGTTTTGTTGTTATA 23546 Query: 1236 UUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||||||+|||||||| |||||||||||||||||||||| Sbjct: 23547 TTTTATGGTGGATAATGTTACTAGGCTGCATGATGCTTAG 23586 Database: nr Query=17. HE - realigned consensus sequence Length=1211 Score E Sequences producing significant alignments: (Bits) Value MW310541 Betacoronavirus 1 isolate 2408 hemagglutinin-estera... 1814.57 0 MW310551 Betacoronavirus 1 isolate 1255 hemagglutinin-estera... 1783.01 0 ALIGNMENTS >MW310541 Betacoronavirus 1 isolate 2408 hemagglutinin-esterase gene, partial cds Length = 1211 E-value = 0, Score = 2011, Bitscore = 1814.57, Identities = 1076/1211 (88%), Positives = 1209/1211 (99%), Gaps = 0/1211 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCCGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++| |++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATCTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||||++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 1081 TCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||| ||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGATCATAATTATT 1200 Query: 1219 SUAGUUUUGUU 1229 +|||||||||| Sbjct: 1201 GTAGTTTTGTT 1211 >MW310551 Betacoronavirus 1 isolate 1255 hemagglutinin-esterase gene, partial cds Length = 1211 E-value = 0, Score = 1976, Bitscore = 1783.01, Identities = 1069/1211 (88%), Positives = 1202/1211 (99%), Gaps = 0/1211 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCCGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||| ||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAGTGCACCACTTCTGGCAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||| ||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+ ||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||| ++|||+||||||||||||||||||| ||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACCATTACCACTGGTTTCGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||| ||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCTAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||| ||||||+ ||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACAGCTGCTGTTATTAATACACCTGATGTACCCATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1141 TATGATCCTCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 1200 Query: 1219 SUAGUUUUGUU 1229 +|||||||||| Sbjct: 1201 GTAGTTTTGTT 1211 Database: nr Query=17. HE - realigned consensus sequence Length=375 Score E Sequences producing significant alignments: (Bits) Value JF795418 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-F-20 hem... 563.937 3.47e-156 ALIGNMENTS >JF795418 Betacoronavirus 1 strain BCoV/WD/2003/WDBR-F-20 hemagglutinin-esterase gene, partial cds Length = 375 E-value = 3.47e-156, Score = 624, Bitscore = 563.937, Identities = 334/375 (89%), Positives = 374/375 (99%), Gaps = 0/375 (0%) Frame = +1 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 1 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 60 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 61 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 120 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 121 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 180 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 181 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 240 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 241 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 300 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ +|+|||+ Sbjct: 301 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATTTACAGCC 360 Query: 481 HUUUGUAAAUYUGGU 495 +|||||||||+|||| Sbjct: 361 CTTTGTAAATCTGGT 375 Database: nr Query=17. HE - realigned consensus sequence Length=1164 Score E Sequences producing significant alignments: (Bits) Value KF272918 Bovine coronavirus isolate RVLC10 hemagglutinin est... 1738.83 0 ALIGNMENTS >KF272918 Bovine coronavirus isolate RVLC10 hemagglutinin esterase protein gene, partial cds Length = 1165 E-value = 0, Score = 1927, Bitscore = 1738.83, Identities = 1033/1164 (88%), Positives = 1161/1164 (99%), Gaps = 0/1164 (0%) Frame = +1 Query: 54 UUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGG 113 || |||+|||||||||||||||+||||+||+||||||||||||||||||||||||||||| Sbjct: 2 TTATGATAACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGG 61 Query: 114 UGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAU 173 |||||||||+|||||||||||+||||||||||+||||||+|||||+||||||||+||||| Sbjct: 62 TGACAGTCGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATAT 121 Query: 174 GGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAU 233 ||||||+||+||+|||+|||||++||+|||+|||||||||+||||||||||||||||||| Sbjct: 122 GGACCTTAACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCAT 181 Query: 234 YUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAU 293 +||||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+|| Sbjct: 182 TTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTAT 241 Query: 294 YUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAG 353 +||+|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+|| Sbjct: 242 TTTTTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGCAG 301 Query: 354 UAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGC 413 ||||||||||||||||||||||||||||||+||||||||||||+|||||||||||||||| Sbjct: 302 TAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGC 361 Query: 414 UGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYC 473 |||+||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ Sbjct: 362 TGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATT 421 Query: 474 KAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGA 533 +|+|||++|||||||||+|||||||||||||||||||||+||+||+||+||++||||||| Sbjct: 422 TACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGA 481 Query: 534 AGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGA 593 ||||++|+|++|+||||||||||||||||+|||||||||+||||||+||||||||||||| Sbjct: 482 AGCTAATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGA 541 Query: 594 CGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUA 653 |||||||||||||||||||||||||||+||+||||||||+|||||+|||||||||||||| Sbjct: 542 CGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTA 601 Query: 654 UGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYAC 713 ||||||+|||||||||||||||||||||||+||||||||||||||||||+||||||++|| Sbjct: 602 TGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTAC 661 Query: 714 USAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAA 773 |+||||||||||||||||||||||+||||||||||||||||||+||+||||||||||+|| Sbjct: 662 TGAAACCATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAA 721 Query: 774 UUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUAR 833 ||||||||||||||||||+||||||||||||||||||||+||+||||||||||||||||+ Sbjct: 722 TTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAA 781 Query: 834 YAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCH 893 +|||||||||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|+ Sbjct: 782 TAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCA 841 Query: 894 KUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUAC 953 +|||||+|||||||||||+||||||||+|||||+|||||||||||||||||||||||||| Sbjct: 842 GTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTAC 901 Query: 954 UACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACU 1013 |||+||+||||||||||||||||||||||||||+|||||+|||||||||||||||||||| Sbjct: 902 TACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACT 961 Query: 1014 YAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAA 1073 +|||||||||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|| Sbjct: 962 CAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAA 1021 Query: 1074 URUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAA 1133 |+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++|||||| Sbjct: 1022 TGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAA 1081 Query: 1134 YACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCU 1193 +||+||||||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|| Sbjct: 1082 TACACCTGATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTCT 1141 Query: 1194 UUUGGKUGYUGCGGUCAUAAUUAU 1217 |||||+||+|||||||||||| || Sbjct: 1142 TTTGGGTGTTGCGGTCATAATAAT 1165 Database: nr Query=17. HE - realigned consensus sequence Length=1217 Score E Sequences producing significant alignments: (Bits) Value MW310543 Betacoronavirus 1 isolate 1348 hemagglutinin-estera... 1798.34 0 ALIGNMENTS >MW310543 Betacoronavirus 1 isolate 1348 hemagglutinin-esterase gene, partial cds Length = 1217 E-value = 0, Score = 1993, Bitscore = 1798.34, Identities = 1076/1217 (88%), Positives = 1209/1217 (99%), Gaps = 0/1217 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCTGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+|| |||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAATGCACCACTTCTGGTAGCAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||| ||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTAAAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+||||||||||||||||| Sbjct: 601 TTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAC 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+|| |||||||||||||||+||||| ++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACCGGTGTTATTTATGGTCTCAATGCTACTGAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++| +|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCGGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+||||||||||||||| |+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATCACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++ |||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACTGCTGCTGACATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 1200 Query: 1219 SUAGUUUUGUUGUUAUA 1235 +|||||||||||||||| Sbjct: 1201 GTAGTTTTGTTGTTATA 1217 Database: nr Query=17. HE - realigned consensus sequence Length=1272 Score E Sequences producing significant alignments: (Bits) Value MZ825079 Bovine coronavirus isolate KCD GJ3 2019 hemagglutin... 1891.22 0 MH475914 Bovine coronavirus isolate QHGC1 hemagglutinin gene... 1889.41 0 MK688459 Bovine coronavirus isolate QHHZ1 hemagglutinin gene... 1884.91 0 ALIGNMENTS >MZ825079 Bovine coronavirus isolate KCD GJ3 2019 hemagglutinin-esterase protein gene, partial cds Length = 1272 E-value = 0, Score = 2096, Bitscore = 1891.22, Identities = 1128/1272 (88%), Positives = 1265/1272 (99%), Gaps = 0/1272 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 ||| ||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGCTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATCTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||| ||||| ||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCCATATTTTTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||| +|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACTCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCU 1272 ||||| |||||| Sbjct: 1261 CTGCAGGATGCT 1272 >MH475914 Bovine coronavirus isolate QHGC1 hemagglutinin gene, partial cds Length = 1272 E-value = 0, Score = 2094, Bitscore = 1889.41, Identities = 1128/1272 (88%), Positives = 1264/1272 (99%), Gaps = 0/1272 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCTTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAT 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGCTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCU 1272 |||||||||||| Sbjct: 1261 CTGCATGATGCT 1272 >MK688459 Bovine coronavirus isolate QHHZ1 hemagglutinin gene, partial cds Length = 1272 E-value = 0, Score = 2089, Bitscore = 1884.91, Identities = 1127/1272 (88%), Positives = 1263/1272 (99%), Gaps = 0/1272 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||++|||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCCTAGATTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 ||||| |||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCCCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|| ||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTACATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||| ||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+||||||||||||||| |+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTACAATGGCTCTGCACAAGCTACAGCT 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCCGCCTATATTGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 GTGGGTGATTATTATTATAAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+||||| ||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCAAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCCACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+|||||||||||||| |++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTCAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||| ||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAAGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+|| |||||||||||||||||+|||||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCCGGTTTTACTAGCATACTCAGTGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+|||||||| |||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCCTATGGCAGATGCCCTACTGCAGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCTATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||||||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCAUGAUGCU 1272 |||||||||||| Sbjct: 1261 CTGCATGATGCT 1272 Database: nr Query=17. HE - realigned consensus sequence Length=1165 Score E Sequences producing significant alignments: (Bits) Value KF272917 Bovine coronavirus isolate RVLC7 hemagglutinin este... 1749.65 0 KF272916 Bovine coronavirus isolate RVLC4 hemagglutinin este... 1743.34 0 ALIGNMENTS >KF272917 Bovine coronavirus isolate RVLC7 hemagglutinin esterase protein gene, partial cds Length = 1165 E-value = 0, Score = 1939, Bitscore = 1749.65, Identities = 1036/1165 (88%), Positives = 1164/1165 (99%), Gaps = 0/1165 (0%) Frame = +1 Query: 53 GUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUG 112 |||||||+|||||||||||||||+||||+||+|||||||||||||||||||||||||||| Sbjct: 1 GTTTTGACAACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTG 60 Query: 113 GUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUA 172 ||||||||||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||| Sbjct: 61 GTGACAGTCGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATA 120 Query: 173 UGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCA 232 |||||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||| Sbjct: 121 TGGACCTTAACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCA 180 Query: 233 UYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYA 292 |+||||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+| Sbjct: 181 TTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTA 240 Query: 293 UYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYA 352 |+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+| Sbjct: 241 TTTTTTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGCA 300 Query: 353 GUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGG 412 |||||||||||||||||||||||||||||||+||||||||||||+||||||||||||||| Sbjct: 301 GTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGG 360 Query: 413 CUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAY 472 ||||+||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ Sbjct: 361 CTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAAT 420 Query: 473 CKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUG 532 |+|+|||++|||||||||+|||||||||||||||||||||+||+||+||+||++|||||| Sbjct: 421 CTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTG 480 Query: 533 AAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUG 592 |||||++|+|++|+||||||||||||||||+|||||||||+||||||+|||||||||||| Sbjct: 481 AAGCTAATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTG 540 Query: 593 ACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUU 652 ||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||||||| Sbjct: 541 ACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATT 600 Query: 653 AUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYA 712 |||||||+|||||||||||||||||||||||+||||||||||||||||||+||||||++| Sbjct: 601 ATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTA 660 Query: 713 CUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYA 772 ||+||||||||||||||||||||||+||||||||||| ||||||+||+||||||||||+| Sbjct: 661 CTGAAACCATTACCACTGGTTTTGATTTTAATTGTCACTATTTAGTTCTACCCTCTGGTA 720 Query: 773 AUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUA 832 |||||||||||||||||||+||||||||||||||||||||+||+|||||||||||||||| Sbjct: 721 ATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTA 780 Query: 833 RYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKC 892 ++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+||||+++| Sbjct: 781 ATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGC 840 Query: 893 HKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUA 952 ++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||||||| Sbjct: 841 AGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTA 900 Query: 953 CUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUAC 1012 ||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||||||| Sbjct: 901 CTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATAC 960 Query: 1013 UYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYA 1072 |+|||||||||||||||||+|||||+|||||+||+|||||+|||||||||||||||+|+| Sbjct: 961 TCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATA 1020 Query: 1073 AURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUA 1132 ||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||| Sbjct: 1021 ATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTA 1080 Query: 1133 AYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYC 1192 |+||+||||||++|||+||||||+|||||||+||+||||||+||||||||||||||||+| Sbjct: 1081 ATACACCTGATGTACCTATTTGTGTGTATGATCCGCTACCAATTATTTTGCTTGGCATTC 1140 Query: 1193 UUUUGGKUGYUGCGGUCAUAAUUAU 1217 ||||||+||+||||||||||||||| Sbjct: 1141 TTTTGGGTGTTGCGGTCATAATTAT 1165 >KF272916 Bovine coronavirus isolate RVLC4 hemagglutinin esterase protein gene, partial cds Length = 1165 E-value = 0, Score = 1932, Bitscore = 1743.34, Identities = 1035/1165 (88%), Positives = 1162/1165 (99%), Gaps = 0/1165 (0%) Frame = +1 Query: 53 GUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUG 112 |||||||+|||||||||||||||+||||+||+|||||||||||||||||||||||||||| Sbjct: 1 GTTTTGACAACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTG 60 Query: 113 GUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUA 172 ||||||||||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||| Sbjct: 61 GTGACAGTCGTTCAGATTGTAATCATGTTGTTACTACCAATCCCCGTAATTATTCTTATA 120 Query: 173 UGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCA 232 |||||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||| Sbjct: 121 TGGACCTTAACCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCA 180 Query: 233 UYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYA 292 |+||||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+| Sbjct: 181 TTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTA 240 Query: 293 UYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYA 352 |+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+| Sbjct: 241 TTTTTTATGAGGGTGTTAATTTTACGCCTCATCATGCCTTTAAATGCACCACTTCTGGCA 300 Query: 353 GUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGG 412 |||||||||||||||||||||||||||||||+||||||||||||+||||||||||||||| Sbjct: 301 GTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGG 360 Query: 413 CUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAY 472 ||||+||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+ Sbjct: 361 CTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAAT 420 Query: 473 CKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUG 532 |+|+|||++|||||||||+|||||||||||||||||||||+||+||+||+||++|||||| Sbjct: 421 CTACAGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTG 480 Query: 533 AAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUG 592 |||||++|+|++|+||||||||||||||||+|||||||||+||||||+|||||||||||| Sbjct: 481 AAGCTAATTTTGGGGATTATTATTATAAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTG 540 Query: 593 ACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUU 652 ||||||||||||||||||||||||||||+||+||||||||+|||||+||||||||||||| Sbjct: 541 ACGAGTATATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATT 600 Query: 653 AUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYA 712 |||||||+|||||||||||||||||||||||+||||||||||||||||||+||||||++| Sbjct: 601 ATGATGATAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTA 660 Query: 713 CUSAAACCAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYA 772 ||+||||||||||||||||||||||+||||||||||||||||||+||+||||||||||+| Sbjct: 661 CTGAAACCATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTA 720 Query: 773 AUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUA 832 |||||||||||||||||||+||||||||||||||||||||+||+|||||||||||||||| Sbjct: 721 ATTATTTAGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTA 780 Query: 833 RYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKC 892 ++|||||||||||||||||+|||||||||||+|||||+||+||||||||||+||||+++| Sbjct: 781 ATAAGCGTAAGGATTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGC 840 Query: 893 HKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUA 952 ++|||||+|||||||||||+||||||||+|||||+||||||||||||||||||||||||| Sbjct: 841 AGTCTGATAACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTA 900 Query: 953 CUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUAC 1012 ||||+||+||||||||||||||||||||||||||+|||||+||||||||||||||||||| Sbjct: 901 CTACCAATTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATAC 960 Query: 1013 UYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYA 1072 |+|||||||||||||||||+|||||+|||||+||+ ||||+|||||||||||||||+|+| Sbjct: 961 TCAGTGGTTTGTTATATGACTCACCTTGTTTTTCGAAGCAAGGTGTTTTTAGGTATGATA 1020 Query: 1073 AURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUA 1132 ||+||||||||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||| Sbjct: 1021 ATGTTAGCAGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTA 1080 Query: 1133 AYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYC 1192 |+||+||||||++|||+|||||| |||||||+||+||||||+||||||||||||||||+| Sbjct: 1081 ATACACCTGATGTACCTATTTGTATGTATGATCCGCTACCAATTATTTTGCTTGGCATTC 1140 Query: 1193 UUUUGGKUGYUGCGGUCAUAAUUAU 1217 ||||||+||+|||||||||||| || Sbjct: 1141 TTTTGGGTGTTGCGGTCATAATAAT 1165 Database: nr Query=17. HE - realigned consensus sequence Length=322 Score E Sequences producing significant alignments: (Bits) Value EU703815 Bovine coronavirus UP1/PRT/2005 hemmaglutinin-ester... 456.637 1.30e-123 EU703816 Bovine coronavirus UP2/PRT/2005 hemmaglutinin-ester... 450.325 5.51e-122 ALIGNMENTS >EU703815 Bovine coronavirus UP1/PRT/2005 hemmaglutinin-esterase protein mRNA, partial cds Length = 322 E-value = 1.30e-123, Score = 505, Bitscore = 456.637, Identities = 276/322 (85%), Positives = 322/322 (100%), Gaps = 0/322 (0%) Frame = +1 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 1 CAGGTTGTTGATTCACGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCGGTTGCT 60 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 61 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAACTATGTTGGTGTTTATGAT 120 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 121 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGATTCACCT 180 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 181 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAT 240 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 241 TCCTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCTGATGTACCTATTTGTGTG 300 Query: 1159 UAUGAYCCKCUACCAMUUAUUU 1180 |||||+||+||||||+|||||| Sbjct: 301 TATGATCCGCTACCACTTATTT 322 >EU703816 Bovine coronavirus UP2/PRT/2005 hemmaglutinin-esterase protein mRNA, partial cds Length = 322 E-value = 5.51e-122, Score = 498, Bitscore = 450.325, Identities = 275/322 (85%), Positives = 320/322 (99%), Gaps = 0/322 (0%) Frame = +1 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 1 CAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 60 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||| ||+||+|||||||||||||||||| Sbjct: 61 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACCACCAATTATGTTGGTGTTTATGAT 120 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 121 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 180 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+| ||||||||+||+ Sbjct: 181 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTATGGCCTCTCTAC 240 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 241 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 300 Query: 1159 UAUGAYCCKCUACCAMUUAUUU 1180 |||||+||+||||||+|||||| Sbjct: 301 TATGATCCGCTACCAATTATTT 322 Database: nr Query=17. HE - realigned consensus sequence Length=418 Score E Sequences producing significant alignments: (Bits) Value JF795429 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-766 he... 625.252 1.21e-174 ALIGNMENTS >JF795429 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-766 hemagglutinin-esterase gene, partial cds Length = 418 E-value = 1.21e-174, Score = 692, Bitscore = 625.252, Identities = 371/418 (88%), Positives = 417/418 (99%), Gaps = 0/418 (0%) Frame = +1 Query: 117 CAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGA 176 ||||||+|||||||||||+||||||||||+||||||+|||||+||||| ||+|||||||| Sbjct: 1 CAGTCGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGA 60 Query: 177 CCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUU 236 |||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|| Sbjct: 61 CCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTT 120 Query: 237 UAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUU 296 ||||||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+|| Sbjct: 121 TAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTT 180 Query: 297 YUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAA 356 +|||||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||| Sbjct: 181 CTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAA 240 Query: 357 UGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGU 416 |||||||||||||||||||||||||||+||||||||||||+||||||||||||||||||| Sbjct: 241 TGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGT 300 Query: 417 KUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAH 476 +||||||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+ Sbjct: 301 GTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTAC 360 Query: 477 AGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAA 534 |||++|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||| Sbjct: 361 AGCCCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAA 418 Database: nr Query=17. HE - realigned consensus sequence Length=1206 Score E Sequences producing significant alignments: (Bits) Value MT820632 Longquan Rl rat coronavirus isolate Ruili-66, parti... 465.654 2.50e-126 ALIGNMENTS >MT820632 Longquan Rl rat coronavirus isolate Ruili-66, partial genome Length = 30622 E-value = 2.50e-126, Score = 515, Bitscore = 465.654, Identities = 789/1206 (65%), Positives = 890/1206 (73%), Gaps = 23/1206 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+| ||+|| ||||| |||| |||||||| |||||||| ||||| ||+ || || Sbjct: 21955 AATGTAGTTTCACATTTTAATGATGATTGGTTCTTATTTGGCGACAGCCGTAGTGACTGC 22014 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| | ||| | | ||| ||| |||||||| | |+||+ | +|| Sbjct: 22015 AACCATTT-------ACCTAAC-----AATCGTTCGTATATGGATTTGGATCCCTCTCTG 22062 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++||+ ||+|| ||||| +|||| ||||| || |||||+|||||||||||||| ||| Sbjct: 22063 TGTGATTCAGGTAAGATATCTTCTAAGGCTGGTAATTCCATCTTTAGGAGTTTTCATTTT 22122 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 ||+|||||||| ||||||||||| || ||| | |||||+|| ||+||||| || +|||+| Sbjct: 22123 ACTGATTTTTACAATTACACAGGAGAGGGTAATCAAATTATATTTTATGAAGGAGTTAAT 22182 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 ||||| || +||||||| ||||| || |+ + ||||| ||||||| | | ||||| | Sbjct: 22183 TTTACCCCGCATCATGCTTTTAAGTGTACTGCATCTGGAAGTAATGTTGTGTGGATTGAA 22242 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||| || +|||||| | | | |||| | |||| | +||| | | || ||+ Sbjct: 22243 AATAAGGGTAGGTTTTACCATAAATTGTATACTAGTATGTCCCATTATAGGACGCTCACT 22302 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYU 492 |||| |+||| || ||| ||+ || | ||+| |+ |++| ||||| | Sbjct: 22303 ATTGTAAATGTTCCCTATTCATATGGAGGTCAAGTTAAACCCACCACCATGTGTAAGAGT 22362 Query: 493 GGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAU 552 ||| |||| |||||| ||+|| ||+| +||++|| || ||| +|+|++ +|||||| Sbjct: 22363 GGTTCTTTAACTCTTAACAATCCAGCCTTCATAGCTAAGGAGGCTGGTGTTAATGATTAT 22422 Query: 553 UAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUU 612 ||||||| ||| ||| |+||| |+| | |||||||| |||||||| || |||||| Sbjct: 22423 TATTATAGAAGTGAGGCTAATTTTACTCTCACTGGTTGTGATGAGTATATAGTTCCACTT 22482 Query: 613 UGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAU 672 ||||||||+||+|| || ||+ | || | ||||||||||||||+|| || |||||| Sbjct: 22483 TGTATTTTTAATGGAAAATTTCTTTCCACCGGTAAGTATTATGATGATAGCCAGTATTAT 22542 Query: 673 UUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYAC-USAAACCAUUACCACUGG 731 | ||||| ||+||||||||| ||||||| +| || |++|| |+| | | | || || Sbjct: 22543 TATAATATGGATACTGGTGTTGTTTATGGATTTAACTCTACGTCACA-GACCTCAACCGG 22601 Query: 732 UUUUGAYUUUAAUUGUCAUUAUUUA---SUUYUACCCUCUGGYAAUUAUUUAGCCAUUUC 788 | ||||+|| | ||| | ||| || +|| || ||||+ ||| | ||||||| Sbjct: 22602 TCTTGATTTAGAATGTAAATATCTAAACCTTAAAC---CTGGCTCCTATAAATCCATTTC 22658 Query: 789 AAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUU 848 ||+|||||| |||| ||| | ||+| +|| || || || ||||++||| |||| ||| Sbjct: 22659 TAATGAGCTACTGTTGACTATACCTATTAAGGCTATTTGCCTTAATAAGGCAAAGGCTTT 22718 Query: 849 UACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGAC 908 | ||||| || ||+|||||+||+ | ||||||| | ++ ++|||||+|| | || Sbjct: 22719 TGTACCTGTTCAAGTCGTTGATTCCAGATGGAACAGCGGTCGTGTTTCTGATAATAAAAC 22778 Query: 909 GGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGG 968 ||+| |||||+ || +|| | || ||||| |||||| ||| +||+|| |||| Sbjct: 22779 TGCTGAAGCTTGTAAATTGCCCTTTTGCTATTTCCGTAATAGCACTGGCAATTACCTTGG 22838 Query: 969 UGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUA 1028 |||||||| |||||+|| ||+||||| ||||| ||||| | ||||||||| || Sbjct: 22839 CAGGTATGATATAAATCATGGCGATGCTGGATTTACCAGCATTTTGTCTGGTTTGTTGTA 22898 Query: 1029 UGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUG 1088 | |+ ||+||| | | ||+|||| |||| |||+|+|||+||| || |+|+|| Sbjct: 22899 TAATGTGCCTTGTATAGCCTTTCAGGGTGCTTTTTATTATGATAATGTTACCACTGTTTG 22958 Query: 1089 GCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACC 1148 |||| | | + +| |||+ ||+||||| || ||++|||| | + | ||++||| Sbjct: 22959 GCCTTTGTCTGGTTCTGGACATTGCCCTACAGCATCTAATATT---ATCGTTAATATACC 23015 Query: 1149 YAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGU 1208 + |||||+ |||||+||+ | || +| ||||||||||| ||+ | || |+| + || || Sbjct: 23016 TGTTTGTGCATATGATCCTTTGCCCATCATTTTGCTTGGTATTTTATTAGGTATAGCAGT 23075 Query: 1209 CAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGA 1268 | ||||| +| ||||| |||| |||||| | |+ ||||||||| |||||| ||||| Sbjct: 23076 GCTTATTATAGTCTTTTTGATGTTTTATTTTTTAGTTGATAATGGTGTTAGGCTTCATGA 23135 Query: 1269 UGCUUA 1274 ||||| Sbjct: 23136 AGCTTA 23141 Database: nr Query=17. HE - realigned consensus sequence Length=1199 Score E Sequences producing significant alignments: (Bits) Value MW310542 Betacoronavirus 1 isolate 2218 hemagglutinin-estera... 1765.88 0 ALIGNMENTS >MW310542 Betacoronavirus 1 isolate 2218 hemagglutinin-esterase gene, partial cds Length = 1199 E-value = 0, Score = 1957, Bitscore = 1765.88, Identities = 1058/1199 (88%), Positives = 1191/1199 (99%), Gaps = 0/1199 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCTGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAGCAAATCATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||| ||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAATGCACCACTTCAGGCAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++|+|++|+|||||||| ||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTTTGGGGATTATTACTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+|| |||||||||||||||+||||| ++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACCGGTGTTATTTATGGTCTCAATGCTACTCAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||| ||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCTAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+| ||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAGCAGTGTTTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||| ||||||++||||||+||+ |||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACAGCTGCTGATATTAATACATCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAU 1217 |||||+||+||||||+||||||||||||||||+|||||||+||+||||||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTAT 1199 Database: nr Query=17. HE - realigned consensus sequence Length=364 Score E Sequences producing significant alignments: (Bits) Value JF345128 Betacoronavirus 1 strain equine/Brazil/2009/E19 hem... 542.297 1.14e-149 ALIGNMENTS >JF345128 Betacoronavirus 1 strain equine/Brazil/2009/E19 hemagglutinin-esterase gene, partial cds Length = 367 E-value = 1.14e-149, Score = 600, Bitscore = 542.297, Identities = 323/364 (88%), Positives = 362/364 (99%), Gaps = 0/364 (0%) Frame = +1 Query: 161 AUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAG 220 |||||||+|||||||||||+||+||+|||+|||||++||+|||+|||||||||+|||||| Sbjct: 1 ATTATTCTTATATGGACCTTAATCCTGCCCTGTGTGATTCTGGTAAAATATCATCTAAAG 60 Query: 221 CUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAG 280 |||||||||||||+||||||||||||||||||||+||||||||||||||||||||||||| Sbjct: 61 CTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAG 120 Query: 281 GUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCA 340 ||||+|||||+||+||+|||||||||+|||+||||||||||+|| ||||||||||||||| Sbjct: 121 GTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACGCCTTATTATGCCTTTAAATGCA 180 Query: 341 BCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUU 400 +||+||||||+|||||||||||||||||||| |||||||||||+||||||||||||+||| Sbjct: 181 CCACTTCTGGTAGTAATGATATTTGGATGCATAATAAAGGCTTGTTTTACACTCAGGTTT 240 Query: 401 AUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUG 460 ||||||||||||||||+||||||||+|||||+|||||||+|||||||||||||||+|||| Sbjct: 241 ATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATG 300 Query: 461 GCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMU 520 |||||||||||+|+|+|||++|||||||||+|||||||||||||||||||||+||+||+| Sbjct: 301 GCTCTGCACAATCTACAGCTCTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCAT 360 Query: 521 AYAU 524 |+|| Sbjct: 361 ATAT 364 Database: nr Query=17. HE - realigned consensus sequence Length=396 Score E Sequences producing significant alignments: (Bits) Value LR721662 XXX 559.429 1.48e-154 ALIGNMENTS >LR721662 XXX Length = 7933 E-value = 1.48e-154, Score = 619, Bitscore = 559.429, Identities = 343/396 (86%), Positives = 389/396 (98%), Gaps = 0/396 (0%) Frame = +1 Query: 880 AACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAU 939 || |+||||+++|++|||||+|||||||||||+||||||||+|||||+|||||||||||| Sbjct: 116 AAGAATGCCAGGCAGTCTGATAACATGACGGCGGTTGCTTGTCAACCTCCGTACTGTTAT 175 Query: 940 UUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGU 999 |||||||||||||||||+||+||||||||||||||||||||||||||+|||||+|||||| Sbjct: 176 TTTCGTAATTCTACTACCAACTATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGT 235 Query: 1000 UUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUU 1059 ||||||||||||||+||||||||||||||| |+|||||+|||||+||+||||| |||||| Sbjct: 236 TTTACTAGCATACTCAGTGGTTTGTTATATAATTCACCTTGTTTTTCGCAGCACGGTGTT 295 Query: 1060 UUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACU 1119 |||||||||+|+|||+||||||||+|+||||||||+||++|+|||||+||+||+|||||| Sbjct: 296 TTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTTTACTCTTATGGCAGATGTCCTACT 355 Query: 1120 GCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUU 1179 ||||||+ ||||||+||+||||||++|||+||||||+|||||||+||+||||||+||||| Sbjct: 356 GCTGCTGCTATTAATACCCCTGATGTACCTATTTGTGTGTATGATCCGCTACCACTTATT 415 Query: 1180 UUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUU 1239 |||||||||||+|||||||+||+||||||||||||||| +| |||||||||||||||||| Sbjct: 416 TTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTT 475 Query: 1240 AUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 ||||+||||||||||| ||||||||||||||||||| Sbjct: 476 ATGGTGGATAATGGTATTAGGCTGCATGATGCTTAG 511 Database: nr Query=17. HE - realigned consensus sequence Length=95 Score E Sequences producing significant alignments: (Bits) Value LR721662 XXX 141.047 1.30e-28 ALIGNMENTS >LR721662 XXX Length = 7933 E-value = 1.30e-28, Score = 155, Bitscore = 141.047, Identities = 86/95 (90%), Positives = 91/95 (95%), Gaps = 0/95 (0%) Frame = +1 Query: 1181 UGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUA 1240 ||| ||||||+|||||||+||+||||||||||||||| +| ||||||||||||||||||| Sbjct: 129 TGCCTGGCATTCTTTTGGGTGTTGCGGTCATAATTATAGTGGTTTTGTTGTTATATTTTA 70 Query: 1241 UGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 |||+||||||||||| ||||||||||||||||||| Sbjct: 69 TGGTGGATAATGGTATTAGGCTGCATGATGCTTAG 35 Database: nr Query=17. HE - realigned consensus sequence Length=399 Score E Sequences producing significant alignments: (Bits) Value JF345140 Betacoronavirus 1 strain cow/Brazil/2001/USP1 hemag... 603.611 3.96e-168 JQ918859 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-S/N he... 599.103 1.68e-166 JF345129 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B1 he... 594.595 2.05e-165 JF345127 Betacoronavirus 1 strain equine/Brazil/2009/E17 hem... 590.086 8.72e-164 ALIGNMENTS >JF345140 Betacoronavirus 1 strain cow/Brazil/2001/USP1 hemagglutinin-esterase gene, partial cds Length = 402 E-value = 3.96e-168, Score = 668, Bitscore = 603.611, Identities = 356/399 (89%), Positives = 399/399 (100%), Gaps = 0/399 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 TCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||||| Sbjct: 181 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 360 Query: 486 UAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 |||||+|||||||||||||||||||||+||+||+||+|| Sbjct: 361 TAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 399 >JQ918859 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-S/N hemagglutinin-esterase (HE) gene, partial cds Length = 402 E-value = 1.68e-166, Score = 663, Bitscore = 599.103, Identities = 355/399 (88%), Positives = 398/399 (99%), Gaps = 0/399 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 TCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||||| Sbjct: 181 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 360 Query: 486 UAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 |||||+|||||||||||||||||||||+||+||+||+|| Sbjct: 361 TAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 399 >JF345129 Betacoronavirus 1 strain cow/Brazil/2010/WDBR-B1 hemagglutinin-esterase gene, partial cds Length = 402 E-value = 2.05e-165, Score = 658, Bitscore = 594.595, Identities = 354/399 (88%), Positives = 397/399 (99%), Gaps = 0/399 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+||||| |||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCTTGTGTGATTCTGGCAAAATTTCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 TCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||| ||||| Sbjct: 181 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGACATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 360 Query: 486 UAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 |||||+|||||||||||||||||||||+||+||+||+|| Sbjct: 361 TAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 399 >JF345127 Betacoronavirus 1 strain equine/Brazil/2009/E17 hemagglutinin-esterase gene, partial cds Length = 402 E-value = 8.72e-164, Score = 653, Bitscore = 590.086, Identities = 353/399 (88%), Positives = 396/399 (99%), Gaps = 0/399 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTAATACCAACCCCCGTAATTATTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 ||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 ACACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+|| |||||||||||||||+||+||||||+|||||||||||||| Sbjct: 181 TGTTAATTTTACGCCTTATTATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 |||||| |||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCATAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCTCTTTG 360 Query: 486 UAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAU 524 |||||+|||||||||||||||||||||+||+||+||+|| Sbjct: 361 TAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATAT 399 Database: nr Query=17. HE - realigned consensus sequence Length=1206 Score E Sequences producing significant alignments: (Bits) Value MH687968 Betacoronavirus sp. strain VZ_BetaCoV_16715_52, com... 526.067 8.73e-145 ALIGNMENTS >MH687968 Betacoronavirus sp. strain VZ_BetaCoV_16715_52, complete genome Length = 31083 E-value = 8.73e-145, Score = 582, Bitscore = 526.067, Identities = 800/1206 (66%), Positives = 907/1206 (75%), Gaps = 23/1206 (1%) Frame = +1 Query: 73 AAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGU 132 |||+| ||+||+||||| |||| |||||||| |||||||||||||||||+ | || ||| Sbjct: 22467 AATGTAGTTTCTCATTTTAATGATGATTGGTTCTTATTTGGTGACAGTCGTACTGACTGT 22526 Query: 133 AAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUG 192 ||+||| +|||||| | ||| | +|||||||| ||+ |+||+ | +|| Sbjct: 22527 AACCAT-------CTACCAAAC-----AATCTTAGTTATATGGATCTTGATCCCTCGCTG 22574 Query: 193 UGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUU 252 |||++ |+|||+||||| || +|||| ||||| || |||||+|||||||||||||| ||| Sbjct: 22575 TGTAAATCTGGTAAAATTTCTTCTAAGGCTGGTAATTCCATTTTTAGGAGTTTTCATTTT 22634 Query: 253 ACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARU 312 || ||||| |||||||||||||| || ||| | |||||+|| ||+||||| || +| |+| Sbjct: 22635 ACAGATTTCTATAATTACACAGGTGAGGGTAATCAAATCATATTTTATGAAGGAGTCAAT 22694 Query: 313 UUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAG 372 ||||| || +| ||||| ||||| ||||+ + |||||+||||||||| | ||||| | Sbjct: 22695 TTTACACCACACCATGCTTTTAAGTGCACTGCATCTGGCAGTAATGATGTGTGGATTGAA 22754 Query: 373 AAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACW 432 ||||| || +|||||| | | | |||| | |||||| +| | | | |||||+ Sbjct: 22755 AATAAGGGTAAGTTTTACCATAATTTGTATACTAGTATGGCCAATTTTAGAATGCTTACT 22814 Query: 433 UUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYU 492 || |||+||| || || | ||+ ||| || | +| |+ |++| ||||| | Sbjct: 22815 ATTATTAATGTGCCTTACATCTATGGTGGTCAAGCTAAGCCCACTTCCATGTGTAAGAGT 22874 Query: 493 GGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAU 552 ||||| ||| |||||| ||+||+| +| +||++| |||| +|+|++ +|||||| Sbjct: 22875 GGTAGCTTAAATCTTAACAACCCTGTCTTTATAGCAAAGGAAGTGGGTGTTAATGATTAT 22934 Query: 553 UAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUU 612 ||||||||| ||| ||| |+||| |+| || || ||||| |||||||| || |||||| Sbjct: 22935 TATTATAAGAGTGAGGCTAATTTTACTCTATCTGGCTGTGATGAGTATATAGTGCCACTT 22994 Query: 613 UGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAU 672 ||||||||+||+||||||||+||||| | ||||||||||||||+||||| |||||| Sbjct: 22995 TGTATTTTTAATGGCAAGTTCTTGTCCACAGGTAAGTATTATGATGATAGTCAGTATTAT 23054 Query: 673 UUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYA---CUSAAACCAUUACCACU 729 | ||||| ||+||||||||| | ||||| +| || |++| | +| ||| | | | Sbjct: 23055 TATAATATTGATACTGGTGTTGTCTATGGGTTTAACTCTACGTCGCAGACC---TCAAAT 23111 Query: 730 GGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCA 789 ||| ||||+|| | ||| | |||||| |+| |||||+ ||| | | ||||| Sbjct: 23112 GGTCTTGATTTGGAGTGTAAATATTTAAATCTTAAATCTGGCTCCTATAAATCTATTTCT 23171 Query: 790 AAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUU 849 ||+||||| || | || | ||+| +||||| || || ||||++|| ||||||||| Sbjct: 23172 AATGAGCTGCTGCTTTCTATACCTATTAAAGCCATTTGCCTTAATAATGCAAAGGATTTT 23231 Query: 850 ACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACG 909 | +||||| || ||+|||||+||+ ||||||| |+ || ++ + |||||+|||| || Sbjct: 23232 ATGCCTGTCCAAGTTGTTGATTCCAGGTGGAATAACGCTCGTGTCTCTGATAACAAAACC 23291 Query: 910 GCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGU 969 |+| || ||+||| |||| |||||||||||| ||| | || +||+||||| || Sbjct: 23292 TCTGAGGCATGTCAATTACCGTTCTGTTATTTTCGCAATAGCAGTAGTAATTATGTAGGC 23351 Query: 970 GUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAG-UGGUUUGUUAUA 1028 ||||| || || ||+|| ||+|| |||||||||||||| |+|| |||||| || || Sbjct: 23352 AGGTATGACATAAACCATGGTGATGCAGGTTTTACTAGCAT-TTTAGCTGGTTTATTGTA 23410 Query: 1029 UGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUG 1088 | |+ || ||| |+ | ||+|||| ||| |||+|+|||+||| | |+|+|| Sbjct: 23411 TAATGTGCCATGTATTGCTGTACAGGGTGCCTTTTATTATGATAATGTTACTACTGTTTG 23470 Query: 1089 GCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACC 1148 |||| | +|+| |||+ +||+||||| || ||++|||| | + | ||++||| Sbjct: 23471 GCCTTTGCTGCCTTCTGGACAGTGCCCTACAGCATCTAATATT---ATATTTAATGTACC 23527 Query: 1149 YAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGU 1208 +||||||+ ||||||+||+ | || +| |||||| | || || | || |+| + || || Sbjct: 23528 TATTTGTTCGTATGATCCGTTGCCGATCATTTTGTTAGGTATATTGTTAGGTATAGCAGT 23587 Query: 1209 CAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGA 1268 | ||||||+| ||||| | | ||||||| |+|||||||||| |||||| ||||| Sbjct: 23588 GCTTATTATTGTCTTTTTGATTCTTTATTTTACAGTGGATAATGGTGTTAGGCTTCATGA 23647 Query: 1269 UGCUUA 1274 ||||| Sbjct: 23648 AGCTTA 23653 Database: nr Query=17. HE - realigned consensus sequence Length=1264 Score E Sequences producing significant alignments: (Bits) Value OL840239 Bovine coronavirus isolate KCD GJ2 2021 hemagglutin... 1885.81 0 ALIGNMENTS >OL840239 Bovine coronavirus isolate KCD GJ2 2021 hemagglutinin-esterase protein gene, partial cds Length = 1264 E-value = 0, Score = 2090, Bitscore = 1885.81, Identities = 1122/1264 (88%), Positives = 1259/1264 (99%), Gaps = 0/1264 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||+ |||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCATAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||| +||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATCGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGC 1264 |||| Sbjct: 1261 CTGC 1264 Database: nr Query=17. HE - realigned consensus sequence Length=1208 Score E Sequences producing significant alignments: (Bits) Value MW310546 Betacoronavirus 1 isolate 2391 hemagglutinin-estera... 1809.16 0 MW310544 Betacoronavirus 1 isolate 1601 hemagglutinin-estera... 1791.13 0 ALIGNMENTS >MW310546 Betacoronavirus 1 isolate 2391 hemagglutinin-esterase gene, partial cds Length = 1208 E-value = 0, Score = 2005, Bitscore = 1809.16, Identities = 1073/1208 (88%), Positives = 1206/1208 (99%), Gaps = 0/1208 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGTCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCCGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++| |++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATCTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||||++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 1081 TCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||| ||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGATCATAATTATT 1200 Query: 1219 SUAGUUUU 1226 +||||||| Sbjct: 1201 GTAGTTTT 1208 >MW310544 Betacoronavirus 1 isolate 1601 hemagglutinin-esterase gene, partial cds Length = 1208 E-value = 0, Score = 1985, Bitscore = 1791.13, Identities = 1069/1208 (88%), Positives = 1202/1208 (99%), Gaps = 0/1208 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGACAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 || ||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTCGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAATCCTGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||||||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||||||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTTTAGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 || |+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAAGTTGAAGCTGACTTTTATCTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+||||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTCAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||||++|||+||||||||||||||||||||||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAACCATTACCACTGGTTTTGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||||||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCAAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||| ||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGCTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+ |||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCCCGGTGGAACAACGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGCCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||| ||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAACATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+| ||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTATGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||||||||||++||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACACCTGATGTACCTATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1141 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 1200 Query: 1219 SUAGUUUU 1226 +||||||| Sbjct: 1201 GTAGTTTT 1208 Database: nr Query=17. HE - realigned consensus sequence Length=1275 Score E Sequences producing significant alignments: (Bits) Value AB362589 Porcine hemagglutinating encephalomyelitis virus ns... 1577.43 0 MF083115 Porcine hemagglutinating encephalomyelitis virus st... 1572.92 0 KY994645 Porcine hemagglutinating encephalomyelitis virus st... 1572.92 0 KU127229 Porcine hemagglutinating encephalomyelitis virus he... 1572.92 0 AY078417 Porcine hemagglutinating encephalomyelitis virus he... 1572.92 0 MW165134 Porcine hemagglutinating encephalomyelitis virus st... 1559.4 0 FJ009232 Porcine hemagglutinating encephalomyelitis virus st... 1554.89 0 AF481863 Porcine hemagglutinating encephalomyelitis virus HE... 1553.09 0 KY419113 Porcine hemagglutinating encephalomyelitis virus st... 1544.07 0 KY419109 Porcine hemagglutinating encephalomyelitis virus st... 1544.07 0 KY419107 Porcine hemagglutinating encephalomyelitis virus st... 1544.07 0 KY419106 Porcine hemagglutinating encephalomyelitis virus st... 1544.07 0 KY419112 Porcine hemagglutinating encephalomyelitis virus st... 1515.21 0 KY419105 Porcine hemagglutinating encephalomyelitis virus st... 1515.21 0 KY419104 Porcine hemagglutinating encephalomyelitis virus st... 1515.21 0 KY419103 Porcine hemagglutinating encephalomyelitis virus st... 1511.61 0 KY419110 Porcine hemagglutinating encephalomyelitis virus st... 1510.71 0 OL542832 Porcine hemagglutinating encephalomyelitis virus is... 1473.74 0 ALIGNMENTS >AB362589 Porcine hemagglutinating encephalomyelitis virus ns2, HE genes for ns2 phosphorylated protein, hemagglutinin-esterase protein, complete cds, strain: 67N Length = 3030 E-value = 0, Score = 1748, Bitscore = 1577.43, Identities = 1065/1275 (83%), Positives = 1194/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 1366 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCGGCATCATTGGTACTTTTGGTTTTGA 1424 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 1425 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 1484 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|| || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 1485 TCGTTCCGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCT 1544 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 1545 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 1604 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 1605 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 1664 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 1665 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATTAGTGCTGGTAATAATGA 1724 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 1725 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 1784 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 1785 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 1844 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 1845 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 1904 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 1905 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 1964 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 1965 TATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 2024 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 2025 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 2084 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 2085 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 2144 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 2145 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 2204 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 2205 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 2264 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 2265 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 2324 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|| |||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 2325 CTACGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 2384 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 2385 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 2444 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 2445 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 2504 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 2505 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 2564 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||||||||+||||||||||||||| Sbjct: 2565 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAG 2624 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 2625 GCAGCATTATGCTTA 2639 >MF083115 Porcine hemagglutinating encephalomyelitis virus strain CC14, complete genome Length = 30682 E-value = 0, Score = 1743, Bitscore = 1572.92, Identities = 1064/1275 (83%), Positives = 1193/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22354 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCGGCATCATTGGTACTTTTGGTTTTGA 22412 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22413 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22472 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|| || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 22473 TCGTTCCGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCT 22532 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22533 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22592 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22593 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22652 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 22653 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATTAGTGCTGGTAATAATGA 22712 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 22713 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 22772 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 22773 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22832 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22833 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22892 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22893 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 22952 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22953 TATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 23012 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 23013 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 23072 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 23073 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 23132 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23133 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 23192 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23193 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 23252 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23253 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 23312 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|| |||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 23313 CTACGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 23372 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23373 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23432 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 23433 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 23492 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23493 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23552 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||||||||+||||||||||| ||| Sbjct: 23553 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAG 23612 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23613 GCAGCATTATGCTTA 23627 >KY994645 Porcine hemagglutinating encephalomyelitis virus strain JL/2008, complete genome Length = 30684 E-value = 0, Score = 1743, Bitscore = 1572.92, Identities = 1064/1275 (83%), Positives = 1193/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22354 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCGGCATCATTGGTACTTTTGGTTTTGA 22412 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22413 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22472 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|| || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 22473 TCGTTCCGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCT 22532 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22533 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22592 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22593 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22652 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 22653 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATTAGTGCTGGTAATAATGA 22712 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 22713 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 22772 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 22773 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22832 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22833 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22892 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22893 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 22952 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22953 TATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 23012 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 23013 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 23072 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 23073 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 23132 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23133 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 23192 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23193 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 23252 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23253 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 23312 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|| |||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 23313 CTACGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 23372 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23373 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23432 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 23433 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 23492 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|| +|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23493 TGATTTACTTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23552 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||||||||+||||||||||||||| Sbjct: 23553 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAG 23612 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23613 GCAGCATTATGCTTA 23627 >KU127229 Porcine hemagglutinating encephalomyelitis virus hemagglutinin-esterase protein, spike glycoprotein, small envelope protein, membrane protein, and nucleocapsid protein genes, complete cds Length = 8123 E-value = 0, Score = 1743, Bitscore = 1572.92, Identities = 1064/1275 (83%), Positives = 1193/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 16 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCGGCATCATTGGTACTTTTGGTTTTGA 74 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 75 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 134 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|| || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 135 TCGTTCCGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCT 194 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 195 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 254 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 255 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 314 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 315 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATTAGTGCTGGTAATAATGA 374 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 375 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 434 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 435 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 494 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 495 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 554 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 555 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 614 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 615 TATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 674 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 675 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 734 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 735 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 794 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 795 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 854 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 855 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 914 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 915 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 974 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|| |||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 975 CTACGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 1034 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 1035 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 1094 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 1095 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 1154 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 1155 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 1214 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||||||||+||||||||||| ||| Sbjct: 1215 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAG 1274 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 1275 GCAGCATTATGCTTA 1289 >AY078417 Porcine hemagglutinating encephalomyelitis virus hemagglutinin-esterase protein, spike glycoprotein, 4.9 kDa non-structural protein, 12.7 kDa non-structural protein, small envelope-associated protein, matrix glycoprotein, nucleocapsid protein, and N2 protein genes, complete cds Length = 8123 E-value = 0, Score = 1743, Bitscore = 1572.92, Identities = 1064/1275 (83%), Positives = 1193/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 16 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTACTTTTGGTTTTGA 74 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 75 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 134 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|| || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 135 TCGTTCCGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCT 194 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 195 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 254 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 255 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 314 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 315 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGCTGGTAATAATGA 374 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 375 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 434 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 435 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 494 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 495 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 554 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 555 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 614 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 615 TATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 674 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 675 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 734 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 735 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 794 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 795 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 854 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 855 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 914 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 915 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 974 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|| |||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 975 CTACGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 1034 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 1035 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 1094 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 1095 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 1154 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 1155 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 1214 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||||||||+||||||||||| ||| Sbjct: 1215 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTTATGGTGGATAATGGTATTAG 1274 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 1275 GCAGCATTATGCTTA 1289 >MW165134 Porcine hemagglutinating encephalomyelitis virus strain PHEV/67N/US/1970, complete genome Length = 30673 E-value = 0, Score = 1728, Bitscore = 1559.4, Identities = 1061/1275 (83%), Positives = 1190/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22348 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTACTTTTGGTTTTGA 22406 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22407 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22466 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+|||||| |||+ |||||+|||||+||||||||+||||||||||| Sbjct: 22467 TCGTACCGACTGTAATCATGTTTTTAAAACCAACCCCCGTAATTATTCTTATATGGACCT 22526 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22527 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22586 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22587 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22646 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 22647 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGCTGGTAATAATGA 22706 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 22707 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 22766 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 22767 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22826 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22827 ACTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22886 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22887 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 22946 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22947 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 23006 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 23007 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 23066 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||| ||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 23067 CATCACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 23126 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23127 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 23186 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23187 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 23246 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23247 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 23306 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 23307 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 23366 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23367 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23426 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 23427 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 23486 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23487 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23546 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| | ||||||||||| ||||||||+||||||||||||||| Sbjct: 23547 TGTCGCGGTCATAGTTATAGTTGGTTTGTTGTTATTTTTTATGGTGGATAATGGTACTAG 23606 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23607 GCAGCATTATGCTTA 23621 >FJ009232 Porcine hemagglutinating encephalomyelitis virus strain HEV-JT06 hemagglutinin-esterase protein gene, complete cds Length = 1275 E-value = 0, Score = 1723, Bitscore = 1554.89, Identities = 1060/1275 (83%), Positives = 1189/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||| ||| ++| |||||| | Sbjct: 1 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTAGTACTTTTGGTTTTCA 59 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 60 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 119 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+|| || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 120 TCGTTCCGACTGTAATCATGTTGTTAACACCAACCCCCGTAATTATTCTTATATGGACCT 179 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 180 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 239 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 240 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 299 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| ||||+| |||||| Sbjct: 300 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCATTAGTGCTGGTAATAATGA 359 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 360 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 419 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+| |||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 420 TCGCAGTCATACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 479 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 + |||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 480 ATGTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 539 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 540 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTTTCAGGTTGTGACGAGTA 599 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 600 TATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 659 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 660 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 719 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 720 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 779 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 780 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 839 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 840 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 899 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 900 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 959 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +|| |||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 960 CTACGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 1019 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 1020 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 1079 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 1080 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 1139 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+ |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 1140 TGATTTACCTATATGTGGTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 1199 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||||||||+||||||||||||||| Sbjct: 1200 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAG 1259 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 1260 GCAGCATTATGCTTA 1274 >AF481863 Porcine hemagglutinating encephalomyelitis virus HE glycoprotein, spike glycoprotein (S), 4.9 kDa nonstructural protein (ns4.9), 122.7 kDa nonstructural protein, small membrane protein E (E), matrix glycoprotein (M), phosphorylated nucleocapsid protein N, and N2 (N2) genes, complete cds Length = 8123 E-value = 0, Score = 1721, Bitscore = 1553.09, Identities = 1060/1275 (83%), Positives = 1188/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||| ||| ++| |||||| | Sbjct: 16 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTAGTACTTTTGGTTTTCA 74 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 75 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 134 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 135 TCGTACCGACTGTAATCATGTTGTTAAAACCAACCCCCGTAATTATTCTTATATGGACCT 194 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 195 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 254 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 255 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATCATTTTTTA 314 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+|||||| |||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 315 TGAGGGTGTTAATTTTACTCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 374 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 375 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 434 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || |||+| |+ || Sbjct: 435 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTCAACCCACCGC 494 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 495 ACTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 554 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 555 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTCTCAGGTTGTGACGAGTA 614 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 615 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 674 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 675 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 734 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 735 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 794 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 795 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 854 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|+ ||||| Sbjct: 855 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAATCTGA 914 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 915 TAACATGACGGCAGTTGCATGTCAACTTCCATACTGTTATTTTCGCAATTCTACTTCCAA 974 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | || ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 975 CTATGTTGGTATCTACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 1034 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 1035 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 1094 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 1095 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 1154 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+|||| |||||||||||+||||| |+ Sbjct: 1155 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATCTTGCTTGGCATTCTTTTAGG 1214 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+|||||||||| |||| +| ||||||||||||||||| ||||+||||||||||| ||| Sbjct: 1215 TGTTGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTATTAG 1274 Query: 1260 GCUGCAUGAUGCUUA 1274 || ||| ||||||| Sbjct: 1275 GCAGCACTATGCTTA 1289 >KY419113 Porcine hemagglutinating encephalomyelitis virus strain PHEV CoV USA-15TOSU1582, complete genome Length = 29900 E-value = 0, Score = 1711, Bitscore = 1544.07, Identities = 1058/1275 (82%), Positives = 1186/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| ||||| || |+|| ||||||| ++| |||||||| Sbjct: 21574 ATGGTTTTGCTTCCTAGATTCTGT-CTAGTCTGCAGCATCATTGGTACTTTTGGTTTTGA 21632 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| |||||||||||||||||| ||||| Sbjct: 21633 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGAAGATTGGTTTTTATTTGGGGACAG 21692 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||| ||||+ |||||+|| ||+||||||||+||||||||||| Sbjct: 21693 TCGTACCGACTGTAATCATGTCGTTAAAACCAACCCTCGTAATTATTCTTATATGGACCT 21752 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||| ||+||||| Sbjct: 21753 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCTATTTTTAG 21812 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 21813 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATCATTTTTTA 21872 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 21873 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 21932 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 21933 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 21992 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| || ||+||||| || || |||+| |+ || Sbjct: 21993 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTATACAATGGGTCAGCTCAACCCACCGC 22052 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22053 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22112 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22113 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTCTCAGGTTGTGACGAGTA 22172 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||| ||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22173 TATCGTACCACTTTGTGTTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22232 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22233 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22292 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||||| Sbjct: 22293 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTT 22352 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 22353 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 22412 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+||||||||||| |||||+||+||||||||||+||||+++|++||||| Sbjct: 22413 TAAGGTTTTTACGCCTGTACAGGTGGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 22472 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||||||||||||| |+|| Sbjct: 22473 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGTAATTCTACTTCCAA 22532 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | || ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 22533 CTATGTTGGTATCTACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 22592 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 22593 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 22652 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 22653 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 22712 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| |||||+||||| ||||||||||+||||| |+ Sbjct: 22713 TGATTCACCTATATGTGTTTATGACCCATTACCAATTATTCTGCTTGGCATTCTTTTAGG 22772 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+|||||||||| ||| Sbjct: 22773 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTGTTAG 22832 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 22833 GCAGCATTATGCTTA 22847 >KY419109 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU1655/2015, complete genome Length = 29906 E-value = 0, Score = 1711, Bitscore = 1544.07, Identities = 1058/1275 (82%), Positives = 1186/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| ||||| || |+|| ||||||| ++| |||||||| Sbjct: 21580 ATGGTTTTGCTTCCTAGATTCTGT-CTAGTCTGCAGCATCATTGGTACTTTTGGTTTTGA 21638 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| |||||||||||||||||| ||||| Sbjct: 21639 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGAAGATTGGTTTTTATTTGGGGACAG 21698 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||| ||||+ |||||+|| ||+||||||||+||||||||||| Sbjct: 21699 TCGTACCGACTGTAATCATGTCGTTAAAACCAACCCTCGTAATTATTCTTATATGGACCT 21758 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||| ||+||||| Sbjct: 21759 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCTATTTTTAG 21818 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 21819 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATCATTTTTTA 21878 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 21879 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 21938 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 21939 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 21998 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| || ||+||||| || || |||+| |+ || Sbjct: 21999 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTATACAATGGGTCAGCTCAACCCACCGC 22058 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22059 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22118 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22119 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTCTCAGGTTGTGACGAGTA 22178 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||| ||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22179 TATCGTACCACTTTGTGTTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22238 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22239 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22298 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||||| Sbjct: 22299 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTT 22358 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 22359 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 22418 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+||||||||||| |||||+||+||||||||||+||||+++|++||||| Sbjct: 22419 TAAGGTTTTTACGCCTGTACAGGTGGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 22478 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||||||||||||| |+|| Sbjct: 22479 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGTAATTCTACTTCCAA 22538 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | || ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 22539 CTATGTTGGTATCTACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 22598 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 22599 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 22658 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 22659 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 22718 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| |||||+||||| ||||||||||+||||| |+ Sbjct: 22719 TGATTCACCTATATGTGTTTATGACCCATTACCAATTATTCTGCTTGGCATTCTTTTAGG 22778 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+|||||||||| ||| Sbjct: 22779 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTGTTAG 22838 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 22839 GCAGCATTATGCTTA 22853 >KY419107 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU1209/2015, complete genome Length = 29866 E-value = 0, Score = 1711, Bitscore = 1544.07, Identities = 1058/1275 (82%), Positives = 1186/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| ||||| || |+|| ||||||| ++| |||||||| Sbjct: 21540 ATGGTTTTGCTTCCTAGATTCTGT-CTAGTCTGCAGCATCATTGGTACTTTTGGTTTTGA 21598 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| |||||||||||||||||| ||||| Sbjct: 21599 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGAAGATTGGTTTTTATTTGGGGACAG 21658 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||| ||||+ |||||+|| ||+||||||||+||||||||||| Sbjct: 21659 TCGTACCGACTGTAATCATGTCGTTAAAACCAACCCTCGTAATTATTCTTATATGGACCT 21718 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||| ||+||||| Sbjct: 21719 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCTATTTTTAG 21778 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 21779 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATCATTTTTTA 21838 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 21839 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 21898 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 21899 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 21958 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| || ||+||||| || || |||+| |+ || Sbjct: 21959 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTATACAATGGGTCAGCTCAACCCACCGC 22018 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22019 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22078 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22079 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTCTCAGGTTGTGACGAGTA 22138 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||| ||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22139 TATCGTACCACTTTGTGTTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22198 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22199 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22258 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||||| Sbjct: 22259 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTT 22318 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 22319 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 22378 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+||||||||||| |||||+||+||||||||||+||||+++|++||||| Sbjct: 22379 TAAGGTTTTTACGCCTGTACAGGTGGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 22438 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||||||||||||| |+|| Sbjct: 22439 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGTAATTCTACTTCCAA 22498 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | || ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 22499 CTATGTTGGTATCTACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 22558 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 22559 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 22618 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 22619 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 22678 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| |||||+||||| ||||||||||+||||| |+ Sbjct: 22679 TGATTCACCTATATGTGTTTATGACCCATTACCAATTATTCTGCTTGGCATTCTTTTAGG 22738 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+|||||||||| ||| Sbjct: 22739 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTGTTAG 22798 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 22799 GCAGCATTATGCTTA 22813 >KY419106 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU1785/2015, complete genome Length = 29866 E-value = 0, Score = 1711, Bitscore = 1544.07, Identities = 1058/1275 (82%), Positives = 1186/1275 (93%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| ||||| || |+|| ||||||| ++| |||||||| Sbjct: 21540 ATGGTTTTGCTTCCTAGATTCTGT-CTAGTCTGCAGCATCATTGGTACTTTTGGTTTTGA 21598 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| |||||||||||||||||| ||||| Sbjct: 21599 AAACCCTCCTACCAATGTTGTTTCACATTTTAATGAAGATTGGTTTTTATTTGGGGACAG 21658 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||| ||||+ |||||+|| ||+||||||||+||||||||||| Sbjct: 21659 TCGTACCGACTGTAATCATGTCGTTAAAACCAACCCTCGTAATTATTCTTATATGGACCT 21718 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||| ||+||||| Sbjct: 21719 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCTATTTTTAG 21778 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 21779 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATCATTTTTTA 21838 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 21839 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 21898 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 21899 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 21958 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| || ||+||||| || || |||+| |+ || Sbjct: 21959 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTATACAATGGGTCAGCTCAACCCACCGC 22018 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22019 ATTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22078 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||||||||||||||| Sbjct: 22079 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTCTCAGGTTGTGACGAGTA 22138 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||| ||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22139 TATCGTACCACTTTGTGTTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22198 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22199 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22258 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||||| Sbjct: 22259 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTT 22318 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 22319 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 22378 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+||||||||||| |||||+||+||||||||||+||||+++|++||||| Sbjct: 22379 TAAGGTTTTTACGCCTGTACAGGTGGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 22438 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||||||||||||| |+|| Sbjct: 22439 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGTAATTCTACTTCCAA 22498 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | || ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 22499 CTATGTTGGTATCTACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 22558 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 22559 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 22618 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 22619 CACCGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 22678 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| |||||+||||| ||||||||||+||||| |+ Sbjct: 22679 TGATTCACCTATATGTGTTTATGACCCATTACCAATTATTCTGCTTGGCATTCTTTTAGG 22738 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+|||||||||| ||| Sbjct: 22739 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTGTTAG 22798 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 22799 GCAGCATTATGCTTA 22813 >KY419112 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU1765/2015, complete genome Length = 30531 E-value = 0, Score = 1679, Bitscore = 1515.21, Identities = 1052/1275 (82%), Positives = 1179/1275 (92%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22221 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTACTTTTGGTTTTGA 22279 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||| ||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22280 AAACCCTCCTATCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22339 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ ||||| ||||+|||| |||+||||||||||| Sbjct: 22340 TCGTACCGACTGTAATCATGTTGTTAAAACCAAATCCCGTAATTTTTCTTATATGGACCT 22399 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22400 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22459 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22460 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22519 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+| |+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 22520 TGAGGGTGTCAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 22579 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||| ||+|||||||||| ||||||||+|| Sbjct: 22580 TATATGGATGCAGAATAAAGGCTTATTTTACACTGAGGTTTATAAGAAGATGGCTGTTTA 22639 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| |||| |||||+||||| || || |||+| |+ || Sbjct: 22640 TCGCAGTCTTACTTTAGTTAATGTGTCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22699 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| ||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22700 ACTTTGTAAGTCTGGCCGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22759 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+||| |+| ||||||||||||||||| Sbjct: 22760 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTCTTCTCTCAGGTTGTGACGAGTA 22819 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22820 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22879 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22880 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22939 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 22940 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 22999 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23000 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCG 23059 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23060 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGA 23119 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||||||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23120 TAACATGACGGCAGTTGCTTGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCTAA 23179 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+|||||||| |||||||||||+||||| Sbjct: 23180 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTCACTAGCATACTCAGTGG 23239 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23240 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23299 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||| +| ++|+| ||| | ||+||||||||||||++||||| + | | Sbjct: 23300 CACCGTTTGGCCTCGTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCTTC 23359 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 ||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23360 GGATTTACCCATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23419 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+||||||||||| ||| Sbjct: 23420 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTATTAG 23479 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23480 GCAGCATTATGCTTA 23494 >KY419105 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU0582/2015, complete genome Length = 30513 E-value = 0, Score = 1679, Bitscore = 1515.21, Identities = 1052/1275 (82%), Positives = 1179/1275 (92%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22225 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTACTTTTGGTTTTGA 22283 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||| ||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22284 AAACCCTCCTATCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22343 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ ||||| ||||+|||| |||+||||||||||| Sbjct: 22344 TCGTACCGACTGTAATCATGTTGTTAAAACCAAATCCCGTAATTTTTCTTATATGGACCT 22403 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22404 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22463 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22464 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22523 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+| |+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 22524 TGAGGGTGTCAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 22583 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||| ||+|||||||||| ||||||||+|| Sbjct: 22584 TATATGGATGCAGAATAAAGGCTTATTTTACACTGAGGTTTATAAGAAGATGGCTGTTTA 22643 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| |||| |||||+||||| || || |||+| |+ || Sbjct: 22644 TCGCAGTCTTACTTTAGTTAATGTGTCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22703 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| ||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22704 ACTTTGTAAGTCTGGCCGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22763 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+||| |+| ||||||||||||||||| Sbjct: 22764 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTCTTCTCTCAGGTTGTGACGAGTA 22823 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22824 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22883 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22884 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22943 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 22944 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 23003 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23004 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCG 23063 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23064 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGA 23123 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||||||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23124 TAACATGACGGCAGTTGCTTGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCTAA 23183 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+|||||||| |||||||||||+||||| Sbjct: 23184 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTCACTAGCATACTCAGTGG 23243 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23244 TTTGTTGTATGATTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23303 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||| +| ++|+| ||| | ||+||||||||||||++||||| + | | Sbjct: 23304 CACCGTTTGGCCTCGTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCTTC 23363 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 ||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23364 GGATTTACCCATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23423 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+||||||||||| ||| Sbjct: 23424 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTATTAG 23483 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23484 GCAGCATTATGCTTA 23498 >KY419104 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU0331/2015, complete genome Length = 30530 E-value = 0, Score = 1679, Bitscore = 1515.21, Identities = 1052/1275 (82%), Positives = 1179/1275 (92%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22221 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTACTTTTGGTTTTGA 22279 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||| ||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22280 AAACCCTCCTATCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22339 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ ||||| ||||+|||| |||+||||||||||| Sbjct: 22340 TCGTACCGACTGTAATCATGTTGTTAAAACCAAATCCCGTAATTTTTCTTATATGGACCT 22399 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22400 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22459 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22460 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22519 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+| |+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 22520 TGAGGGTGTCAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 22579 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||| ||+|||||||||| ||||||||+|| Sbjct: 22580 TATATGGATGCAGAATAAAGGCTTATTTTACACTGAGGTTTATAAGAAGATGGCTGTTTA 22639 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| |||| |||||+||||| || || |||+| |+ || Sbjct: 22640 TCGCAGTCTTACTTTAGTTAATGTGTCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22699 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| ||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22700 ACTTTGTAAGTCTGGCCGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22759 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+||| |+| ||||||||||||||||| Sbjct: 22760 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTCTTCTCTCAGGTTGTGACGAGTA 22819 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22820 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22879 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22880 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22939 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 22940 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 22999 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23000 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCG 23059 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23060 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGA 23119 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||||||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23120 TAACATGACGGCAGTTGCTTGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCTAA 23179 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+|||||||| |||||||||||+||||| Sbjct: 23180 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTCACTAGCATACTCAGTGG 23239 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23240 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23299 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||| +| ++|+| ||| | ||+||||||||||||++||||| + | | Sbjct: 23300 CACCGTTTGGCCTCGTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCTTC 23359 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 ||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23360 GGATTTACCCATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23419 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+||||||||||| ||| Sbjct: 23420 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTATTAG 23479 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23480 GCAGCATTATGCTTA 23494 >KY419103 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU25049/2015, complete genome Length = 30632 E-value = 0, Score = 1675, Bitscore = 1511.61, Identities = 1050/1275 (82%), Positives = 1180/1275 (92%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| |||||||+++| |||||||| Sbjct: 22304 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTAGTTTTGGTTTTGA 22362 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||| ||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22363 AAACCCTCCTATCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22422 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ || ||+|||| +||||||||+||||||||||| Sbjct: 22423 TCGTACCGACTGTAATCATGTTGTTAAAACAAACCCCCCTAATTATTCTTATATGGACCT 22482 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 22483 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 22542 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22543 GAGTTTTCACTTTACTGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22602 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 22603 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTCTTGGTAATAATGA 22662 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||||||+|||||||||| ||||||||+|| Sbjct: 22663 TATATGGATGCAGAATAAAGGCTTATTTTACACTCAGGTTTATAAGAAGATGGCTGTTTA 22722 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| ||||| |||||+||||| || || ||+| |+ Sbjct: 22723 TCGCAGTCTTACTTTAGTTAATGTGCCATACGTTTACAATGGGTCAGCTAAACCCACCTT 22782 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22783 ACTTTGTAAGTCTGGCAGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22842 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|| | |+| ||||| ||||||||||| Sbjct: 22843 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTCTTTCTTTCAGGCTGTGACGAGTA 22902 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+||||| |||||||||||||| Sbjct: 22903 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACTAAGTATTATGATGA 22962 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22963 TAGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 23022 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+|||||||| |||||||||+||+||||||||||+|||||| | Sbjct: 23023 CATTACCACTGGTTTTGATTTTAATTGCCATTATTTAGTTCTACCCTCTGGTAATTATCT 23082 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+|||||| |||||||||||||+||+||||||||||||||||++||||| Sbjct: 23083 AGCCATTTCAAATGAGCTACTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCG 23142 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23143 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGA 23202 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||| ||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23203 TAACATGACGGCAGTTGCATGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCCAA 23262 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+||||||||||||||||||||+||||| Sbjct: 23263 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACTAGCATACTCAGTGG 23322 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23323 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23382 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || |+|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 23383 CACTGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCCTC 23442 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23443 TGATTTACCTATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23502 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+|||||||||| |||| +| ||||||||||| ||||| ||||+||||||||||| ||| Sbjct: 23503 TGTTGCGGTCATAGTTATAGTTGTTTTGTTGTTTTATTTCATGGTGGATAATGGTATTAG 23562 Query: 1260 GCUGCAUGAUGCUUA 1274 || ||| |||| || Sbjct: 23563 GCAACATTATGCCTA 23577 >KY419110 Porcine hemagglutinating encephalomyelitis virus strain PHEV-CoV/swine/USA/15TOSU1582/2015, complete genome Length = 30515 E-value = 0, Score = 1674, Bitscore = 1510.71, Identities = 1051/1275 (82%), Positives = 1178/1275 (92%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+||||||||++|||||| ||| |||||| || |+|| ||||||| ++| |||||||| Sbjct: 22227 ATGTTTTTGCTTCCTAGATTCTGT-CTAGTTTGCAGCATCATTGGTACTTTTGGTTTTGA 22285 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||| ||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 22286 AAACCCTCCTATCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 22345 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ ||||| ||||+|||| |||+||||||||||| Sbjct: 22346 TCGTACCGACTGTAATCATGTTGTTAAAACCAAATCCCGTAATTTTTCTTATATGGACCT 22405 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+|| +|||||++||+|||+|||||||||+|||||||||||||||| ||+||||| Sbjct: 22406 TAATCCTGCTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCTATTTTTAG 22465 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||||||||||||||| ||||||||+|||||+||+||+|| Sbjct: 22466 GAGTTTTCACTTTACCGATTTTTATAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 22525 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+| |+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 22526 TGAGGGTGTCAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 22585 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| ||||||||||||||||||||+||||||||| ||+|||||||||| ||||||||+|| Sbjct: 22586 TATATGGATGCAGAATAAAGGCTTATTTTACACTGAGGTTTATAAGAAGATGGCTGTTTA 22645 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||||||+|||||+|| ||||+||| |||| |||||+||||| || || |||+| |+ || Sbjct: 22646 TCGCAGTCTTACTTTAGTTAATGTGTCATACGTTTACAATGGGTCAGCTCAACCCACCGC 22705 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| ||||| ||||||| ||+||+||+||+||++| ||||| |||++ Sbjct: 22706 ACTTTGTAAGTCTGGCCGTTTAATTCTTAACAATCCTGCATATATAGCCCGTGAGGCTAA 22765 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+||| |+| ||||||||||||||||| Sbjct: 22766 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTCTTCTCTCAGGTTGTGACGAGTA 22825 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+|||||||||||||||||||| Sbjct: 22826 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACAAAGTATTATGATGA 22885 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22886 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTCTCAATTCTACTGAAAC 22945 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||| | Sbjct: 22946 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATCT 23005 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||||||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 23006 AGCCATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCG 23065 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||||||+|||||+||+||||||||||+||||+++|++||||| Sbjct: 23066 TAAGGTTTTTACGCCTGTACAGGTTGTTGATTCTCGGTGGAACAATGCCAGGCAGTCTGA 23125 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|||||||||||+||||||||+|||| +|| |||||||||||||| ||||||||| |+|| Sbjct: 23126 TAACATGACGGCAGTTGCTTGTCAACTCCCATACTGTTATTTTCGCAATTCTACTTCTAA 23185 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+|||||||| |||||||||||+||||| Sbjct: 23186 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTCACTAGCATACTCAGTGG 23245 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 23246 TTTGTTGTATGATTCACCTTGTTTCTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 23305 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || +|+||||||| +| ++|+| ||| | ||+||||||||||||++||||| + | | Sbjct: 23306 CACCGTTTGGCCTCGTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTTCTTC 23365 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 ||| +|||+|| |||+| |||||+|| ||||||+||||| ||||||||||+||||| |+ Sbjct: 23366 GGATTTACCCATATGTGTTTATGACCCACTACCAATTATTCTGCTTGGCATTCTTTTAGG 23425 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ ||||||||| |||| +| ||||||||||||||||| ||||+||||||||||| ||| Sbjct: 23426 TGTCGCGGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTATTAG 23485 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 23486 GCAGCATTATGCTTA 23500 >OL542832 Porcine hemagglutinating encephalomyelitis virus isolate GNU-2113, complete genome Length = 29982 E-value = 0, Score = 1633, Bitscore = 1473.74, Identities = 1042/1275 (81%), Positives = 1171/1275 (91%), Gaps = 2/1275 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUU-UGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGA 59 |||+ |||||||++|| ||| ||| ||| || || |+|| ||||||| ++| |||||||| Sbjct: 21653 ATGGCTTTGCTTCCTAAATTCTGT-CTAATTTGCAGCATCATTGGTACTTTTGGTTTTGA 21711 Query: 60 HAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAG 119 +|||||||||||||||+||||+|| ||||| |||| ||||||||||||||||| ||||| Sbjct: 21712 TAACCCTCCTACCAATGTTGTTTCACATTTTAATGATGATTGGTTTTTATTTGGGGACAG 21771 Query: 120 UCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCU 179 |||+ | || |||||+||||||||||+ |||||+|||||+||||||||+||||||||||| Sbjct: 21772 TCGTACTGACTGTAATCATGTTGTTAAAACCAACCCCCGTAATTATTCTTATATGGACCT 21831 Query: 180 WAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAG 239 +||+||+| +|||||++||+|||+|||||||||+|||||||||||||||||||+||||| Sbjct: 21832 TAATCCTGTTCTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAG 21891 Query: 240 GAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUA 299 |||||||||||||||+|||||||| ||||||||||| ||||||||+|||||+||+||+|| Sbjct: 21892 GAGTTTTCACTTTACCGATTTTTACAATTACACAGGTGAAGGTCAACAAATTATTTTTTA 21951 Query: 300 UGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGA 359 |||||||+|||+||||||||||+||||||||||||||||||+ |+| |||+| |||||| Sbjct: 21952 TGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACTAGTGTTGGTAATAATGA 22011 Query: 360 UAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUA 419 ||| |||||||| |||||||||||+||||| ||||||+|||||| ||| ||||||||+|| Sbjct: 22012 TATATGGATGCATAATAAAGGCTTATTTTATACTCAGGTTTATATGAAGATGGCTGTTTA 22071 Query: 420 UCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGC 479 ||| ||+|||||+|| ||||+||| ||||| || ||+||||| || || |||+| |+ || Sbjct: 22072 TCGGAGTCTTACTTTAGTTAATGTGCCATACGTCTACAATGGGTCAGCTCAACCCACTGC 22131 Query: 480 YHUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWR 539 +||||||| |+||| |||||| ||||||||||+||+ |+||+||++| ||||| |||++ Sbjct: 22132 ACTTTGTAAGTCTGGCAGTTTAATTCTTAATAATCCTACATATATAGCCCGTGAGGCTAA 22191 Query: 540 UKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUA 599 |+|++|+||||||||||||||| +|||||| ||+|||| |+| ||||| ||||||||||| Sbjct: 22192 TGTGGGTGATTATTATTATAAGTCTGAAGCAGATTTTTCTCTATCAGGCTGTGACGAGTA 22251 Query: 600 UAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGA 659 |||||||||||||||||||||+||+||||||||+|||||+||||| |||||||||||||| Sbjct: 22252 TATCGTACCACTTTGTATTTTTAATGGCAAGTTTTTGTCGAATACTAAGTATTATGATGA 22311 Query: 660 YAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAAC 719 +|||||||||||||||||||||||+||||||||||||||||||+||||||++|||+|||| Sbjct: 22312 TAGTCAATATTATTTTAATAAAGACACTGGTGTTATTTATGGTTTCAATTCTACTGAAAC 22371 Query: 720 CAUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUU 779 ||||||||||||||||||+||||||||||||||||||+||+||||||||||+|||||||| Sbjct: 22372 CATTACCACTGGTTTTGATTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTT 22431 Query: 780 AGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCG 839 ||| ||||||||+||||||||||||||||||||+||+||||||||||||||||++||||| Sbjct: 22432 AGCTATTTCAAATGAGCTATTGTTAACTGTTCCCACTAAAGCAATCTGTCTTAATAAGCG 22491 Query: 840 UAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGA 899 ||||| ||||||+|||||||| ||+|||||+||+||||||||||+||| +++|++||||| Sbjct: 22492 TAAGGTTTTTACGCCTGTACAAGTTGTTGATTCGCGGTGGAACAATGCTAGGCAGTCTGA 22551 Query: 900 YAACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAA 959 +|| ||||||||+||||| ||+|||| +|| || ||||||||||| ||||| ||| |+|| Sbjct: 22552 TAATATGACGGCAGTTGCATGTCAACTCCCATATTGTTATTTTCGCAATTCAACTTCCAA 22611 Query: 960 YUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGG 1019 +||||||||| | | ||| | || ||+|| ||+||||||||||| ||||||||+||||| Sbjct: 22612 CTATGTTGGTATCCACGATGTTAACCATGGTGATGCTGGTTTTACCAGCATACTCAGTGG 22671 Query: 1020 UUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAG 1079 |||||| |||||+|||||+|||||+||+|||||+|||||||||||||||+|+|||+| || Sbjct: 22672 TTTGTTGTATGATTCACCTTGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTCAG 22731 Query: 1080 CAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCC 1139 || |+|+||||||||+| ++|+| ||| | ||+||||||||||||++||||| + |+ | Sbjct: 22732 CACTGTTTGGCCTCTTTTTCCTTTTGGTAATTGCCCTACTGCTGCTAGTATTATTCCCTC 22791 Query: 1140 UGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGK 1199 |||| +| |+||||||+| |||||+|| | |||+||||| ||||||||||+||||| |+ Sbjct: 22792 TGATTTATCTATTTGTGTTTATGACCCATTGCCAATTATTCTGCTTGGCATTCTTTTAGG 22851 Query: 1200 UGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAG 1259 ||+ || |||||| |||| +| ||||||||||||||||| ||||+||||||||||| ||| Sbjct: 22852 TGTCGCAGTCATAGTTATAGTTGTTTTGTTGTTATATTTCATGGTGGATAATGGTATTAG 22911 Query: 1260 GCUGCAUGAUGCUUA 1274 || |||| ||||||| Sbjct: 22912 GCAGCATTATGCTTA 22926 Database: nr Query=17. HE - realigned consensus sequence Length=1206 Score E Sequences producing significant alignments: (Bits) Value MW310547 Betacoronavirus 1 isolate 2382 hemagglutinin-estera... 1774.0 0 ALIGNMENTS >MW310547 Betacoronavirus 1 isolate 2382 hemagglutinin-esterase gene, partial cds Length = 1206 E-value = 0, Score = 1966, Bitscore = 1774.0, Identities = 1064/1206 (88%), Positives = 1197/1206 (99%), Gaps = 0/1206 (0%) Frame = +1 Query: 19 UUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAHAACCCUCCUACCAAUKUU 78 |||||+|||||||||||+||||||||||+++||||||||||+|||||||||||||||+|| Sbjct: 1 TTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGATAACCCTCCTACCAATGTT 60 Query: 79 GUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGUCGYUCAGAUUGUAAYCAU 138 ||+||+||||||||||||||||||||||||||||||||||||||+|||||||||||+||| Sbjct: 61 GTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGTCGTTCAGATTGTAATCAT 120 Query: 139 GUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCCHGCCYUGUGURRU 198 |||||||+||||||+|||||+||||||||+|||||||||||+||+||+|||+|||||++| Sbjct: 121 GTTGTTACTACCAATCCCCGTAATTATTCTTATATGGACCTTAACCCCGCCTTGTGTGAT 180 Query: 199 UYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUUUCACUUUACBGAU 258 |+|||+|||||||||+|||||||||||||||||||+||||||||||||||||||||+||| Sbjct: 181 TCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTTTCACTTTACCGAT 240 Query: 259 UUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGGUSUUARUUUUACG 318 ||||||||||||||||||||||||||+|||||+||+||+|||||||||+|||+||||||| Sbjct: 241 TTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTTTATGAGGGTGTTAATTTTACG 300 Query: 319 CCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUGGAUGCAGAAUAAA 378 |||+||||||||||||| ||||+||+||||||+||||||||||||||||||||||||||| Sbjct: 301 CCTCATCATGCCTTTAAGTGCACCACTTCTGGCAGTAATGATATTTGGATGCAGAATAAA 360 Query: 379 GGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAGYCUUACWUUUGUU 438 |||||+||||| ||||||+|||||||||||||||||||+||||||||+|||||+|||||| Sbjct: 361 GGCTTGTTTTATACTCAGGTTTATAAGAATATGGCTGTGTATCGCAGCCTTACTTTTGTT 420 Query: 439 AVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUGUAAAUYUGGUAGU 498 |+|||||||||||||||+|||||||||||||||+|+|+|||++|||||||||+||||||| Sbjct: 421 AATGTACCATATGTTTATAATGGCTCTGCACAACCTACAGCCCTTTGTAAATCTGGTAGT 480 Query: 499 UUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRUKUDRGKGAUUAUUAUUAU 558 ||||||||||||||+||+||+||+||++|||||||||||++|+|++|+|||||||||||| Sbjct: 481 TTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAATTTTGGGGATTATTATTAT 540 Query: 559 AAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAUAUCGUACCACUUUGUAUU 618 ||||+|||||||||+||||||+|||||||||||||||||||||||||||||||||||||| Sbjct: 541 AAGGTTGAAGCTGACTTTTATTTGTCAGGTTGTGACGAGTATATCGTACCACTTTGTATT 600 Query: 619 UUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAYAGUCAAUAUUAUUUUAAU 678 ||+||+||||||||+|||||+ ||||||||||||||||||+|||||||||||||||||| Sbjct: 601 TTTAACGGCAAGTTTTTGTCGTCTACAAAGTATTATGATGATAGTCAATATTATTTTAAT 660 Query: 679 AAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACCAUUACCACUGGUUUUGAY 738 |||||+||||||||||||||||||+||||| ++|||+||||||||||||||||||| ||+ Sbjct: 661 AAAGACACTGGTGTTATTTATGGTCTCAATGCTACTCAAACCATTACCACTGGTTTCGAT 720 Query: 739 UUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUA 798 ||||||||||||||||||+||+||||||||||+||||||||||||||||| ||+|||||| Sbjct: 721 TTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTAGCCATTTCTAATGAGCTA 780 Query: 799 UUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUA 858 ||||||||||||||+||+||||||||||||||||++|||||||||||||||||+|||||| Sbjct: 781 TTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGTAAGGATTTTACGCCTGTA 840 Query: 859 CAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAYAACAUGACGGCDGUUGCU 918 |||||+|||||+||+||||||||||+||||+++|++|||||+|||||||||||+|||||| Sbjct: 841 CAGGTTGTTGATTCCCGGTGGAACAATGCCAGGCAGTCTGATAACATGACGGCAGTTGCT 900 Query: 919 UGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAU 978 ||+|||||+|||||||||||||||||||||||||||||+||+|||||||||||||||||| Sbjct: 901 TGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAATTATGTTGGTGTTTATGAT 960 Query: 979 AUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCY 1038 ||||||||+|||||+||||||||||||||||||||+|||||||||||||||||+|||||+ Sbjct: 961 ATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAGTGGTTTGTTATATGACTCACCT 1020 Query: 1039 UGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAY 1098 |||||+||+|||||+|||||||||||||||+|+|||+||||||||+|+||||||||+||+ Sbjct: 1021 TGTTTTTCGCAGCAAGGTGTTTTTAGGTATGATAATGTTAGCAGTGTCTGGCCTCTCTAC 1080 Query: 1099 YCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCUGAURYACCYAUUUGUKUG 1158 +|+|||||+||+||+||||| ||||||+ ||||||+||+||||||++|||+||||||+|| Sbjct: 1081 CCTTATGGCAGATGCCCTACAGCTGCTGTTATTAATACACCTGATGTACCCATTTGTGTG 1140 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1141 TATGATCCTCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 1200 Query: 1219 SUAGUU 1224 +||||| Sbjct: 1201 GTAGTT 1206 Database: nr Query=17. HE - realigned consensus sequence Length=326 Score E Sequences producing significant alignments: (Bits) Value JF795434 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-67 hem... 496.311 1.48e-135 JF795435 Betacoronavirus 1 strain BCoV/WD/2008/WDBR-VM hemag... 487.294 7.65e-133 ALIGNMENTS >JF795434 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-E-67 hemagglutinin-esterase gene, partial cds Length = 327 E-value = 1.48e-135, Score = 549, Bitscore = 496.311, Identities = 292/326 (89%), Positives = 326/326 (100%), Gaps = 0/326 (0%) Frame = +1 Query: 169 UAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAAC 228 |||||||||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||| Sbjct: 2 TATATGGACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAAC 61 Query: 229 UCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAA 288 |||||+||||||||||||||||||||+|||||||||||||||||||||||||||||+||| Sbjct: 62 TCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAA 121 Query: 289 AUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCU 348 ||+||+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+|||| Sbjct: 122 ATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCT 181 Query: 349 GGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAU 408 ||+||||||||||||||||||||||||||||||||+||||||||||||+||||||||||| Sbjct: 182 GGTAGTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAAT 241 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+|||||||+|||||||||||||||+|||||||||||| Sbjct: 242 ATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCA 301 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGG 494 |||+|+|+|||++|||||||||+||| Sbjct: 302 CAATCTACAGCCCTTTGTAAATCTGG 327 >JF795435 Betacoronavirus 1 strain BCoV/WD/2008/WDBR-VM hemagglutinin-esterase gene, partial cds Length = 327 E-value = 7.65e-133, Score = 539, Bitscore = 487.294, Identities = 290/326 (88%), Positives = 324/326 (99%), Gaps = 0/326 (0%) Frame = +1 Query: 169 UAUAUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAAC 228 |||||||||||+||+||+|||+|||||++||+|||+|||||||||+|||||||||||||| Sbjct: 2 TATATGGACCTTAATCCTGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAAC 61 Query: 229 UCCAUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAA 288 |||||+||||||||||||||||||||+|||||||||||||||||||||||||||||+||| Sbjct: 62 TCCATTTTTAGGAGTTTTCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAA 121 Query: 289 AUYAUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCU 348 ||+||+||+|||||||||+|||+||||||||||+||||||||||||||||||+||+|||| Sbjct: 122 ATTATTTTCTATGAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCT 181 Query: 349 GGYAGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAU 408 ||+||||||||||||||||||||||||||||||||+||||||||||||+|||||||||| Sbjct: 182 GGTAGTAATGATATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAAC 241 Query: 409 AUGGCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCA 468 ||||||||+||||||||+|||||+|||||||+|||| ||||||||||+|||||||||||| Sbjct: 242 ATGGCTGTGTATCGCAGCCTTACTTTTGTTAATGTATCATATGTTTATAATGGCTCTGCA 301 Query: 469 CAAYCKAHAGCYHUUUGUAAAUYUGG 494 |||+|+|+|||++|||||||||+||| Sbjct: 302 CAATCTACAGCCCTTTGTAAATCTGG 327 Database: nr Query=17. HE - realigned consensus sequence Length=117 Score E Sequences producing significant alignments: (Bits) Value GU001947 Bovine coronavirus Bubalus/155/ITA/2008 spike prote... 190.64 8.21e-44 GU001946 Bovine coronavirus Bubalus/153/ITA/2008 spike prote... 190.64 8.21e-44 GU001945 Bovine coronavirus Bubalus/82/ITA/2008 spike protei... 190.64 8.21e-44 GU001944 Bovine coronavirus Bubalus/339/ITA/2007 spike prote... 181.623 4.25e-41 ALIGNMENTS >GU001947 Bovine coronavirus Bubalus/155/ITA/2008 spike protein gene, partial cds Length = 817 E-value = 8.21e-44, Score = 210, Bitscore = 190.64, Identities = 109/117 (93%), Positives = 117/117 (100%), Gaps = 0/117 (0%) Frame = +1 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 60 Query: 1219 SUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 +||||||||||||||||||||||||+||||||||||||||||||||||||||||||| Sbjct: 61 GTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGGCTGCATGATGCTTAG 117 >GU001946 Bovine coronavirus Bubalus/153/ITA/2008 spike protein gene, partial cds Length = 817 E-value = 8.21e-44, Score = 210, Bitscore = 190.64, Identities = 109/117 (93%), Positives = 117/117 (100%), Gaps = 0/117 (0%) Frame = +1 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGTTGTTGCGGTCATAATTATT 60 Query: 1219 SUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 +||||||||||||||||||||||||+||||||||||||||||||||||||||||||| Sbjct: 61 GTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGGCTGCATGATGCTTAG 117 >GU001945 Bovine coronavirus Bubalus/82/ITA/2008 spike protein gene, partial cds Length = 817 E-value = 8.21e-44, Score = 210, Bitscore = 190.64, Identities = 109/117 (93%), Positives = 117/117 (100%), Gaps = 0/117 (0%) Frame = +1 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+||||||||||||||||+|||||||+||+|||||||||||||||| Sbjct: 1 TATGATCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGTGTTGCGGTCATAATTATT 60 Query: 1219 SUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 +||||||||||||||||||||||||+||||||||||||||||||||||||||||||| Sbjct: 61 GTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGGCTGCATGATGCTTAG 117 >GU001944 Bovine coronavirus Bubalus/339/ITA/2007 spike protein gene, partial cds Length = 817 E-value = 4.25e-41, Score = 200, Bitscore = 181.623, Identities = 107/117 (91%), Positives = 115/117 (98%), Gaps = 0/117 (0%) Frame = +1 Query: 1159 UAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUU 1218 |||||+||+||||||+|||||||||| | |||+|||||||+||+|||||||||||||||| Sbjct: 1 TATGACCCGCTACCAATTATTTTGCTCGTCATTCTTTTGGGTGTTGCGGTCATAATTATT 60 Query: 1219 SUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 +||||||||||||||||||||||||+||||||||||||||||||||||||||||||| Sbjct: 61 GTAGTTTTGTTGTTATATTTTATGGTGGATAATGGTACTAGGCTGCATGATGCTTAG 117 Database: nr Query=17. HE - realigned consensus sequence Length=1265 Score E Sequences producing significant alignments: (Bits) Value OL840243 Bovine coronavirus isolate KCD CW11 2021 hemaggluti... 1892.12 0 ALIGNMENTS >OL840243 Bovine coronavirus isolate KCD CW11 2021 hemagglutinin-esterase protein gene, partial cds Length = 1265 E-value = 0, Score = 2097, Bitscore = 1892.12, Identities = 1124/1265 (88%), Positives = 1261/1265 (99%), Gaps = 0/1265 (0%) Frame = +1 Query: 1 AUGKUUUUGCUUYYUAGAUUUGUHCUAGUUAGCUGYAUAAUUGGUAKYYUAGGUUUUGAH 60 |||+||||||||+ |||||||||+|||||||||||+||||||||||+++||||||||||+ Sbjct: 1 ATGTTTTTGCTTCATAGATTTGTTCTAGTTAGCTGCATAATTGGTAGCCTAGGTTTTGAC 60 Query: 61 AACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUUGGUGACAGU 120 |||||||||||||||+||||+||+|||||||||||||||||||||||||||||||||||| Sbjct: 61 AACCCTCCTACCAATGTTGTTTCGCATTTAAATGGAGATTGGTTTTTATTTGGTGACAGT 120 Query: 121 CGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUW 180 ||+|||||||||||+||||||||||+||||||+|||||+||||||||+|||||||||||+ Sbjct: 121 CGTTCAGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTATTCTTATATGGACCTT 180 Query: 181 AAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGG 240 ||+||+|||+|||||++||+|||+|||||||||+|||||||||||||||||||+|||||| Sbjct: 181 AATCCTGCCTTGTGTGGTTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGG 240 Query: 241 AGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAU 300 ||||||||||||||+|||||||||||||||||||||||||||||+|||||+||+||+||| Sbjct: 241 AGTTTTCACTTTACTGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTAT 300 Query: 301 GAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAU 360 ||||||+|||+||||||||||+||||||||||||||||||+||+||||||+||||||||| Sbjct: 301 GAGGGTGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGAT 360 Query: 361 AUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAU 420 |||||||||||||||||||||||+||||||||||||+|||||||||||||||||||+||| Sbjct: 361 ATTTGGATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTAT 420 Query: 421 CGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCY 480 |||||+|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||+ Sbjct: 421 CGCAGCCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCC 480 Query: 481 HUUUGUAAAUYUGGUAGUUUAGUUCUUAAUAAYCCYGCMUAYAUWKCUCGUGAAGCUWRU 540 +|||||||||+|||||||||||||||||||||+||+||+||+||++|||||||||||++| Sbjct: 481 CTTTGTAAATCTGGTAGTTTAGTTCTTAATAACCCTGCATATATAGCTCGTGAAGCTAAT 540 Query: 541 KUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUGUGACGAGUAU 600 +|++|+||||||||||||||||+|||||||||+||||||+|||||||||||||||||||| Sbjct: 541 TTTGGGGATTATTATTATAAGGTTGAAGCTGATTTTTATTTGTCAGGTTGTGACGAGTAT 600 Query: 601 AUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACAAAGUAUUAUGAUGAY 660 ||||||||||||||||||||+||+||||||||+|||||+||||||||||||||||||||+ Sbjct: 601 ATCGTACCACTTTGTATTTTTAACGGCAAGTTTTTGTCTAATACAAAGTATTATGATGAT 660 Query: 661 AGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAAUUYYACUSAAACC 720 |||||||||||||||||||||||+||||||||||||||||||+||||||++|||+||||| Sbjct: 661 AGTCAATATTATTTTAATAAAGATACTGGTGTTATTTATGGTCTCAATTCTACTGAAACC 720 Query: 721 AUUACCACUGGUUUUGAYUUUAAUUGUCAUUAUUUASUUYUACCCUCUGGYAAUUAUUUA 780 |||||||||||||||||+||||||||||||||||||+||+||||||||||+||||||||| Sbjct: 721 ATTACCACTGGTTTTGACTTTAATTGTCATTATTTAGTTCTACCCTCTGGTAATTATTTA 780 Query: 781 GCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAUCUGUCUUARYAAGCGU 840 |||||||||||+||||||||||||||||||||+||+||||||||||||||||++|||||| Sbjct: 781 GCCATTTCAAATGAGCTATTGTTAACTGTTCCTACTAAAGCAATCTGTCTTAATAAGCGT 840 Query: 841 AAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAMUGCCDBKCHKUCUGAY 900 |||||||||||+|||||||||||+|||||+||+||||||||||+||||+++|++|||||+ Sbjct: 841 AAGGATTTTACGCCTGTACAGGTTGTTGATTCGCGGTGGAACAATGCCAGGCAGTCTGAT 900 Query: 901 AACAUGACGGCDGUUGCUUGYCAACCBCCGUACUGUUAUUUUCGUAAUUCUACUACYAAY 960 |||||||||||+||||||||+|||||+|||||||||||||||||||||||||||||+||+ Sbjct: 901 AACATGACGGCAGTTGCTTGTCAACCCCCGTACTGTTATTTTCGTAATTCTACTACCAAT 960 Query: 961 UAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUACUAGCAUACUYAGUGGU 1020 ||||||||||||||||||||||||||+|||||+||||||||||||||||||||+| |||| Sbjct: 961 TATGTTGGTGTTTATGATATCAATCATGGGGATGCTGGTTTTACTAGCATACTCAATGGT 1020 Query: 1021 UUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUAGGUAURAYAAURUUAGC 1080 |||||||||||+|||||+|||||+||+|| ||+|||||||||||||||+|+|||+||||| Sbjct: 1021 TTGTTATATGATTCACCTTGTTTTTCGCAACAAGGTGTTTTTAGGTATGATAATGTTAGC 1080 Query: 1081 AGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUGCURRUAUUAAYACMCCU 1140 |||+|+||||||||+||++|+|||||+||+||+||||||||||||++||||||+||+||| Sbjct: 1081 AGTGTCTGGCCTCTCTACCCTTATGGCAGATGCCCTACTGCTGCTGATATTAATACCCCT 1140 Query: 1141 GAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGCUUGGCAUYCUUUUGGKU 1200 |||++|||+||||||+|||||||+||+||||||+||||||||||||||||+|||||||+| Sbjct: 1141 GATGTACCCATTTGTGTGTATGACCCGCTACCAATTATTTTGCTTGGCATTCTTTTGGGT 1200 Query: 1201 GYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGGWGGAUAAUGGUACUAGG 1260 |+||||||||||||||||+||||||||||||| ||||||||||+|||||||||||||||| Sbjct: 1201 GTTGCGGTCATAATTATTGTAGTTTTGTTGTTGTATTTTATGGTGGATAATGGTACTAGG 1260 Query: 1261 CUGCA 1265 ||||| Sbjct: 1261 CTGCA 1265 Database: nr Query=17. HE - realigned consensus sequence Length=1232 Score E Sequences producing significant alignments: (Bits) Value MT820628 Betacoronavirus HKU24 isolate Lijiang-41, partial g... 514.345 5.51e-141 ALIGNMENTS >MT820628 Betacoronavirus HKU24 isolate Lijiang-41, partial genome Length = 30711 E-value = 5.51e-141, Score = 569, Bitscore = 514.345, Identities = 820/1232 (66%), Positives = 923/1232 (74%), Gaps = 16/1232 (1%) Frame = +1 Query: 52 GGUUUUGAHAACCCUCCUACCAAUKUUGUYUCKCAUUUAAAUGGAGAUUGGUUUUUAUUU 111 ||||||||+||||| || | ||||+||||+||+||| | |||| |||||||| || ||| Sbjct: 22001 GGTTTTGAAAACCCGCCCATCAATGTTGTTTCTCATGTTAATGATGATTGGTTCTTGTTT 22060 Query: 112 GGUGACAGUCGYUCAGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAU 171 ||||| |||||+ || |||||+||||| || || |||+||| ||||||||+||| Sbjct: 22061 GGTGATAGTCGTAGTGACTGTAACCATGTCAATAGTATCAATCCCAAAAATTATTCTTAT 22120 Query: 172 AUGGACCUWAAYCCHGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCC 231 ||||||||+ |+||+ | +|||||++||+ || || ||||| +|||| ||||| || ||| Sbjct: 22121 ATGGACCTTGACCCATCTTTGTGTGATTCAGGAAAGATATCTTCTAAGGCTGGTAATTCC 22180 Query: 232 AUYUUUAGGAGUUUUCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUY 291 ||+|||||||||||||| ||| |+||||| || ||||| || |||||| | || || Sbjct: 22181 ATCTTTAGGAGTTTTCATTTTTCTGATTTCTACAATTATCAGGGTGAAGGTAACCAGATA 22240 Query: 292 AUYUUYUAUGAGGGUSUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGY 351 || ||+||||| || +| |+|||| | ||| ||||| ||||||||||+| +||||||+ Sbjct: 22241 ATATTCTATGAAGGCGTCAATTTTTCACCTAGTCATGGGTTTAAATGCACCTCTTCTGGT 22300 Query: 352 AGUAAUGAUAUUUGGAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUG 411 ||||| || ||||| |||||||| +|| || | +||||||||| |||| Sbjct: 22301 GATAATGCCATCTGGATTGGTAATAAAGGTAAGTTCTATGAAAAAGTTTATAAGAGTATG 22360 Query: 412 GCUGUKUAUCGCAGYCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAA 471 ||||| ||||||||+|| |+ |||| |+||| || ||||| ||+ ||| | || Sbjct: 22361 GCTGTATATCGCAGTCTCTCTATTGTAACTGTTCCTTATGTGTATGCTGGAACGGCTTCT 22420 Query: 472 YCKAHAGCYHUUUGUAAAUYUGGUAGUUUAGUUCUU-AAUAAYCCYGCMUAYAUWKCUCG 530 | |+ | +| || || ||| ||||| | ||| || ||+|| ||+| +||+ Sbjct: 22421 GCCACCTCGATATGCAAGAGTGGCAGTTT-GACCTTAAACAATCCAGCATCTATACAAAA 22479 Query: 531 UGAAGCUWRUKUDRGKGAUUAUUAUUAUAAGGYUGAAGCUGAYUUUUAUYUGUCAGGUUG 590 ||| ++|+|++ + ||||| ||||| ||+ || ||| |+||| |+| || ||||| Sbjct: 22480 GGAAAGCAGTGTTAATAATTATATTTATATGGCAGAGGCTAATTTTACTCTTTCTGGTTG 22539 Query: 591 UGACGAGUAUAUCGUACCACUUUGUAUUUUYAAYGGCAAGUUYUUGUCKAAUACA---AA 647 ||| |||||||| ||||| || ||||||| +| +|| | |||+ | | || || | Sbjct: 22540 TGATGAGTATATAGTACCCCTGTGTATTTATAGTGGTATGTTCCTAGC--AT-CAGGTAC 22596 Query: 648 GUAUUAUGAUGAYAGUCAAUAUUAUUUUAAUAAAGAYACUGGUGUUAUUUAUGGUYUCAA 707 || || ||||+|| || ||||||| || | | +||||| | ||||||| + || Sbjct: 22597 TTACTACAATGATAGCCAGTATTATTATAGTTATAGTACTGGAGAATTTTATGGCCGTAA 22656 Query: 708 UUYYACUSAAACCAUUA--CCACUGGUUUUGAYUUUAAUUGUCAUUAU-UUASUUYUACC 764 + || +| || | |||||| ||||+| ||| || ||| |||+ | | || Sbjct: 22657 --CAACACAGTTGATAAAGCCACTGTGGTTGATTACGTTTGCCAATATCTTACCT-TGCC 22713 Query: 765 CUCUGGYAAUUAUUUAGCCAUUUCAAAYGAGCUAUUGUUAACUGUUCCYACKAAAGCAAU 824 ||||| |||| | | | || ||+ || | | | || ||||| ||+||||| || Sbjct: 22714 TTCTGGAGTTTATAAATCTGTGTCTAATCAGTTGCTTCTTACAGTTCCAACGAAAGCTAT 22773 Query: 825 CUGUCUUARYAAGCGUAAGGAUUUUACKCCUGUACAGGUYGUUGAYUCNCGGUGGAACAM 884 ||| | +||| || | ||||||+|| ||||| || |||||+||+|| |||||| + Sbjct: 22774 ATGTTTGGCCAAGTCAAAAGCTTTTACGCCAGTACAAGTAGTTGATTCTCGTTGGAACCA 22833 Query: 885 UGCCDBKCHKUCUGAYAACAUGACGGCDG-UUGCUUGYCAACCBCCGUACUGUUAUUUUC 943 ||||+ +|++|||||+|| | || ||+| || ||+||| +|| || || ||||||| Sbjct: 22834 TGCCA-GCAGTCTGATAATAAAACAGCAGAGGGCATGTCAATTGCCTTATTGCTATTTTC 22892 Query: 944 GUAAUUCUACUACYAAYUAUGUUGGUGUUUAUGAUAUCAAUCAYGGGGAYGCUGGUUUUA 1003 |||||||||| || |+||||||||| ||||||||| || ||+|| ||+| ||| ||| Sbjct: 22893 GTAATTCTACCACAGATTATGTTGGTAGTTATGATATTAACCATGGTGATGTTGGATTTT 22952 Query: 1004 CUAGCAUACUYAGUGGUUUGUUAUAUGAYUCACCYUGUUUYUCRCAGCARGGUGUUUUUA 1063 ||||||| ||+| |||||| ||| |+ | || |||||+ |+ | ||+||||| |||| Sbjct: 22953 CTAGCATCCTTAAGGGTTTGACTTATAATGCGCCATGTTTTGCAAAACAGGGTGTGTTTA 23012 Query: 1064 GGUAURAYAAURUUAGCAGURUYUGGCCUCUYUAYYCYUAUGGMAGRUGYCCUACUGCUG 1123 ||||+|+|||+| ||||||+|+||||| +||++|+|||||+ +||+|| ||||||| Sbjct: 23013 TGTATAATAATATCAGCAGTGTTTGGCCAGCCTATTCTTATGGCGAGTGCCCCACTGCTG 23072 Query: 1124 CURRUAUUAAYACMCCUGAURYACCYAUUUGUKUGUAUGAYCCKCUACCAMUUAUUUUGC 1183 ||++||| ||+ + || ++ ||+|||||| |||||+||+||||| ||||||||| Sbjct: 23073 CTAATATAAATGTAAATGGAATTCCCATTTGTAATTATGATCCGCTACCCGTTATTTTGC 23132 Query: 1184 UUGGCAUYCUUUUGGKUGYUGCGGUCAUAAUUAUUSUAGUUUUGUUGUUAUAUUUUAUGG 1243 ||||||| | | |+| + ||||| |||| || +| ||| | ||||| ||||| | | Sbjct: 23133 TTGGCATATTGCTTGGTATAGCGGTTATAACCATAGTGGTTCTTTTGTTGTATTTCCTTG 23192 Query: 1244 WGGAUAAUGGUACUAGGCUGCAUGAUGCUUAG 1275 +|||||||||| ||||||| |||||||||||| Sbjct: 23193 TGGATAATGGTTCTAGGCTACATGATGCTTAG 23224 Database: nr Query=17. HE - realigned consensus sequence Length=368 Score E Sequences producing significant alignments: (Bits) Value JQ918853 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-725 he... 554.019 6.28e-153 ALIGNMENTS >JQ918853 Betacoronavirus 1 strain BCoV/WD/2007/WDBR-R-725 hemagglutinin-esterase (HE) gene, partial cds Length = 368 E-value = 6.28e-153, Score = 613, Bitscore = 554.019, Identities = 328/368 (89%), Positives = 367/368 (99%), Gaps = 0/368 (0%) Frame = +1 Query: 126 AGAUUGUAAYCAUGUUGUUAMUACCAAYCCCCGYAAUUAUUCYUAUAUGGACCUWAAYCC 185 |||||||||+||||||||||+||||||+|||||+||||| ||+|||||||||||+||+|| Sbjct: 1 AGATTGTAATCATGTTGTTACTACCAACCCCCGTAATTACTCTTATATGGACCTTAATCC 60 Query: 186 HGCCYUGUGURRUUYUGGYAAAAUAUCAKCUAAAGCUGGCAACUCCAUYUUUAGGAGUUU 245 +|||+|||||++||+|||+|||||||||+|||||||||||||||||||+||||||||||| Sbjct: 61 TGCCTTGTGTGATTCTGGTAAAATATCATCTAAAGCTGGCAACTCCATTTTTAGGAGTTT 120 Query: 246 UCACUUUACBGAUUUUUAUAAUUACACAGGCGAAGGUCARCAAAUYAUYUUYUAUGAGGG 305 |||||||||+|||||||||||||||||||||||||||||+|||||+||+||+|||||||| Sbjct: 121 TCACTTTACCGATTTTTATAATTACACAGGCGAAGGTCAACAAATTATTTTCTATGAGGG 180 Query: 306 USUUARUUUUACGCCUYAUCAUGCCUUUAAAUGCABCANUUCUGGYAGUAAUGAUAUUUG 365 |+|||+||||||||||+||||||||||||||||||+||+||||||+|||||||||||||| Sbjct: 181 TGTTAATTTTACGCCTTATCATGCCTTTAAATGCACCACTTCTGGTAGTAATGATATTTG 240 Query: 366 GAUGCAGAAUAAAGGCUUDUUUUACACUCAGRUUUAUAAGAAUAUGGCUGUKUAUCGCAG 425 ||||||||||||||||||+||||||||||||+|||||||||||||||||||+|||||||| Sbjct: 241 GATGCAGAATAAAGGCTTGTTTTACACTCAGGTTTATAAGAATATGGCTGTGTATCGCAG 300 Query: 426 YCUUACWUUUGUUAVUGUACCAUAUGUUUAYAAUGGCUCUGCACAAYCKAHAGCYHUUUG 485 +|||||+|||||||+|||||||||||||||+|||||||||||||||+|+|+|||++|||| Sbjct: 301 CCTTACTTTTGTTAATGTACCATATGTTTATAATGGCTCTGCACAATCTACAGCCCTTTG 360 Query: 486 UAAAUYUG 493 |||||+|| Sbjct: 361 TAAATCTG 368